Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3409 Fragaria x ananassa HOM05D007348 ORTHO05D009257 3.7e-67 258.1 131 100.0
FvH4_6g13360 Fragaria vesca HOM05D007348 ORTHO05D009257 3.0e-64 248.4 131 96.2
FAN14G5390 Fragaria x ananassa HOM05D007348 ORTHO05D009257 3.0e-64 248.4 131 96.2
FAN05G4426 Fragaria x ananassa HOM05D007348 ORTHO05D009257 1.9e-63 245.7 131 96.2
FAN02G3968 Fragaria x ananassa HOM05D007348 ORTHO05D009257 1.1e-61 240.0 131 94.7
RcHm_v2.0_Chr3g0466241 Rosa chinensis HOM05D007348 ORTHO05D009257 2.2e-59 232.3 133 89.5
Prupe.6G258300 Prunus persica HOM05D007348 ORTHO05D009257 3.8e-43 178.3 138 71.7
MD12G1144800 Malus domestica HOM05D007348 ORTHO05D009257 9.3e-42 173.7 129 71.3
MD04G1131700 Malus domestica HOM05D007348 ORTHO05D009257 3.9e-40 168.3 129 69.0
Ciclev10013090m.g Citrus clementina HOM05D007348 ORTHO05D009257 3.3e-39 165.2 120 70.8
TAR636G0176 Trochodendron aralioides HOM05D007348 ORTHO05D009257 3.3e-39 165.2 138 65.9
Gorai.006G171200 Gossypium raimondii HOM05D007348 ORTHO05D009257 9.6e-39 163.7 100 81.0
CSS0018490 Camellia sinensis var. sinensis HOM05D007348 ORTHO05D009257 1.3e-38 163.3 140 67.1
CANSAT35G0511 Cannabis sativa HOM05D007348 ORTHO05D009257 1.3e-38 163.3 140 65.0
TAR636G2125 Trochodendron aralioides HOM05D007348 ORTHO05D009257 1.6e-38 162.9 138 65.2
Thecc.05G036200 Theobroma cacao HOM05D007348 ORTHO05D009257 2.1e-38 162.5 142 65.5
Dinv37151 Davidia involucrata HOM05D007348 ORTHO05D009257 2.8e-38 162.2 140 64.3
TWI77G0545 Tripterygium wilfordii HOM05D007348 ORTHO05D009257 2.8e-38 162.2 104 76.0
Atru.chr8.2007 Acer truncatum HOM05D007348 ORTHO05D009257 6.2e-38 161.0 95 81.1
COL.COLO4_14769 Corchorus olitorius HOM05D007348 ORTHO05D009257 8.1e-38 160.6 142 64.8
Cfa017345 Carpinus fangiana HOM05D007348 ORTHO05D009257 1.4e-37 159.8 111 74.8
Gohir.D09G150000 Gossypium hirsutum HOM05D007348 ORTHO05D009257 1.4e-37 159.8 135 65.9
Gohir.A09G154300 Gossypium hirsutum HOM05D007348 ORTHO05D009257 2.4e-37 159.1 100 78.0
LjContig00141g0000939 Lotus japonicus HOM05D007348 ORTHO05D009257 2.4e-37 159.1 120 70.0
Potri.006G087701 Populus trichocarpa HOM05D007348 ORTHO05D009257 3.1e-37 158.7 100 79.0
ClCG10G021280 Citrullus lanatus HOM05D007348 ORTHO05D009257 4.0e-37 158.3 137 63.5
Manes.08G081300 Manihot esculenta HOM05D007348 ORTHO05D009257 5.3e-37 157.9 101 77.2
Nitab4.5_0008097g0010 Nicotiana tabacum HOM05D007348 ORTHO05D009257 6.9e-37 157.5 134 63.4
GSVIVG01034135001 Vitis vinifera HOM05D007348 ORTHO05D009257 6.9e-37 157.5 132 62.9
CiPaw.09G195200 Carya illinoinensis HOM05D007348 ORTHO05D009257 9.0e-37 157.1 106 76.4
PGSC0003DMG400019150 Solanum tuberosum HOM05D007348 ORTHO05D009257 9.0e-37 157.1 129 65.1
Cc06_g02390 Coffea canephora HOM05D007348 ORTHO05D009257 1.2e-36 156.8 142 62.0
Cpa.g.sc169.14 Carica papaya HOM05D007348 ORTHO05D009257 2.0e-36 156.0 123 67.5
Eucgr.K03108 Eucalyptus grandis HOM05D007348 ORTHO05D009257 2.0e-36 156.0 134 64.9
QL07p048913 Quercus lobata HOM05D007348 ORTHO05D009257 2.0e-36 156.0 99 77.8
