Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3561 Fragaria x ananassa HOM05D003167 ORTHO05D030899 3.4e-164 581.6 299 100.0
FAN02G2003 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.1e-90 337.4 246 78.0
FAN14G2907 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.6e-89 332.4 250 77.2
FvH4_6g17312 Fragaria vesca HOM05D003167 ORTHO05D003929 1.0e-88 330.9 250 76.8
RcHm_v2.0_Chr3g0471451 Rosa chinensis HOM05D003167 ORTHO05D003929 1.1e-87 327.4 251 76.1
FAN05G3981 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.7e-86 323.6 286 69.2
FAN05G3544 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.8e-86 322.8 286 69.2
FAN05G5009 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.8e-86 322.8 286 69.2
Prupe.7G122300 Prunus persica HOM05D003167 ORTHO05D003929 4.8e-70 268.9 250 67.6
GSVIVG01033725001 Vitis vinifera HOM05D003167 ORTHO05D003929 1.3e-67 260.8 249 64.3
Duzib093G1992 Durio zibethinus HOM05D003167 ORTHO05D003929 3.2e-66 256.1 249 63.5
Thecc.05G076300 Theobroma cacao HOM05D003167 ORTHO05D003929 1.6e-65 253.8 249 63.1
Cfa016494 Carpinus fangiana HOM05D003167 ORTHO05D003929 2.7e-65 253.1 249 62.2
Sabra06G0093300 Salix brachista HOM05D003167 ORTHO05D003929 6.1e-65 251.9 248 62.9
Haze_19497 Corylus avellana HOM05D003167 ORTHO05D003929 8.8e-64 248.1 249 61.0
Gohir.D04G106400 Gossypium hirsutum HOM05D003167 ORTHO05D003929 2.6e-63 246.5 250 61.6
Cpa.g.sc5.120 Carica papaya HOM05D003167 ORTHO05D003929 3.3e-63 246.1 261 58.6
Gohir.A04G067800 Gossypium hirsutum HOM05D003167 ORTHO05D003929 4.4e-63 245.7 249 61.8
Hma1.2p1_0564F.1_g179130 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 5.7e-63 245.4 249 62.2
DCAR_020795 Daucus carota HOM05D003167 ORTHO05D003929 1.3e-62 244.2 255 59.6
MD14G1096200 Malus domestica HOM05D003167 ORTHO05D003929 2.2e-62 243.4 261 59.4
TPR.G31678 Trifolium pratense HOM05D003167 ORTHO05D003929 4.1e-61 239.2 250 60.0
Ca_08942_v3 Cicer arietinum L. HOM05D003167 ORTHO05D003929 1.2e-60 237.7 250 60.4
arahy.Tifrunner.gnm1.ann1.P92TZX Arachis hypogaea HOM05D003167 ORTHO05D003929 1.6e-60 237.3 262 58.0
arahy.Tifrunner.gnm1.ann1.WY8M22 Arachis hypogaea HOM05D003167 ORTHO05D003929 1.6e-60 237.3 262 58.0
MELO3C009413.2 Cucumis melo HOM05D003167 ORTHO05D003929 2.0e-60 236.9 254 59.4
Rhsim03G0085500 Rhododendron simsii HOM05D003167 ORTHO05D003929 3.5e-60 236.1 249 58.6
Glyma.19G188800 Glycine max HOM05D003167 ORTHO05D003929 5.9e-60 235.3 283 54.1
Psat3g037760 Pisum sativum HOM05D003167 ORTHO05D003929 5.9e-60 235.3 250 58.8
vmacro07353 Vaccinium macrocarpon HOM05D003167 ORTHO05D003929 7.7e-60 235.0 250 58.8
Actinidia26630 Actinidia chinensis HOM05D003167 ORTHO05D003929 1.0e-59 234.6 250 60.0
