Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3526 Fragaria x ananassa HOM05D007186 ORTHO05D008970 1.9e-92 342.4 166 100.0
FAN05G2361 Fragaria x ananassa HOM05D007186 ORTHO05D008970 4.4e-89 331.3 168 97.0
FvH4_6g41490 Fragaria vesca HOM05D007186 ORTHO05D008970 4.9e-88 327.8 168 94.6
RcHm_v2.0_Chr2g0157151 Rosa chinensis HOM05D007186 ORTHO05D008970 1.5e-84 316.2 168 93.5
Prupe.3G204800 Prunus persica HOM05D007186 ORTHO05D008970 9.8e-73 276.9 161 83.2
MD09G1119400 Malus domestica HOM05D007186 ORTHO05D008970 1.6e-67 259.6 159 81.1
QL08p029418 Quercus lobata HOM05D007186 ORTHO05D008970 3.2e-63 245.4 161 72.0
Ciclev10016992m.g Citrus clementina HOM05D007186 ORTHO05D008970 3.5e-62 241.9 162 71.6
CANSAT54G2500 Cannabis sativa HOM05D007186 ORTHO05D008970 6.0e-62 241.1 150 75.3
COL.COLO4_06941 Corchorus olitorius HOM05D007186 ORTHO05D008970 1.7e-61 239.6 163 71.8
Dinv07835 Davidia involucrata HOM05D007186 ORTHO05D008970 1.9e-60 236.1 155 73.5
Potri.014G162700 Populus trichocarpa HOM05D007186 ORTHO05D008970 3.3e-60 235.3 163 71.2
Atru.chr6.3329 Acer truncatum HOM05D007186 ORTHO05D008970 7.3e-60 234.2 166 69.3
Sabra14G0124100 Salix brachista HOM05D007186 ORTHO05D008970 1.2e-59 233.4 161 72.0
Rhsim06G0171800 Rhododendron simsii HOM05D007186 ORTHO05D008970 8.1e-59 230.7 152 71.7
CSS0038956 Camellia sinensis var. sinensis HOM05D007186 ORTHO05D008970 1.1e-58 230.3 165 70.9
CiPaw.04G194300 Carya illinoinensis HOM05D007186 ORTHO05D008970 1.4e-58 229.9 159 70.4
Gohir.D07G195800 Gossypium hirsutum HOM05D007186 ORTHO05D008970 1.8e-58 229.6 161 70.2
TWI36G0211 Tripterygium wilfordii HOM05D007186 ORTHO05D008970 4.0e-58 228.4 166 66.3
Gorai.001G219300 Gossypium raimondii HOM05D007186 ORTHO05D008970 5.2e-58 228.0 161 69.6
Eucgr.K00670 Eucalyptus grandis HOM05D007186 ORTHO05D008970 3.4e-57 225.3 166 65.7
Peaxi162Scf00147g01818 Petunia axillaris HOM05D007186 ORTHO05D008970 5.8e-57 224.6 153 69.9
Nitab4.5_0011275g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 7.6e-57 224.2 160 68.8
GSVIVG01030422001 Vitis vinifera HOM05D007186 ORTHO05D008970 9.9e-57 223.8 161 67.1
Nitab4.5_0002877g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 2.4e-55 219.2 160 66.2
PGSC0003DMG400030273 Solanum tuberosum HOM05D007186 ORTHO05D008970 2.7e-54 215.7 149 71.1
Actinidia07891 Actinidia chinensis HOM05D007186 ORTHO05D008970 3.5e-54 215.3 140 75.0
VMungo0647G1315 Vigna mungo HOM05D007186 ORTHO05D008970 3.5e-54 215.3 160 68.1
AUR62015089 Chenopodium quinoa HOM05D007186 ORTHO05D008970 4.6e-54 214.9 152 67.8
AUR62044229 Chenopodium quinoa HOM05D007186 ORTHO05D008970 4.6e-54 214.9 152 67.8
AUR62044345 Chenopodium quinoa HOM05D007186 ORTHO05D008970 4.6e-54 214.9 152 67.8
MELO3C019365.2 Cucumis melo HOM05D007186 ORTHO05D008970 6.0e-54 214.5 154 68.8
Glyma.02G307400 Glycine max HOM05D007186 ORTHO05D008970 6.0e-54 214.5 161 68.3
Medtr5g097970 Medicago truncatula HOM05D007186 ORTHO05D008970 7.8e-54 214.2 154 68.8
Phvul.008G287400 Phaseolus vulgaris HOM05D007186 ORTHO05D008970 7.8e-54 214.2 159 66.7
AUR62017547 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.3e-53 213.4 152 68.4
Sopen05g025420 Solanum pennellii HOM05D007186 ORTHO05D008970 3.9e-53 211.8 147 69.4
