Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3451 Fragaria x ananassa HOM05D001596 ORTHO05D007454 1.6e-140 502.7 246 100.0
FAN09G2972 Fragaria x ananassa HOM05D001596 ORTHO05D007454 3.6e-132 474.9 264 90.2
FAN02G3139 Fragaria x ananassa HOM05D001596 ORTHO05D007454 7.4e-117 424.1 385 62.6
FAN05G3728 Fragaria x ananassa HOM05D001596 ORTHO05D007454 9.6e-117 423.7 385 62.6
FAN14G3752 Fragaria x ananassa HOM05D001596 ORTHO05D007454 1.8e-115 419.5 385 62.3
FvH4_6g47530 Fragaria vesca HOM05D001596 ORTHO05D007454 5.3e-115 417.9 385 62.1
RcHm_v2.0_Chr2g0166601 Rosa chinensis HOM05D001596 ORTHO05D007454 6.7e-102 374.4 397 55.2
RcHm_v2.0_Chr6g0268991 Rosa chinensis HOM05D001596 ORTHO05D007454 8.2e-100 367.5 385 56.1
MD17G1056300 Malus domestica HOM05D001596 ORTHO05D007454 9.1e-91 337.4 385 52.2
MD09G1060900 Malus domestica HOM05D001596 ORTHO05D007454 1.7e-89 333.2 385 52.2
Prupe.3G259200 Prunus persica HOM05D001596 ORTHO05D007454 2.7e-87 325.9 374 50.5
Dinv33807 Davidia involucrata HOM05D001596 ORTHO05D007454 1.7e-81 306.6 388 47.4
VMungo1383G1350 Vigna mungo HOM05D001596 ORTHO05D007454 2.2e-81 306.2 387 46.0
CiPaw.03G091700 Carya illinoinensis HOM05D001596 ORTHO05D007454 1.9e-80 303.1 385 46.8
Phvul.008G036300 Phaseolus vulgaris HOM05D001596 ORTHO05D007454 1.9e-80 303.1 387 45.7
Manes.02G050801 Manihot esculenta HOM05D001596 ORTHO05D007454 2.7e-79 299.3 388 46.1
ClCG10G015410 Citrullus lanatus HOM05D001596 ORTHO05D007454 8.0e-79 297.7 385 47.3
Lalb_Chr17g0337091 Lupinus albus HOM05D001596 ORTHO05D007454 1.0e-78 297.4 388 45.6
MELO3C009840.2 Cucumis melo HOM05D001596 ORTHO05D007454 1.4e-78 297.0 392 46.9
CsaV3_3G041100 Cucumis sativus L. HOM05D001596 ORTHO05D007454 3.0e-78 295.8 385 47.0
QL02p039390 Quercus lobata HOM05D001596 ORTHO05D007454 1.5e-77 293.5 385 46.5
Cpa.g.sc14.140 Carica papaya HOM05D001596 ORTHO05D007454 3.4e-77 292.4 393 45.0
QL02p039646 Quercus lobata HOM05D001596 ORTHO05D007454 5.7e-77 291.6 385 46.2
Lj1g0022114 Lotus japonicus HOM05D001596 ORTHO05D007454 4.8e-76 288.5 385 44.9
Cfa007621 Carpinus fangiana HOM05D001596 ORTHO05D007454 1.1e-75 287.3 372 46.0
Gohir.A11G071400 Gossypium hirsutum HOM05D001596 ORTHO05D007454 1.4e-75 287.0 385 46.0
Gorai.007G081000 Gossypium raimondii HOM05D001596 ORTHO05D007454 1.4e-75 287.0 385 46.0
arahy.Tifrunner.gnm1.ann1.PFF9RU Arachis hypogaea HOM05D001596 ORTHO05D007454 1.8e-75 286.6 381 44.4
arahy.Tifrunner.gnm1.ann1.RG9N1V Arachis hypogaea HOM05D001596 ORTHO05D007454 1.8e-75 286.6 381 44.4
TPR.G33449 Trifolium pratense HOM05D001596 ORTHO05D007454 2.4e-75 286.2 385 45.5
Psat3g198440 Pisum sativum HOM05D001596 ORTHO05D007454 3.1e-75 285.8 385 44.4
Glyma.08G241500 Glycine max HOM05D001596 ORTHO05D007454 9.1e-75 284.3 387 43.4
PGR083G0116 Punica granatum HOM05D001596 ORTHO05D007454 1.6e-74 283.5 387 45.0
Duzib147G0136 Durio zibethinus HOM05D001596 ORTHO05D007454 2.7e-74 282.7 387 45.2