Lalb_Chr01g0022591 Lupinus albus HOM05D007348 ORTHO05D009257 2.6e-36 155.6 93 80.6
Peaxi162Scf00330g00089 Petunia axillaris HOM05D007348 ORTHO05D009257 2.6e-36 155.6 93 83.9
Migut.L01962 Erythranthe guttata HOM05D007348 ORTHO05D009257 3.4e-36 155.2 129 62.8
Lsat_1_v5_gn_9_32101 Lactuca sativa HOM05D007348 ORTHO05D009257 3.4e-36 155.2 125 65.6
Actinidia11269 Actinidia chinensis HOM05D007348 ORTHO05D009257 4.4e-36 154.8 137 62.0
CAN.G92.20 Capsicum annuum HOM05D007348 ORTHO05D009257 7.6e-36 154.1 127 65.4
ECA247G0870 Erigeron canadensis HOM05D007348 ORTHO05D009257 7.6e-36 154.1 91 80.2
Nitab4.5_0000527g0200 Nicotiana tabacum HOM05D007348 ORTHO05D009257 7.6e-36 154.1 131 63.4
A10p33440 Brassica napus HOM05D007348 ORTHO05D009257 2.2e-35 152.5 118 68.6
BraA10t45374Z Brassica rapa HOM05D007348 ORTHO05D009257 2.2e-35 152.5 118 68.6
Oeu006894.1 Olea europaea HOM05D007348 ORTHO05D009257 2.9e-35 152.1 126 66.7
Sopen10g035960 Solanum pennellii HOM05D007348 ORTHO05D009257 2.9e-35 152.1 126 61.1
CsaV3_3G034760 Cucumis sativus L. HOM05D007348 ORTHO05D009257 3.8e-35 151.8 137 62.0
Sabra06G0067000 Salix brachista HOM05D007348 ORTHO05D009257 4.9e-35 151.4 93 77.4
HanXRQChr10g0298181 Helianthus annuus HOM05D007348 ORTHO05D009257 6.4e-35 151.0 125 64.0
MELO3C009245.2 Cucumis melo HOM05D007348 ORTHO05D009257 1.1e-34 150.2 137 60.6
C09p74340 Brassica napus HOM05D007348 ORTHO05D009257 1.4e-34 149.8 130 61.5
BolC9t60168H Brassica oleracea HOM05D007348 ORTHO05D009257 1.4e-34 149.8 130 61.5
Ah.12g059960 Amaranthus hybridus HOM05D007348 ORTHO05D009257 1.9e-34 149.4 92 81.5
arahy.Tifrunner.gnm1.ann1.HF038C Arachis hypogaea HOM05D007348 ORTHO05D009257 1.9e-34 149.4 102 72.5
arahy.Tifrunner.gnm1.ann1.IF8W7F Arachis hypogaea HOM05D007348 ORTHO05D009257 1.9e-34 149.4 102 72.5
CDE04G2102 Ceratophyllum demersum HOM05D000082 ORTHO05D001639 1.9e-34 149.4 139 55.4
Solyc10g086570.3 Solanum lycopersicum HOM05D007348 ORTHO05D009257 1.9e-34 149.4 127 61.4
Ca_25900_v3 Cicer arietinum L. HOM05D007348 ORTHO05D009257 2.4e-34 149.1 136 64.7
vmacro20175 Vaccinium macrocarpon HOM05D007348 ORTHO05D009257 2.4e-34 149.1 143 60.1
PGR004G1504 Punica granatum HOM05D007348 ORTHO05D009257 3.2e-34 148.7 90 78.9
Haze_20824 Corylus avellana HOM05D007348 ORTHO05D009257 4.2e-34 148.3 128 64.1
Migut.J00309 Erythranthe guttata HOM05D007348 ORTHO05D009257 4.2e-34 148.3 105 69.5
THA.LOC104816258 Tarenaya hassleriana HOM05D007348 ORTHO05D009257 4.2e-34 148.3 130 63.1
Hund09099 Selenicereus undatus HOM05D007348 ORTHO05D009257 5.4e-34 147.9 91 78.0
SEGI_32371 Sequoiadendron giganteum HOM05D007348 ORTHO05D009257 5.4e-34 147.9 106 70.8
SGA_v2.0_scaffold94G28573 Striga asiatica HOM05D007348 ORTHO05D009257 5.4e-34 147.9 94 79.8
AT5G02160 Arabidopsis thaliana HOM05D007348 ORTHO05D009257 7.1e-34 147.5 120 69.2
Sed0022418 Sechium edule HOM05D007348 ORTHO05D009257 7.1e-34 147.5 90 78.9
unitig_21.g21015 Utricularia gibba HOM05D007348 ORTHO05D009257 9.3e-34 147.1 110 70.0
CDE07G1011 Ceratophyllum demersum HOM05D007348 ORTHO05D009257 2.1e-33 146.0 95 72.6