TPR.G15068 Trifolium pratense HOM05D007186 ORTHO05D008970 6.6e-53 211.1 159 64.8
CsaV3_6G009340 Cucumis sativus L. HOM05D007186 ORTHO05D008970 1.1e-52 210.3 154 66.9
Solyc05g041430.3 Solanum lycopersicum HOM05D007186 ORTHO05D008970 1.1e-52 210.3 147 68.7
TAR624G0839 Trochodendron aralioides HOM05D007186 ORTHO05D008970 1.5e-52 209.9 168 63.1
Haze_12721 Corylus avellana HOM05D007186 ORTHO05D008970 2.5e-52 209.1 230 50.4
Duzib138G0377 Durio zibethinus HOM05D007186 ORTHO05D008970 2.5e-52 209.1 144 70.1
THA.LOC104808856 Tarenaya hassleriana HOM05D007186 ORTHO05D008970 7.3e-52 207.6 165 63.0
PGR142G1014 Punica granatum HOM05D007186 ORTHO05D008970 2.1e-51 206.1 155 65.2
Psat2g003840 Pisum sativum HOM05D007186 ORTHO05D008970 3.6e-51 205.3 160 64.4
PSO675G5362 Papaver somniferum HOM05D007186 ORTHO05D008970 4.8e-51 204.9 154 62.3
Manes.13G063846 Manihot esculenta HOM05D007186 ORTHO05D008970 1.4e-50 203.4 145 68.3
Hund24136 Selenicereus undatus HOM05D007186 ORTHO05D008970 2.4e-50 202.6 163 60.7
Hma1.2p1_0133F.1_g061060 Hydrangea macrophylla HOM05D007186 ORTHO05D008970 3.1e-50 202.2 133 71.4
arahy.Tifrunner.gnm1.ann1.HI5B62 Arachis hypogaea HOM05D007186 ORTHO05D008970 2.0e-49 199.5 164 61.6
unitig_578.g16640 Utricularia gibba HOM05D007186 ORTHO05D008970 7.6e-49 197.6 165 60.0
FAN02G3692 Fragaria x ananassa HOM05D007186 ORTHO05D008970 4.9e-48 194.9 166 66.3
LjContig00081g0025535 Lotus japonicus HOM05D000229 ORTHO05D008970 8.4e-48 194.1 148 65.5
arahy.Tifrunner.gnm1.ann1.CRYT1U Arachis hypogaea HOM05D007186 ORTHO05D008970 7.1e-47 191.0 175 60.0
Aqoxy1G02832 Aquilegia oxysepala HOM05D007186 ORTHO05D008970 9.3e-47 190.7 148 62.8
Lsat_1_v5_gn_9_105540 Lactuca sativa HOM05D007186 ORTHO05D008970 2.1e-46 189.5 160 58.8
HPP92_022801 Vanilla planifolia HOM05D007186 ORTHO05D008970 4.6e-46 188.3 154 61.0
Carub.0003s2639 Capsella rubella HOM05D007186 ORTHO05D008970 6.0e-46 188.0 154 60.4
FAN14G0401 Fragaria x ananassa HOM05D007186 ORTHO05D008970 6.0e-46 188.0 98 90.8
Lalb_Chr04g0247191 Lupinus albus HOM05D007186 ORTHO05D008970 7.8e-46 187.6 145 63.4
AL3G42380 Arabidopsis lyrata HOM05D007186 ORTHO05D008970 1.0e-45 187.2 161 59.6
HanXRQChr03g0075731 Helianthus annuus HOM05D007186 ORTHO05D008970 1.0e-45 187.2 166 58.4
ClCG02G009490 Citrullus lanatus HOM05D007186 ORTHO05D008970 1.3e-45 186.8 198 52.0
ECA240G1183 Erigeron canadensis HOM05D007186 ORTHO05D008970 1.3e-45 186.8 146 64.4
Sp3g23400 Schrenkiella parvula HOM05D007186 ORTHO05D008970 1.1e-44 183.7 146 60.3
C03p55060 Brassica napus HOM05D007186 ORTHO05D008970 2.5e-44 182.6 146 58.9
BolC3t17781H Brassica oleracea HOM05D007186 ORTHO05D008970 2.5e-44 182.6 146 58.9
Thhalv10002690m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 2.5e-44 182.6 149 58.4
BcaC01g03189 Brassica carinata HOM05D007186 ORTHO05D008970 3.3e-44 182.2 146 59.6
CARHR102760 Cardamine hirsuta HOM05D007186 ORTHO05D008970 3.3e-44 182.2 160 56.9
MBI19_g06151_MAGBIO Magnolia biondii HOM05D007186 ORTHO05D008970 8.1e-43 177.6 132 63.6
Sed0024069 Sechium edule HOM05D007186 ORTHO05D008970 9.0e-42 174.1 147 59.2
Glyma.14G005600 Glycine max HOM05D007186 ORTHO05D008970 1.5e-41 173.3 143 62.9
ATR0712G003 Amborella trichopoda HOM05D007186 ORTHO05D008970 5.8e-41 171.4 141 56.7