Lj1g0005916 Lotus japonicus HOM05D003167 ORTHO05D003929 1.3e-59 234.2 263 57.0
Medtr7g102700 Medicago truncatula HOM05D003167 ORTHO05D003929 1.3e-59 234.2 255 58.4
Phvul.001G184000 Phaseolus vulgaris HOM05D003167 ORTHO05D003929 1.3e-59 234.2 253 57.7
Glyma.03G188600 Glycine max HOM05D003167 ORTHO05D003929 1.7e-59 233.8 283 54.1
Glyma.13G148300 Glycine max HOM05D003167 ORTHO05D003929 2.2e-59 233.4 250 58.8
Aqoxy1G01021 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 3.8e-59 232.6 249 57.8
Aa31LG1G9100 Aethionema arabicum HOM05D003167 ORTHO05D003929 1.5e-58 230.7 310 52.3
CiPaw.10G002600 Carya illinoinensis HOM05D003167 ORTHO05D003929 1.9e-58 230.3 248 58.9
TAR623G0013 Trochodendron aralioides HOM05D003167 ORTHO05D003929 1.9e-58 230.3 249 57.4
CANSAT80G1311 Cannabis sativa HOM05D003167 ORTHO05D003929 4.2e-58 229.2 253 56.9
COL.COLO4_22264 Corchorus olitorius HOM05D003167 ORTHO05D003929 5.5e-58 228.8 253 57.7
Gorai.009G410400 Gossypium raimondii HOM05D003167 ORTHO05D003929 5.5e-58 228.8 250 58.0
Lj3C1008T14 Lonicera japonica HOM05D003167 ORTHO05D003929 3.6e-57 226.1 249 58.2
VMungo1383G0302 Vigna mungo HOM05D003167 ORTHO05D003929 4.7e-57 225.7 251 57.4
Thhalv10006994m.g Eutrema salsugineum HOM05D003167 ORTHO05D003929 1.0e-56 224.6 256 56.2
Aqoxy1G01022 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 1.8e-56 223.8 262 53.8
CARHR003250 Cardamine hirsuta HOM05D003167 ORTHO05D003929 3.0e-56 223.0 258 55.4
Carub.0001s0306 Capsella rubella HOM05D003167 ORTHO05D003929 5.2e-56 222.2 313 48.6
Manes.08G017200 Manihot esculenta HOM05D003167 ORTHO05D003929 5.2e-56 222.2 248 58.5
AL1G13510 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 1.2e-55 221.1 313 48.6
Ciclev10011207m.g Citrus clementina HOM05D003167 ORTHO05D003929 1.2e-55 221.1 247 56.7
Eucgr.K02416 Eucalyptus grandis HOM05D003167 ORTHO05D003929 2.0e-55 220.3 247 57.1
Potri.006G118700 Populus trichocarpa HOM05D003167 ORTHO05D003929 2.0e-55 220.3 282 53.2
AT1G03910 Arabidopsis thaliana HOM05D003167 ORTHO05D003929 2.6e-55 219.9 313 48.9
Sp1g02770 Schrenkiella parvula HOM05D003167 ORTHO05D003929 2.6e-55 219.9 256 55.9
Psat6g078080 Pisum sativum HOM05D003167 ORTHO05D003929 3.4e-55 219.5 253 56.9
THA.LOC104816364 Tarenaya hassleriana HOM05D003167 ORTHO05D003929 4.4e-55 219.2 257 56.0
TAR636G1269 Trochodendron aralioides HOM05D003167 ORTHO05D003929 4.4e-55 219.2 249 55.0
CSS0014862 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 7.5e-55 218.4 249 55.4
Sc01g0003900 Simmondsia chinensis HOM05D003167 ORTHO05D003929 9.8e-55 218.0 267 51.7
TPR.G27088 Trifolium pratense HOM05D003167 ORTHO05D003929 1.3e-54 217.6 250 56.0
CSS0043785 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 1.7e-54 217.2 249 55.4
