Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.9e-127 459.1 229 100.0
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.8e-93 346.3 179 98.3
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 5.3e-93 344.7 179 97.8
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.5e-92 343.2 179 97.2
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 3.4e-92 342.0 179 97.2
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.2e-90 335.5 193 90.7
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 2.3e-88 329.3 180 92.8
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 2.0e-87 326.2 179 92.2
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 9.7e-87 323.9 179 91.6
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 2.4e-85 319.3 179 89.9
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 5.3e-85 318.2 179 90.5
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 9.1e-85 317.4 179 89.9
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.2e-84 317.0 179 90.5
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.2e-84 317.0 191 84.8
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 2.6e-84 315.8 179 88.8
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 2.6e-84 315.8 179 88.3
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 4.5e-84 315.1 179 89.4
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 4.5e-84 315.1 179 89.9
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.9e-84 314.7 179 88.3
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 5.9e-84 314.7 179 88.8
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 1.0e-83 313.9 179 88.8
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.7e-83 313.2 179 87.7
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.7e-83 313.2 179 87.7
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.7e-83 313.2 179 87.7
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.7e-83 313.2 179 88.3
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 2.2e-83 312.8 179 88.3
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.2e-83 312.8 179 87.7
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.2e-83 312.8 179 88.3
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 3.8e-83 312.0 179 87.2
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 3.8e-83 312.0 182 86.8
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 5.0e-83 311.6 179 87.7
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 6.5e-83 311.2 179 87.7
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 6.5e-83 311.2 179 86.6
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 8.5e-83 310.8 179 87.2
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.4e-82 310.1 179 86.6
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.9e-82 309.7 189 85.7
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 1.9e-82 309.7 179 88.3
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 2.5e-82 309.3 180 88.3
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 3.2e-82 308.9 179 86.6
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 3.2e-82 308.9 179 86.6
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 3.2e-82 308.9 179 86.6
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 4.2e-82 308.5 181 88.4
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 5.5e-82 308.1 179 84.4
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 7.2e-82 307.8 179 86.0
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 9.4e-82 307.4 179 86.0
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 9.4e-82 307.4 179 85.5
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 9.4e-82 307.4 179 85.5
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 9.4e-82 307.4 179 88.3
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.2e-81 307.0 179 86.0
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.1e-81 306.2 179 85.5
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 2.7e-81 305.8 180 86.7
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 2.7e-81 305.8 179 85.5
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 3.6e-81 305.4 179 85.5
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 3.6e-81 305.4 179 85.5
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 3.6e-81 305.4 176 88.6
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 3.6e-81 305.4 179 85.5
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.7e-81 305.1 179 87.2
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 7.9e-81 304.3 180 85.6
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 7.9e-81 304.3 180 86.7
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.0e-80 303.9 179 84.4
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.0e-80 303.9 179 84.9
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 1.8e-80 303.1 178 87.1
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.3e-80 302.8 181 85.1
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 2.3e-80 302.8 177 84.2
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 3.0e-80 302.4 179 86.6
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 3.9e-80 302.0 179 85.5
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 6.7e-80 301.2 179 83.8
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 6.7e-80 301.2 179 83.8
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.1e-79 300.4 176 86.9
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 2.0e-79 299.7 184 82.6
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 2.6e-79 299.3 176 86.9
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.3e-79 298.9 180 82.2
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 4.4e-79 298.5 180 83.9
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 4.4e-79 298.5 179 82.1
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 5.7e-79 298.1 179 84.9
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 9.7e-79 297.4 198 78.3
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 9.7e-79 297.4 198 78.3
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.3e-78 297.0 179 84.9
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.2e-78 296.2 179 82.7
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 2.2e-78 296.2 177 84.7
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 2.8e-78 295.8 179 83.8
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 2.8e-78 295.8 179 83.8
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.8e-78 295.8 178 83.1
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 3.7e-78 295.4 179 83.8
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.8e-78 295.0 179 83.2
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 4.8e-78 295.0 182 84.1
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 6.3e-78 294.7 182 83.0
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 6.3e-78 294.7 179 83.8
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.1e-77 293.9 177 86.4
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 1.8e-77 293.1 182 81.9
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 3.1e-77 292.4 178 82.6
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.1e-77 292.0 180 81.7
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.2e-76 290.4 179 80.4
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 2.0e-76 289.7 182 80.8
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 2.0e-76 289.7 182 83.0
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 3.5e-76 288.9 178 83.1
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 4.5e-76 288.5 178 82.6
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 4.5e-76 288.5 179 79.9
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.9e-76 288.1 179 81.0
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 7.7e-76 287.7 180 83.9
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.0e-75 287.3 181 81.8
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 1.7e-75 286.6 179 79.3
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.7e-75 286.6 179 79.3
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 2.2e-75 286.2 180 82.2
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 5.0e-75 285.0 189 77.8
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 6.5e-75 284.6 179 79.9
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.4e-74 283.5 180 78.9
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.4e-74 283.5 179 80.4
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 1.2e-73 280.4 178 81.5
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 4.7e-73 278.5 180 78.9
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 6.1e-73 278.1 232 65.9
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.3e-72 276.2 182 79.1
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 7.4e-71 271.2 184 76.6
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 9.7e-71 270.8 179 74.9
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 1.2e-68 263.8 198 71.2
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 4.5e-68 261.9 159 84.9
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 5.9e-68 261.5 179 73.2
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.7e-67 260.0 179 73.2
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 4.2e-66 255.4 177 70.1
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 2.7e-65 252.7 181 73.5
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.1e-65 251.5 179 74.3
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.4e-64 250.4 168 76.2
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 5.2e-64 248.4 140 90.0
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 2.6e-63 246.1 181 72.9
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 2.8e-62 242.7 167 73.7
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 8.3e-62 241.1 138 89.1
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 7.0e-61 238.0 160 78.1
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.7e-60 236.1 179 69.8
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 5.9e-60 235.0 179 70.9
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.0e-59 234.2 163 73.0
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 5.0e-59 231.9 175 69.7
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 1.1e-58 230.7 139 83.5
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.2e-57 227.3 178 64.0
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 3.6e-57 225.7 176 63.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.8e-54 216.1 169 64.5
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 4.8e-54 215.3 183 61.2
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 2.4e-53 213.0 177 59.3
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.2e-52 210.7 119 87.4
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 1.6e-52 210.3 165 66.1
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 1.3e-46 190.7 173 58.4
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 2.4e-45 186.4 188 61.2
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.5e-44 182.2 96 92.7
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 2.3e-43 179.9 97 89.7
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 9.5e-42 174.5 120 79.2
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.5e-39 167.2 174 50.0
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 8.3e-30 134.8 82 82.9
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 2.7e-28 129.8 62 98.4
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 6.6e-27 125.2 62 93.5
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 7.3e-26 121.7 86 77.9
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.7e-22 110.5 73 80.8
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.1e-12 77.0 39 87.2
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.1e-08 64.7 31 87.1
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.4e-08 63.5 31 83.9


User provided reference genes

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