BraA03t13576Z Brassica rapa HOM05D007186 ORTHO05D008970 1.7e-40 169.9 133 60.2
Migut.M00010 Erythranthe guttata HOM05D007186 ORTHO05D008970 1.7e-40 169.9 153 56.9
Lj8A132T57 Lonicera japonica HOM05D007186 ORTHO05D008970 1.7e-40 169.9 149 59.1
A03p44430 Brassica napus HOM05D007186 ORTHO05D008970 2.2e-40 169.5 133 60.2
BcaC01g03185 Brassica carinata HOM05D007186 ORTHO05D008970 3.8e-40 168.7 143 55.9
AUR62044292 Chenopodium quinoa HOM05D007186 ORTHO05D008970 4.9e-40 168.3 152 57.2
BolC3t17784H Brassica oleracea HOM05D007186 ORTHO05D008970 1.4e-39 166.8 143 55.9
C03p55120 Brassica napus HOM05D007186 ORTHO05D008970 5.4e-39 164.9 133 57.1
BcaB08g34487 Brassica carinata HOM05D007186 ORTHO05D008970 7.9e-38 161.0 135 56.3
Oeu040479.1 Olea europaea HOM05D007186 ORTHO05D008970 3.0e-37 159.1 117 65.8
BcaC01g03187 Brassica carinata HOM05D007186 ORTHO05D008970 3.3e-36 155.6 125 58.4
SEGI_21441 Sequoiadendron giganteum HOM05D007186 ORTHO05D008970 3.3e-36 155.6 148 49.3
SalBow7G1582 Salvia bowleyana HOM05D000037 ORTHO05D000150 6.2e-35 151.4 131 60.3
Zm00001eb245650 Zea mays HOM05D007186 ORTHO05D008970 6.2e-35 151.4 126 59.5
Os02g0588600 Oryza sativa ssp. japonica HOM05D007186 ORTHO05D008970 2.4e-34 149.4 135 55.6
DCAR_032166 Daucus carota HOM05D000693 ORTHO05D008970 1.0e-32 144.1 95 69.5
Aa31sc53G20 Aethionema arabicum HOM05D007186 ORTHO05D006113 3.8e-32 142.1 169 46.2
vmacro12130 Vaccinium macrocarpon HOM05D007186 ORTHO05D008970 1.2e-30 137.1 150 52.7
Gohir.A07G189700 Gossypium hirsutum HOM05D007186 ORTHO05D008970 7.9e-30 134.4 92 73.9
Thecc.01G185600 Theobroma cacao HOM05D007186 ORTHO05D008970 5.1e-29 131.7 91 71.4
arahy.Tifrunner.gnm1.ann1.I316DY Arachis hypogaea HOM05D007186 ORTHO05D008970 1.5e-25 120.2 92 63.0
EL10Ac9g22768 Beta vulgaris HOM05D007186 ORTHO05D008970 1.5e-25 120.2 97 66.0
Sc20g0003870 Simmondsia chinensis HOM05D007186 ORTHO05D008970 1.0e-24 117.5 102 50.0
Pp3c15_5880 Physcomitrium patens HOM05D007186 ORTHO05D008970 1.3e-24 117.1 153 44.4
MSTRG.6661 Avicennia marina HOM05D007186 ORTHO05D008970 2.5e-23 112.8 81 70.4
arahy.Tifrunner.gnm1.ann1.ZIY68Y Arachis hypogaea HOM05D007186 ORTHO05D008970 3.5e-22 109.0 86 61.6
SMO364G0535 Selaginella moellendorffii HOM05D007186 ORTHO05D008970 5.1e-21 105.1 142 38.7
Nn1g07413 Nelumbo nucifera HOM05D007186 ORTHO05D008970 1.5e-20 103.6 72 62.5
AUR62025215 Chenopodium quinoa HOM05D007186 ORTHO05D008970 7.4e-20 101.3 66 74.2
Eucgr.K00669 Eucalyptus grandis HOM05D007186 ORTHO05D008970 7.7e-17 91.3 72 58.3
Mapoly0123s0026 Marchantia polymorpha HOM05D007186 ORTHO05D008970 1.3e-16 90.5 145 34.5
arahy.Tifrunner.gnm1.ann1.5R4F72 Arachis hypogaea HOM05D007186 ORTHO05D008970 6.5e-16 88.2 114 46.5
Sopen05g025410 Solanum pennellii HOM05D007186 ORTHO05D008970 1.6e-14 83.6 44 90.9
MD17G1110300 Malus domestica HOM05D007186 ORTHO05D008970 3.7e-11 72.4 42 83.3
AT2G04790 Arabidopsis thaliana HOM05D007186 ORTHO05D008970 1.8e-10 70.1 60 60.0
MCO11G099 Micromonas commoda HOM05D007186 ORTHO05D008970 3.4e-09 65.9 160 27.5
Thhalv10002943m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 1.9e-07 60.1 71 43.7


User provided reference genes

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