BcaC05g24486 Brassica carinata HOM05D003167 ORTHO05D003929 2.2e-54 216.9 310 49.0
Atru.chr8.1695 Acer truncatum HOM05D003167 ORTHO05D003929 3.7e-54 216.1 266 53.8
Lalb_Chr25g0288761 Lupinus albus HOM05D003167 ORTHO05D003929 3.7e-54 216.1 256 54.3
BraA09t42148Z Brassica rapa HOM05D003167 ORTHO05D003929 1.4e-53 214.2 259 53.7
Dinv35839 Davidia involucrata HOM05D003167 ORTHO05D003929 3.1e-53 213.0 249 54.6
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 5.4e-53 212.2 255 54.5
BolC5t29003H Brassica oleracea HOM05D003167 ORTHO05D003929 5.4e-53 212.2 255 54.5
ClCG10G019590 Citrullus lanatus HOM05D003167 ORTHO05D003929 1.2e-52 211.1 253 54.5
CsaV3_3G036590 Cucumis sativus L. HOM05D003167 ORTHO05D003929 1.2e-52 211.1 263 52.9
BolC8t52784H Brassica oleracea HOM05D003167 ORTHO05D003929 1.6e-52 210.7 259 54.1
Cc10_g12700 Coffea canephora HOM05D003167 ORTHO05D003929 2.0e-52 210.3 250 54.8
Medtr1g061860 Medicago truncatula HOM05D003167 ORTHO05D003929 2.7e-52 209.9 253 54.5
C08p52570 Brassica napus HOM05D003167 ORTHO05D003929 7.7e-52 208.4 259 54.1
A09p68130 Brassica napus HOM05D003167 ORTHO05D003929 1.3e-51 207.6 259 53.7
Lalb_Chr21g0315291 Lupinus albus HOM05D003167 ORTHO05D003929 2.3e-51 206.8 284 52.1
Migut.G00710 Erythranthe guttata HOM05D003167 ORTHO05D003929 2.9e-51 206.5 268 51.5
ECA238G2918 Erigeron canadensis HOM05D003167 ORTHO05D003929 5.0e-51 205.7 248 51.6
QL07p041296 Quercus lobata HOM05D003167 ORTHO05D003929 6.6e-51 205.3 248 53.2
PSO339G0841 Papaver somniferum HOM05D003167 ORTHO05D003929 1.5e-50 204.1 252 52.8
PGR142G4079 Punica granatum HOM05D003167 ORTHO05D003929 1.9e-50 203.8 248 52.4
Sed0027110 Sechium edule HOM05D003167 ORTHO05D003929 1.9e-50 203.8 257 52.5
Hund04098 Selenicereus undatus HOM05D003167 ORTHO05D003929 2.5e-50 203.4 261 50.6
EL10Ac7g16722 Beta vulgaris HOM05D003167 ORTHO05D003929 1.2e-49 201.1 256 52.0
Zm00001eb061170 Zea mays HOM05D003167 ORTHO05D003929 1.6e-49 200.7 260 50.8
Thecc.06G013600 Theobroma cacao HOM05D003167 ORTHO05D003929 8.0e-49 198.4 268 53.0
MD12G1102100 Malus domestica HOM05D003167 ORTHO05D003929 1.0e-48 198.0 260 52.7
RcHm_v2.0_Chr3g0471601 Rosa chinensis HOM05D003167 ORTHO05D030899 1.0e-48 198.0 165 70.3
BcaC07g42222 Brassica carinata HOM05D003167 ORTHO05D003929 1.8e-48 197.2 260 50.8
VMungo0720G2588 Vigna mungo HOM05D003167 ORTHO05D003929 2.3e-48 196.8 255 53.3
Sopen10g034860 Solanum pennellii HOM05D003167 ORTHO05D003929 3.0e-48 196.4 260 49.2
Solyc10g085410.3 Solanum lycopersicum HOM05D003167 ORTHO05D003929 4.0e-48 196.1 260 49.6
Lj8P306T56 Lonicera japonica HOM05D003167 ORTHO05D003929 9.8e-47 191.4 248 54.0
Peaxi162Scf00732g00028 Petunia axillaris HOM05D003167 ORTHO05D003929 9.8e-47 191.4 251 51.4
