Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 2593.5 1347 100.0
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 2470.7 1314 97.6
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 2448.7 1314 97.0
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 2364.7 1337 91.5
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 2126.7 1340 82.5
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 2069.7 1341 81.3
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1927.9 1338 75.8
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1925.2 1332 75.8
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 0.0e+00 1911.0 1343 73.9
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1897.1 1328 74.5
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1896.7 1358 73.4
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1892.1 1345 74.0
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1888.6 1356 72.9
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1887.8 1343 74.2
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1877.1 1345 73.8
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 0.0e+00 1876.7 1347 73.9
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1871.7 1343 73.9
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 0.0e+00 1863.2 1371 72.1
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1861.3 1308 74.3
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1857.4 1347 72.5
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1853.2 1347 72.5
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 0.0e+00 1852.8 1347 72.4
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1852.8 1342 71.8
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 0.0e+00 1842.8 1342 71.1
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 0.0e+00 1818.5 1309 72.2
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 0.0e+00 1817.0 1340 71.5
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 0.0e+00 1815.8 1349 70.8
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 0.0e+00 1813.1 1311 72.4
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 0.0e+00 1806.6 1335 70.7
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1804.6 1340 70.9
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 0.0e+00 1798.5 1349 71.0
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 0.0e+00 1796.6 1366 69.6
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 0.0e+00 1792.3 1348 70.5
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1788.5 1356 69.7
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 0.0e+00 1787.7 1325 71.5
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 0.0e+00 1781.1 1353 70.7
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 0.0e+00 1779.6 1347 70.6
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 0.0e+00 1772.7 1353 68.8
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 1770.4 1348 70.0
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1768.4 1351 69.3
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 0.0e+00 1767.3 1307 70.8
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 0.0e+00 1764.6 1268 71.4
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1763.8 1357 68.0
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1762.7 1347 69.0
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1760.7 1268 71.1
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1760.7 1268 71.1
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 0.0e+00 1760.3 1302 70.1
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 0.0e+00 1760.0 1320 70.6
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1758.8 1275 70.7
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 0.0e+00 1758.4 1274 71.1
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1758.0 1357 67.9
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 0.0e+00 1757.7 1350 67.6
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 0.0e+00 1757.3 1343 69.6
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1756.5 1357 67.9
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1756.5 1357 67.9
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 0.0e+00 1756.5 1293 71.2
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 0.0e+00 1756.1 1263 71.7
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 0.0e+00 1755.7 1292 71.5
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1754.2 1274 70.4
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 0.0e+00 1753.0 1339 69.7
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1751.5 1345 69.3
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 0.0e+00 1749.2 1340 69.2
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1748.0 1351 68.8
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 0.0e+00 1747.6 1357 68.5
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1743.0 1167 77.8
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 0.0e+00 1742.6 1340 67.5
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 0.0e+00 1740.3 1361 69.1
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 0.0e+00 1735.3 1345 68.6
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1733.0 1350 67.3
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 0.0e+00 1731.8 1350 69.2
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 0.0e+00 1730.7 1352 69.0
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 0.0e+00 1728.8 1334 69.5
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1727.2 1347 68.2
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1725.7 1381 66.6
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 0.0e+00 1724.9 1486 64.1
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 0.0e+00 1720.7 1333 68.6
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 0.0e+00 1718.4 1267 69.6
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1716.0 1263 70.4
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1709.5 1263 69.9
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1704.1 1343 68.2
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 0.0e+00 1699.1 1363 66.3
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 0.0e+00 1695.2 1347 66.7
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1689.1 1420 63.9
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1680.2 1269 70.2
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 0.0e+00 1659.0 1328 67.8
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1649.4 1343 65.7