MBI14_g08036_MAGBIO Magnolia biondii HOM05D007348 ORTHO05D009257 2.1e-33 146.0 133 60.9
Nn2g13409 Nelumbo nucifera HOM05D007348 ORTHO05D009257 2.7e-33 145.6 112 66.1
Aqoxy1G00895 Aquilegia oxysepala HOM05D007348 ORTHO05D009257 3.5e-33 145.2 95 72.6
AUR62042385 Chenopodium quinoa HOM05D007348 ORTHO05D009257 3.5e-33 145.2 91 74.7
Phvul.008G118700 Phaseolus vulgaris HOM05D007348 ORTHO05D009257 3.5e-33 145.2 94 76.6
Glyma.18G184000 Glycine max HOM05D007348 ORTHO05D009257 4.6e-33 144.8 139 59.0
Sp6g40280 Schrenkiella parvula HOM05D007348 ORTHO05D009257 4.6e-33 144.8 105 70.5
ATR0559G267 Amborella trichopoda HOM05D007348 ORTHO05D009257 6.0e-33 144.4 89 77.5
Duzib093G0801 Durio zibethinus HOM05D007348 ORTHO05D009257 6.0e-33 144.4 89 78.7
Glyma.07G134500 Glycine max HOM05D007348 ORTHO05D009257 6.0e-33 144.4 141 58.9
Duzib106G1977 Durio zibethinus HOM05D007348 ORTHO05D009257 7.9e-33 144.1 85 82.4
Sc01g0004470 Simmondsia chinensis HOM05D007348 ORTHO05D009257 1.0e-32 143.7 123 61.0
EL10As1g23094 Beta vulgaris HOM05D007348 ORTHO05D009257 2.3e-32 142.5 130 62.3
VMungo1383G1736 Vigna mungo HOM05D007348 ORTHO05D009257 2.3e-32 142.5 94 75.5
AL6G11390 Arabidopsis lyrata HOM05D007348 ORTHO05D009257 3.0e-32 142.1 84 83.3
CARHR211200 Cardamine hirsuta HOM05D007348 ORTHO05D009257 5.1e-32 141.4 118 63.6
PSO339G0488 Papaver somniferum HOM05D007348 ORTHO05D009257 6.6e-32 141.0 95 70.5
Carub.0006s0100 Capsella rubella HOM05D007348 ORTHO05D009257 8.7e-32 140.6 84 82.1
Thhalv10014990m.g Eutrema salsugineum HOM05D007348 ORTHO05D009257 1.1e-31 140.2 82 82.9
PSO063G2704 Papaver somniferum HOM05D007348 ORTHO05D009257 1.1e-31 140.2 111 64.0
Aa31LG1G22570 Aethionema arabicum HOM05D007348 ORTHO05D009257 2.5e-31 139.0 134 59.7
Psat3g137840 Pisum sativum HOM05D007348 ORTHO05D009257 4.3e-31 138.3 138 58.0
Zm00001eb355890 Zea mays HOM05D007348 ORTHO05D009257 5.6e-31 137.9 86 75.6
Medtr7g062470 Medicago truncatula HOM05D007348 ORTHO05D009257 9.6e-31 137.1 83 77.1
Pp3c3_5420 Physcomitrium patens HOM05D007348 ORTHO05D009257 3.1e-29 132.1 125 52.8
Pp3c13_7350 Physcomitrium patens HOM05D007348 ORTHO05D009257 6.9e-29 131.0 95 67.4
Os05g0110100 Oryza sativa ssp. japonica HOM05D007348 ORTHO05D009257 1.5e-28 129.8 132 56.1
HPP92_026789 Vanilla planifolia HOM05D007348 ORTHO05D009257 5.8e-28 127.9 83 74.7
SMO174G0219 Selaginella moellendorffii HOM05D007348 ORTHO05D009257 1.9e-26 122.9 88 64.8
Mapoly0046s0114 Marchantia polymorpha HOM05D007348 ORTHO05D009257 5.5e-26 121.3 86 68.6
CBR_g52180 Chara braunii HOM05D007348 ORTHO05D009257 1.3e-22 110.2 118 52.5
CANSAT35G1486 Cannabis sativa HOM05D007348 ORTHO05D009257 6.9e-21 104.4 128 50.8
TPR.G27019 Trifolium pratense HOM05D007348 ORTHO05D009257 3.9e-16 88.6 45 86.7
HPP92_000744 Vanilla planifolia HOM05D007348 ORTHO05D009257 6.3e-14 81.3 123 41.5
AagrBONN_evm.TU.Sc2ySwM_117.386 Anthoceros agrestis HOM05D007348 ORTHO05D009257 4.6e-09 65.1 39 76.9
TPR.G1710 Trifolium pratense HOM05D007348 ORTHO05D009257 1.8e-08 63.2 90 47.8


User provided reference genes

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