HanXRQChr11g0325191 Helianthus annuus HOM05D003167 ORTHO05D003929 1.3e-46 191.0 247 51.4
HPP92_017793 Vanilla planifolia HOM05D003167 ORTHO05D003929 1.3e-46 191.0 253 49.8
PGSC0003DMG400040194 Solanum tuberosum HOM05D003167 ORTHO05D003929 1.7e-46 190.7 261 48.7
CAN.G738.3 Capsicum annuum HOM05D003167 ORTHO05D003929 2.8e-46 189.9 260 49.2
COL.COLO4_17620 Corchorus olitorius HOM05D003167 ORTHO05D003929 8.3e-46 188.3 226 54.9
SalBow8G1467 Salvia bowleyana HOM05D003167 ORTHO05D003929 1.1e-45 188.0 253 50.6
SalBow8G3947 Salvia bowleyana HOM05D003167 ORTHO05D003929 1.1e-45 188.0 253 50.6
Peaxi162Scf01089g10011 Petunia axillaris HOM05D003167 ORTHO05D003929 3.1e-45 186.4 275 47.6
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 4.1e-45 186.0 255 49.8
Ah.15g091340 Amaranthus hybridus HOM05D003167 ORTHO05D003929 2.7e-44 183.3 248 48.4
AUR62040188 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.7e-44 183.3 247 48.6
Cc00_g14960 Coffea canephora HOM05D003167 ORTHO05D003929 3.5e-44 183.0 224 52.2
Nitab4.5_0002027g0020 Nicotiana tabacum HOM05D003167 ORTHO05D003929 4.5e-44 182.6 257 47.9
Lsat_1_v5_gn_2_23140 Lactuca sativa HOM05D003167 ORTHO05D003929 7.8e-44 181.8 256 48.0
Mapoly0001s0156 Marchantia polymorpha HOM05D003167 ORTHO05D003929 4.3e-42 176.0 260 46.2
MSTRG.21603 Avicennia marina HOM05D003167 ORTHO05D003929 5.6e-42 175.6 250 46.8
ATR0724G050 Amborella trichopoda HOM05D003167 ORTHO05D003929 9.5e-42 174.9 251 47.0
AUR62042696 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.8e-41 173.3 247 47.0
Carub.0004s1866 Capsella rubella HOM05D003167 ORTHO05D003929 3.6e-41 172.9 247 45.7
SGA_v2.0_scaffold312G48279 Striga asiatica HOM05D003167 ORTHO05D003929 3.6e-41 172.9 251 48.6
SEGI_34935 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 6.8e-40 168.7 251 47.8
SHI27742 Sapria himalayana HOM05D003167 ORTHO05D003929 2.0e-39 167.2 252 46.4
CDE04G1328 Ceratophyllum demersum HOM05D003167 ORTHO05D003929 1.0e-35 154.8 242 43.4
Eucgr.D02277 Eucalyptus grandis HOM05D003167 ORTHO05D003929 1.7e-35 154.1 271 41.7
AagrBONN_evm.TU.Sc2ySwM_344.2239 Anthoceros agrestis HOM05D003167 ORTHO05D003929 2.3e-35 153.7 250 40.0
SMO169G0108 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 3.6e-33 146.4 240 42.5
PSO210G0575 Papaver somniferum HOM05D003167 ORTHO05D003929 4.7e-33 146.0 294 39.1
Thecc.08G192100 Theobroma cacao HOM05D003167 ORTHO05D003929 1.1e-32 144.8 136 59.6
RcHm_v2.0_Chr2g0092191 Rosa chinensis HOM05D003167 ORTHO05D003929 4.0e-32 142.9 244 44.7
FAN19G3088 Fragaria x ananassa HOM05D003167 ORTHO05D003929 6.8e-32 142.1 247 45.3
FvH4_1g06450 Fragaria vesca HOM05D003167 ORTHO05D003929 3.4e-31 139.8 247 45.3
CBR_g4119 Chara braunii HOM05D003167 ORTHO05D003929 1.3e-30 137.9 266 40.2