Thecc.04G090400 Theobroma cacao HOM05D001596 ORTHO05D007454 2.7e-74 282.7 374 46.0
TWI32G0402 Tripterygium wilfordii HOM05D001596 ORTHO05D007454 2.7e-74 282.7 388 44.8
Medtr7g012250 Medicago truncatula HOM05D001596 ORTHO05D007454 3.5e-74 282.3 387 44.7
PSO478G2046 Papaver somniferum HOM05D001596 ORTHO05D007454 1.0e-73 280.8 375 44.8
Potri.017G089700 Populus trichocarpa HOM05D001596 ORTHO05D007454 1.3e-73 280.4 396 44.2
TWI60G0862 Tripterygium wilfordii HOM05D001596 ORTHO05D007454 1.3e-73 280.4 388 44.3
TAR374G0779 Trochodendron aralioides HOM05D001596 ORTHO05D007454 1.3e-73 280.4 368 46.5
Duzib264G1014 Durio zibethinus HOM05D001596 ORTHO05D007454 2.9e-73 279.3 387 45.0
Sed0001933 Sechium edule HOM05D001596 ORTHO05D007454 6.5e-73 278.1 385 43.4
Aqoxy3G00463 Aquilegia oxysepala HOM05D001596 ORTHO05D007454 3.2e-72 275.8 359 45.7
Lju41A7T38 Lonicera japonica HOM05D001596 ORTHO05D007454 5.5e-72 275.0 412 42.0
Nn4g23337 Nelumbo nucifera HOM05D001596 ORTHO05D007454 5.5e-72 275.0 373 44.5
Ciclev10011769m.g Citrus clementina HOM05D001596 ORTHO05D007454 7.2e-72 274.6 358 45.0
CANSAT64G0989 Cannabis sativa HOM05D001596 ORTHO05D007454 1.2e-71 273.9 399 44.1
Migut.H00656 Erythranthe guttata HOM05D001596 ORTHO05D007454 1.2e-71 273.9 363 44.1
Eucgr.J01367 Eucalyptus grandis HOM05D001596 ORTHO05D007454 1.0e-70 270.8 390 42.8
PGSC0003DMG400023092 Solanum tuberosum HOM05D001596 ORTHO05D007454 1.4e-70 270.4 382 43.2
Sc04g0005110 Simmondsia chinensis HOM05D001596 ORTHO05D007454 1.8e-70 270.0 385 44.4
Cc07_g03840 Coffea canephora HOM05D001596 ORTHO05D007454 2.3e-70 269.6 385 42.6
Hma1.2p1_1813F.1_g303840 Hydrangea macrophylla HOM05D001596 ORTHO05D007454 5.2e-70 268.5 363 44.9
SEGI_18695 Sequoiadendron giganteum HOM05D001596 ORTHO05D007454 1.2e-69 267.3 361 44.0
ATR0111G021 Amborella trichopoda HOM05D001596 ORTHO05D007454 1.5e-69 266.9 383 43.3
HPP92_007741 Vanilla planifolia HOM05D001596 ORTHO05D007454 1.5e-69 266.9 385 40.0
Haze_14474 Corylus avellana HOM05D001596 ORTHO05D007454 2.0e-69 266.5 438 39.0
Sopen03g012490 Solanum pennellii HOM05D001596 ORTHO05D007454 5.7e-69 265.0 355 44.5
Solyc03g013310.3 Solanum lycopersicum HOM05D001596 ORTHO05D007454 7.5e-69 264.6 355 44.2
CARHR262960 Cardamine hirsuta HOM05D001596 ORTHO05D007454 1.4e-67 260.4 384 41.4
SalBow1G0648 Salvia bowleyana HOM05D001596 ORTHO05D007454 5.4e-67 258.5 363 43.0
A04p12090 Brassica napus HOM05D001596 ORTHO05D007454 7.0e-67 258.1 388 42.0
BraA04t16874Z Brassica rapa HOM05D001596 ORTHO05D007454 7.0e-67 258.1 388 42.0
BcaB06g27323 Brassica carinata HOM05D001596 ORTHO05D007454 1.6e-66 256.9 388 42.3
AL7G50930 Arabidopsis lyrata HOM05D001596 ORTHO05D007454 2.0e-66 256.5 384 41.4
Thhalv10027783m.g Eutrema salsugineum HOM05D001596 ORTHO05D007454 3.5e-66 255.8 388 41.5
Rhsim08G0073300 Rhododendron simsii HOM05D001596 ORTHO05D007454 4.5e-66 255.4 422 39.8