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 0.0e+00 1640.6 1374 64.3
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 0.0e+00 1615.1 1322 66.1
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 0.0e+00 1587.0 1125 74.5
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1583.2 1132 73.9
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1581.6 1388 63.0
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 0.0e+00 1557.7 1136 70.5
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 0.0e+00 1552.3 1345 61.3
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1548.1 827 97.6
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 0.0e+00 1545.4 1359 61.0
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1541.6 1279 64.2
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 0.0e+00 1489.6 1186 66.9
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1463.4 1200 66.6
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 0.0e+00 1449.1 1228 62.6
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 0.0e+00 1406.3 1371 55.9
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 0.0e+00 1395.9 1105 67.3
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 0.0e+00 1327.0 1344 55.4
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1241.1 1158 60.4
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 0.0e+00 1124.0 1344 47.8
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 0.0e+00 1085.1 777 73.1
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 3.1e-302 1042.3 1360 44.7
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 8.0e-298 1027.7 1257 45.3
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 1.8e-294 1016.5 1292 43.9
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 1.1e-286 990.7 1237 44.5
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 1.7e-255 887.1 801 62.7
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 1.6e-245 854.0 1278 40.9
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.5e-182 642.9 661 54.9
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 3.3e-166 590.5 1295 32.3
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 4.3e-166 590.1 1174 30.9
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 1.3e-159 568.5 548 59.5
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 2.5e-150 537.7 346 84.4
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 2.7e-120 438.0 358 64.5
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 3.2e-89 334.7 1148 25.8
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 9.1e-76 290.0 273 60.8
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 9.1e-76 290.0 273 60.8
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 3.6e-72 278.1 1109 23.6
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 4.0e-63 248.1 270 55.9
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 3.1e-60 238.4 131 95.4
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 8.6e-58 230.3 1316 23.3
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.6e-56 224.9 207 58.0
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.0e-54 219.2 207 58.0
MBI13_g41314_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.3e-53 216.5 207 56.5
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.6e-50 204.1 177 60.5
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.2e-48 197.6 167 66.5
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.2e-48 197.6 167 66.5
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 3.1e-47 195.3 189 54.5
SEGI_14640 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 9.8e-46 190.3 224 44.2
SHI28279 Sapria himalayana HOM05D004602 ORTHO05D005906 1.7e-45 189.5 162 62.3
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 4.3e-41 174.9 155 60.6
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 6.8e-39 167.5 118 72.0
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.2e-38 166.8 140 66.4
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 6.4e-29 134.4 98 69.4
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.4e-28 133.3 98 71.4
MBI15_g38850_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.2e-27 130.2 142 54.9
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.5e-25 123.2 103 68.0
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.5e-25 123.2 101 69.3
MBI13_g46003_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.1e-23 117.1 107 57.9
HanXRQChr05g0161121 Helianthus annuus HOM05D004602 ORTHO05D005906 7.6e-22 110.9 91 65.9
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 6.4e-21 107.8 61 85.2
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.4e-21 107.5 71 77.5
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 9.3e-20 104.0 64 85.9
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 4.6e-19 101.7 66 80.3
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 4.6e-19 101.7 66 80.3
PGSC0003DMG400020858 Solanum tuberosum HOM05D004602 ORTHO05D005906 5.1e-18 98.2 108 54.6
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.8e-16 92.4 69 66.7
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 4.8e-16 91.7 67 67.2
Rhsim06G0100000 Rhododendron simsii HOM05D004602 ORTHO05D005906 3.1e-15 89.0 96 46.9
PGSC0003DMG400020862 Solanum tuberosum HOM05D004602 ORTHO05D005906 1.2e-14 87.0 87 59.8
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.0e-14 86.3 64 68.8
MELO3C029978.2 Cucumis melo HOM05D004602 ORTHO05D000002 2.2e-13 82.8 68 64.7
Haze_19711 Corylus avellana HOM05D055146 ORTHO05D044793 1.1e-12 80.5 93 50.5
COL.COLO4_34262 Corchorus olitorius HOM05D004602 ORTHO05D014120 6.0e-11 74.7 82 52.4
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 1.3e-10 73.6 64 57.8
CAN.G2894.1 Capsicum annuum HOM05D012840 ORTHO05D015021 9.6e-09 67.4 96 47.9
GSVIVG01034310001 Vitis vinifera HOM05D013764 ORTHO05D014120 1.2e-06 60.5 67 55.2
GSVIVG01034319001 Vitis vinifera HOM05D013764 ORTHO05D014120 1.2e-06 60.5 67 55.2
GSVIVG01000678001 Vitis vinifera HOM05D013764 ORTHO05D014120 2.0e-06 59.7 67 55.2
GSVIVG01001885001 Vitis vinifera HOM05D013764 ORTHO05D014120 2.6e-06 59.3 67 55.2
GSVIVG01003576001 Vitis vinifera HOM05D013764 ORTHO05D014120 2.6e-06 59.3 67 53.7
GSVIVG01001876001 Vitis vinifera HOM05D013764 ORTHO05D014120 3.4e-06 58.9 67 53.7
GSVIVG01003891001 Vitis vinifera HOM05D013764 ORTHO05D014120 5.8e-06 58.2 60 56.7


User provided reference genes

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