FAN26G0867 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.9e-29 134.0 243 44.4
FAN26G2184 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.9e-29 134.0 243 44.4
FAN23G0551 Fragaria x ananassa HOM05D003167 ORTHO05D003929 5.4e-29 132.5 243 44.0
FAN28G1035 Fragaria x ananassa HOM05D003167 ORTHO05D003929 5.4e-29 132.5 243 44.0
Pp3c27_420 Physcomitrium patens HOM05D003167 ORTHO05D003929 1.6e-28 131.0 252 36.9
unitig_578.g16659 Utricularia gibba HOM05D003167 ORTHO05D003929 7.8e-28 128.6 250 43.6
AUR62018820 Chenopodium quinoa HOM05D003167 ORTHO05D003929 8.6e-27 125.2 248 40.3
Os03g0800100 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 3.6e-25 119.8 87 66.7
AL4G33010 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 2.3e-24 117.1 246 37.0
AUR62007182 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.1e-24 116.7 248 38.3
AUR62007183 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.1e-24 116.7 248 38.3
CARHR131270 Cardamine hirsuta HOM05D003167 ORTHO05D003929 4.0e-24 116.3 184 44.6
Hma1.2p1_0033F.1_g020940 Hydrangea macrophylla HOM05D003167 ORTHO05D023710 2.0e-23 114.0 241 36.5
Zm00001eb017020 Zea mays HOM05D003167 ORTHO05D023710 4.4e-23 112.8 97 58.8
Oeu027192.1 Olea europaea HOM05D003167 ORTHO05D003929 7.5e-23 112.1 183 48.1
PGR083G2067 Punica granatum HOM05D003167 ORTHO05D003929 2.2e-22 110.5 194 40.7
Lj2g0005784 Lotus japonicus HOM05D003167 ORTHO05D003929 4.9e-22 109.4 300 36.0
Nitab4.5_0000883g0030 Nicotiana tabacum HOM05D003167 ORTHO05D023710 2.1e-20 104.0 199 43.7
Cc04_g07780 Coffea canephora HOM05D003167 ORTHO05D003929 9.9e-15 85.1 268 30.6
ECA232G4074 Erigeron canadensis HOM05D003167 ORTHO05D003929 3.2e-13 80.1 84 59.5
EL10Ac3g06890 Beta vulgaris HOM05D003167 ORTHO05D003929 9.2e-13 78.6 243 30.0
Atru.chr10.2405 Acer truncatum HOM05D003167 ORTHO05D003929 1.2e-12 78.2 187 37.4
Aqoxy3G01485 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 1.9e-10 70.9 157 35.7
AUR62009153 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.6e-09 66.6 146 34.9
CAN.G1459.3 Capsicum annuum HOM05D003167 ORTHO05D003929 6.2e-09 65.9 76 53.9
AUR62022073 Chenopodium quinoa HOM05D003167 ORTHO05D003929 6.2e-09 65.9 137 36.5
AUR62022074 Chenopodium quinoa HOM05D003167 ORTHO05D003929 6.2e-09 65.9 137 36.5
AT2G36815 Arabidopsis thaliana HOM05D003167 ORTHO05D023710 3.1e-08 63.5 106 35.8
SEGI_27063 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 4.9e-06 56.2 158 38.6
Hma1.2p1_2996F.1_g331470 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 8.4e-06 55.5 124 33.9
Zm00001eb345920 Zea mays HOM05D003167 ORTHO05D023710 8.4e-06 55.5 97 38.1


User provided reference genes

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