C04p45720 Brassica napus HOM05D001596 ORTHO05D007454 1.3e-65 253.8 388 41.8
AT5G39400 Arabidopsis thaliana HOM05D001596 ORTHO05D007454 1.7e-65 253.4 384 40.9
Atru.chr8.373 Acer truncatum HOM05D001596 ORTHO05D007454 2.3e-65 253.1 337 45.7
Carub.0007s3654 Capsella rubella HOM05D001596 ORTHO05D007454 3.8e-65 252.3 384 39.6
vmacro18163 Vaccinium macrocarpon HOM05D001596 ORTHO05D007454 1.1e-64 250.8 419 39.9
Sp7g02580 Schrenkiella parvula HOM05D001596 ORTHO05D007454 2.5e-64 249.6 361 41.6
BcaB06g27297 Brassica carinata HOM05D001596 ORTHO05D007454 5.6e-64 248.4 388 41.2
BolC4t26157H Brassica oleracea HOM05D001596 ORTHO05D007454 5.6e-64 248.4 388 41.2
BcaB02g07985 Brassica carinata HOM05D001596 ORTHO05D007454 9.5e-64 247.7 390 40.3
PSO017G0157 Papaver somniferum HOM05D001596 ORTHO05D007454 2.1e-63 246.5 337 43.6
BraA07t29696Z Brassica rapa HOM05D001596 ORTHO05D007454 3.6e-63 245.7 390 40.3
A07p19970 Brassica napus HOM05D001596 ORTHO05D007454 4.7e-63 245.4 390 40.3
Aa31LG9G16590 Aethionema arabicum HOM05D001596 ORTHO05D007454 8.0e-63 244.6 355 41.7
BcaC08g44416 Brassica carinata HOM05D001596 ORTHO05D007454 8.0e-63 244.6 390 40.0
C06p18530 Brassica napus HOM05D001596 ORTHO05D007454 8.0e-63 244.6 390 40.0
BolC6t37066H Brassica oleracea HOM05D001596 ORTHO05D007454 8.0e-63 244.6 390 40.0
THA.LOC104805493 Tarenaya hassleriana HOM05D001596 ORTHO05D007454 3.4e-61 239.2 386 39.4
Oeu062142.1 Olea europaea HOM05D001596 ORTHO05D007454 2.2e-60 236.5 337 42.4
Nitab4.5_0005196g0030 Nicotiana tabacum HOM05D001596 ORTHO05D007454 2.4e-59 233.0 362 42.5
SGA_v2.0_scaffold413G51159 Striga asiatica HOM05D001596 ORTHO05D007454 7.3e-56 221.5 300 43.7
SEGI_14678 Sequoiadendron giganteum HOM05D001596 ORTHO05D007454 2.8e-55 219.5 360 38.1
RcHm_v2.0_Chr5g0056761 Rosa chinensis HOM05D001596 ORTHO05D007454 1.8e-54 216.9 200 60.5
Nitab4.5_0001637g0100 Nicotiana tabacum HOM05D001596 ORTHO05D007454 3.1e-54 216.1 357 40.9
SMO118G0408 Selaginella moellendorffii HOM05D001596 ORTHO05D007454 8.9e-54 214.5 360 37.5
Peaxi162Scf00451g00420 Petunia axillaris HOM05D001596 ORTHO05D007454 1.9e-51 206.8 161 68.9
HanXRQChr15g0473081 Helianthus annuus HOM05D001596 ORTHO05D007454 2.7e-50 203.0 344 39.5
Lsat_1_v5_gn_3_98880 Lactuca sativa HOM05D001596 ORTHO05D007454 1.3e-49 200.7 345 39.1
COL.COLO4_07429 Corchorus olitorius HOM05D001596 ORTHO05D007454 9.5e-48 194.5 327 39.8
CSS0015839 Camellia sinensis var. sinensis HOM05D001596 ORTHO05D007454 6.2e-47 191.8 230 49.1
Gohir.D11G075400 Gossypium hirsutum HOM05D001596 ORTHO05D007454 8.1e-47 191.4 227 50.2
ECA246G1680 Erigeron canadensis HOM05D001596 ORTHO05D007454 2.6e-45 186.4 344 36.6
Lalb_Chr04g0258551 Lupinus albus HOM05D001596 ORTHO05D007454 1.3e-44 184.1 203 52.2
SGA_v2.0_scaffold413G51158 Striga asiatica HOM05D001596 ORTHO05D007454 3.7e-44 182.6 339 38.9
Actinidia17573 Actinidia chinensis HOM05D001596 ORTHO05D007454 8.3e-44 181.4 186 54.3
