Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.1e-171 606.7 326 100.0
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 1.3e-156 556.6 349 88.3
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 2.1e-151 539.3 349 85.4
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 3.7e-124 448.7 349 73.1
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 6.1e-119 431.4 349 71.3
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 2.4e-115 419.5 349 69.9
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 3.0e-110 402.5 352 65.9
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 8.9e-110 401.0 352 65.9
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 2.6e-109 399.4 351 65.8
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 7.8e-106 387.9 352 63.9
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.0e-105 387.5 350 64.9
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.0e-105 386.0 352 65.1
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.9e-105 385.6 352 65.1
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 1.2e-103 380.6 353 64.0
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.1e-102 377.5 352 64.2
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.1e-102 377.5 353 63.7
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 8.9e-102 374.4 349 62.5
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 4.9e-100 368.6 206 95.1
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.2e-98 364.0 351 62.4
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 6.0e-98 361.7 349 60.5
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 5.0e-97 358.6 349 62.5
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.9e-96 356.7 350 61.4
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.9e-96 356.7 349 60.2
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 2.5e-96 356.3 361 60.4
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 3.3e-96 355.9 340 62.4
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 3.3e-96 355.9 351 61.5
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 5.6e-96 355.1 351 61.0
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 5.6e-96 355.1 354 62.4
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 7.3e-96 354.8 353 58.4
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 9.5e-96 354.4 353 60.9
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 2.8e-95 352.8 353 58.9
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 8.9e-94 347.8 349 61.6
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.2e-93 347.4 352 61.4
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 2.6e-93 346.3 365 59.2
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 4.4e-93 345.5 353 56.9
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 4.4e-93 345.5 352 59.7
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 5.8e-93 345.1 360 58.1
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.1e-91 340.9 354 59.0
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.1e-91 340.9 354 59.0
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 1.9e-91 340.1 353 59.5
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 2.4e-91 339.7 349 61.0
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 7.1e-91 338.2 358 58.9
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 7.1e-91 338.2 349 57.6
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 1.2e-90 337.4 355 58.0
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 2.7e-90 336.3 353 58.1
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.0e-89 334.3 353 57.8
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 1.7e-89 333.6 352 58.2
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 8.6e-89 331.3 349 57.9
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 2.5e-88 329.7 353 55.5
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.2e-87 327.4 373 56.3
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 2.8e-87 326.2 353 57.2
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 2.8e-87 326.2 349 57.6
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.8e-87 326.2 353 55.8
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 3.6e-87 325.9 351 57.3
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 3.6e-87 325.9 357 57.4
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 6.2e-87 325.1 353 55.5
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 8.1e-87 324.7 353 56.7
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.1e-86 324.3 353 56.4
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 2.4e-86 323.2 354 56.5
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 3.1e-86 322.8 341 58.1
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 4.0e-86 322.4 349 58.5
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 5.2e-86 322.0 352 57.4
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 8.9e-86 321.2 353 56.4
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 1.5e-85 320.5 354 55.4
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 2.6e-85 319.7 419 49.2
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 4.4e-85 318.9 351 57.5
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 5.8e-85 318.5 353 56.1
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 9.9e-85 317.8 353 56.1
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 9.9e-85 317.8 353 56.9
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.7e-84 317.0 354 55.6
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 2.2e-84 316.6 353 56.1
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 2.9e-84 316.2 358 55.3
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 1.9e-83 313.5 365 55.1
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 2.4e-83 313.2 353 56.4
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 2.4e-83 313.2 353 56.4
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 4.1e-83 312.4 356 55.1
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 5.4e-83 312.0 343 56.6
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 1.2e-82 310.8 352 54.8
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 1.6e-82 310.5 343 56.3
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 3.0e-81 306.2 403 50.6
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 8.7e-81 304.7 353 55.5
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 8.7e-81 304.7 353 55.5
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 1.5e-80 303.9 353 55.2
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 3.3e-80 302.8 353 54.7
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 2.1e-79 300.1 340 53.5
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 9.0e-78 294.7 357 55.2
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 9.9e-77 291.2 341 56.3
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 2.2e-76 290.0 348 53.2
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 2.9e-76 289.7 352 54.0
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 9.3e-75 284.6 340 52.9
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 1.2e-74 284.3 305 59.0
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 1.3e-73 280.8 374 50.8
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 1.5e-72 277.3 338 53.0
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 1.1e-70 271.2 345 49.6
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 9.0e-70 268.1 377 47.5
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 1.5e-69 267.3 346 51.7
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.1e-67 261.2 252 60.3
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 2.4e-67 260.0 143 95.1
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 3.5e-66 256.1 293 56.0
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.3e-57 227.6 352 46.6
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 9.6e-56 221.5 205 63.4
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 5.3e-54 215.7 204 61.8
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.0e-52 211.5 207 61.4
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.1e-51 208.0 343 44.0
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 3.5e-50 203.0 330 45.2
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 2.9e-44 183.3 204 53.9
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 2.4e-38 163.7 235 47.2
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.3e-36 157.9 135 65.9
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 1.4e-35 154.5 292 38.7
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 1.4e-33 147.9 115 69.6
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 3.9e-33 146.4 187 52.4
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.1e-32 144.8 215 44.7
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.1e-32 144.8 211 45.0
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 7.4e-32 142.1 96 71.9
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 6.3e-31 139.0 380 32.6
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 2.0e-29 134.0 73 93.2
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 3.2e-27 126.7 301 35.5
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 1.2e-26 124.8 213 45.1
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 3.0e-25 120.2 308 35.4
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 5.7e-24 115.9 367 30.8
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 4.1e-22 109.8 103 63.1
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 5.3e-22 109.4 85 74.1
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 8.5e-20 102.1 279 36.6
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 5.5e-19 99.4 94 58.5
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 6.1e-18 95.9 229 38.9
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 2.6e-16 90.5 66 78.8
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 7.0e-14 82.4 97 48.5
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 1.2e-13 81.6 67 70.1
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 6.5e-12 75.9 126 43.7
FvH4_4g27140 Fragaria vesca HOM05D063885 ORTHO05D046237 2.7e-10 70.5 49 77.6
RcHm_v2.0_Chr2g0163681 Rosa chinensis HOM05D005714 ORTHO05D006812 2.7e-10 70.5 64 67.2
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 2.6e-08 63.9 46 71.7
RcHm_v2.0_Chr2g0163651 Rosa chinensis HOM05D005714 ORTHO05D006812 1.3e-07 61.6 58 67.2
FAN12G1388 Fragaria x ananassa HOM05D063885 ORTHO05D046237 3.7e-07 60.1 101 44.6
MD11G1231800 Malus domestica HOM05D005714 ORTHO05D006812 4.8e-07 59.7 47 70.2
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 8.3e-07 58.9 137 38.7
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 2.4e-06 57.4 128 39.1


User provided reference genes

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