CBR_g29865 Chara braunii HOM05D001596 ORTHO05D007454 4.6e-42 175.6 356 33.4
Mapoly0058s0093 Marchantia polymorpha HOM05D001596 ORTHO05D007454 4.0e-38 162.5 318 33.3
GSVIVG01011486001 Vitis vinifera HOM05D001596 ORTHO05D007454 6.8e-38 161.8 184 50.5
Lalb_Chr04g0258561 Lupinus albus HOM05D001596 ORTHO05D007454 6.4e-36 155.2 99 68.7
CiPaw.04G058900 Carya illinoinensis HOM05D001596 ORTHO05D007454 5.4e-35 152.1 279 38.7
Lsat_1_v5_gn_3_98721 Lactuca sativa HOM05D001596 ORTHO05D007454 7.1e-35 151.8 319 33.9
Lsat_1_v5_gn_3_98761 Lactuca sativa HOM05D001596 ORTHO05D007454 3.5e-34 149.4 317 33.4
FAN09G0681 Fragaria x ananassa HOM05D001596 ORTHO05D007454 4.6e-34 149.1 71 100.0
Lsat_1_v5_gn_7_89141 Lactuca sativa HOM05D001596 ORTHO05D007454 9.6e-32 141.4 306 33.7
GSVIVG01011485001 Vitis vinifera HOM05D001596 ORTHO05D007454 9.6e-32 141.4 99 67.7
DCAR_005555 Daucus carota HOM05D001596 ORTHO05D007454 6.9e-30 135.2 96 62.5
Ca_06803_v3 Cicer arietinum L. HOM05D001596 ORTHO05D007454 2.6e-29 133.3 274 35.0
DCAR_005554 Daucus carota HOM05D001596 ORTHO05D007454 7.8e-26 121.7 99 61.6
arahy.Tifrunner.gnm1.ann1.854N7M Arachis hypogaea HOM05D001596 ORTHO05D007454 2.5e-24 116.7 153 44.4
RcHm_v2.0_Chr5g0056771 Rosa chinensis HOM05D001596 ORTHO05D007454 2.8e-23 113.2 67 83.6
unitig_62.g23435 Utricularia gibba HOM05D001596 ORTHO05D007454 1.4e-22 110.9 99 56.6
AagrBONN_evm.TU.Sc2ySwM_228.4578 Anthoceros agrestis HOM05D001596 ORTHO05D007454 1.1e-16 91.3 286 27.6
Lsat_1_v5_gn_3_98660 Lactuca sativa HOM05D001596 ORTHO05D007454 1.5e-16 90.9 208 34.1
Mapoly0117s0012 Marchantia polymorpha HOM05D001596 ORTHO05D007454 1.3e-15 87.8 163 33.7
PRCOL_00000060 Prasinoderma coloniale HOM05D001596 ORTHO05D007454 2.7e-10 70.1 173 28.9
Cre06.g308400 Chlamydomonas reinhardtii HOM05D001596 ORTHO05D007454 6.7e-09 65.5 171 28.7
unitig_62.g23436 Utricularia gibba HOM05D001596 ORTHO05D007454 2.5e-08 63.5 40 72.5
AUR62010267 Chenopodium quinoa HOM05D001596 ORTHO05D002857 4.3e-08 62.8 314 22.3
HanXRQChr04g0128111 Helianthus annuus HOM05D001596 ORTHO05D002857 8.1e-07 58.5 314 21.3
unitig_744.g24373 Utricularia gibba HOM05D001596 ORTHO05D002857 8.1e-07 58.5 273 23.8
ECA236G4159 Erigeron canadensis HOM05D001596 ORTHO05D002857 4.0e-06 56.2 312 21.2
DCAR_029077 Daucus carota HOM05D001596 ORTHO05D002857 5.3e-06 55.8 314 21.0
BolC3t17333H Brassica oleracea HOM05D001596 ORTHO05D002857 6.9e-06 55.5 128 29.7
AUR62013248 Chenopodium quinoa HOM05D001596 ORTHO05D002857 6.9e-06 55.5 162 26.5
EL10Ac6g15699 Beta vulgaris HOM05D001596 ORTHO05D002857 9.0e-06 55.1 304 22.0
Lsat_1_v5_gn_9_111380 Lactuca sativa HOM05D001596 ORTHO05D002857 9.0e-06 55.1 314 21.0
Potri.001G302000 Populus trichocarpa HOM05D001596 ORTHO05D002857 9.0e-06 55.1 314 20.7
RcHm_v2.0_Chr2g0106491 Rosa chinensis HOM05D001596 ORTHO05D002857 9.0e-06 55.1 169 24.9


User provided reference genes

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