Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.8e-79 298.5 148 100.0
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 2.0e-77 292.4 148 97.3
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.0e-77 292.4 148 97.3
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.7e-76 289.3 148 97.3
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 2.2e-71 272.3 148 91.2
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 4.4e-64 248.1 148 82.4
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 6.3e-63 244.2 148 81.8
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 5.3e-62 241.1 148 81.1
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.5e-59 232.3 126 88.9
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 2.6e-56 222.2 149 76.5
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 1.2e-53 213.4 171 67.8
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 5.9e-53 211.1 149 71.8
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 1.9e-51 206.1 149 71.8
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 2.1e-50 202.6 148 68.9
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 2.7e-50 202.2 149 71.1
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.5e-48 196.4 149 67.8
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 2.8e-47 192.2 144 70.1
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 8.3e-47 190.7 150 66.0
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 1.4e-46 189.9 150 66.0
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 5.4e-46 188.0 149 65.8
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 3.8e-44 181.8 148 62.8
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 5.0e-44 181.4 150 66.0
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 1.9e-43 179.5 160 62.5
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 4.2e-43 178.3 148 64.2
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 5.5e-43 177.9 149 63.1
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 2.1e-42 176.0 148 60.8
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 2.1e-42 176.0 149 61.7
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 4.7e-42 174.9 148 60.1
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 6.1e-42 174.5 149 61.7
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 8.0e-42 174.1 148 62.2
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 8.0e-42 174.1 148 60.1
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 1.0e-41 173.7 147 63.3
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 1.8e-41 172.9 146 64.4
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 3.0e-41 172.2 146 58.9
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 4.0e-41 171.8 148 60.8
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 1.5e-40 169.9 156 60.9
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 2.6e-40 169.1 150 62.7
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 3.4e-40 168.7 149 61.7
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 4.4e-40 168.3 150 60.7
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 4.4e-40 168.3 148 60.8
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 5.7e-40 167.9 148 60.8
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 1.3e-39 166.8 149 61.7
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 1.3e-39 166.8 149 61.7
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 1.3e-39 166.8 151 61.6
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 1.7e-39 166.4 147 60.5
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 2.2e-39 166.0 151 57.0
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 2.8e-39 165.6 150 61.3
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 6.3e-39 164.5 150 62.0
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 1.1e-38 163.7 148 59.5
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 1.8e-38 162.9 149 59.7
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 1.8e-38 162.9 150 60.0
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 1.8e-38 162.9 150 61.3
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 2.4e-38 162.5 150 61.3
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 4.1e-38 161.8 150 60.7
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 4.1e-38 161.8 150 61.3
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 1.6e-37 159.8 151 59.6
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.6e-37 159.8 152 60.5
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.5e-37 158.7 146 58.2
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 4.5e-37 158.3 154 59.7
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 4.5e-37 158.3 151 59.6
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 5.9e-37 157.9 152 59.9
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 1.0e-36 157.1 154 57.1
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 1.7e-36 156.4 98 78.6
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 2.9e-36 155.6 150 61.3
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.8e-36 155.2 149 56.4
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 3.8e-36 155.2 152 59.2
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 6.6e-36 154.5 151 60.3
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.5e-35 153.3 142 59.2
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 1.5e-35 153.3 153 60.1
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 9.5e-35 150.6 153 53.6
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 2.1e-34 149.4 150 52.7
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 2.1e-34 149.4 148 55.4
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 2.1e-34 149.4 150 58.0
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 2.1e-34 149.4 152 54.6
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 2.8e-34 149.1 148 56.1
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 4.7e-34 148.3 148 58.8
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 6.1e-34 147.9 159 57.2
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 6.1e-34 147.9 150 56.0
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 8.0e-34 147.5 150 55.3
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.4e-33 146.7 148 55.4
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 1.4e-33 146.7 146 54.1
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 1.8e-33 146.4 148 58.1
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 5.2e-33 144.8 124 56.5
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 1.2e-32 143.7 124 59.7
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 1.2e-32 143.7 143 56.6
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.5e-32 143.3 148 54.7
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 2.0e-32 142.9 141 58.9
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 2.6e-32 142.5 151 55.0
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 5.8e-32 141.4 171 51.5
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 7.5e-32 141.0 154 54.5
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 7.5e-32 141.0 142 56.3
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 2.2e-31 139.4 97 74.2
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 2.9e-31 139.0 163 54.0
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 2.9e-31 139.0 130 51.5
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 8.3e-31 137.5 161 52.2
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.4e-30 136.7 159 51.6
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 4.1e-30 135.2 152 52.0
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 6.0e-29 131.3 170 47.6
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 3.9e-28 128.6 156 48.7
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 1.6e-26 123.2 125 52.8
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 3.6e-26 122.1 147 51.7
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 4.0e-25 118.6 125 55.2
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 1.2e-24 117.1 92 62.0
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 2.2e-23 112.8 126 54.8
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 1.4e-22 110.2 93 60.2
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.2e-22 109.0 126 47.6
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 7.8e-21 104.4 149 41.6
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 1.5e-19 100.1 172 41.3
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 4.3e-19 98.6 157 38.9
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 5.6e-19 98.2 129 44.2
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 3.6e-18 95.5 91 52.7
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 8.9e-17 90.9 148 45.3
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 2.6e-16 89.4 75 61.3
FAN25G2302 Fragaria x ananassa HOM05D000283 ORTHO05D000358 9.9e-16 87.4 61 73.8
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.9e-14 83.2 117 39.3
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 3.2e-14 82.4 95 45.3
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 1.6e-13 80.1 91 47.3
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 2.1e-13 79.7 132 37.9
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 1.5e-11 73.6 63 58.7
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 1.6e-10 70.1 60 58.3
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 3.6e-10 68.9 93 46.2
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 4.7e-10 68.6 93 45.2
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 1.8e-09 66.6 97 42.3
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 1.8e-09 66.6 128 34.4
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 5.2e-09 65.1 78 48.7
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 5.2e-09 65.1 55 58.2
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 2.0e-08 63.2 102 39.2
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 2.9e-07 59.3 42 66.7
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 8.4e-07 57.8 58 46.6
CSS0050070 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 1.9e-06 56.6 72 43.1
Sc15g0000290 Simmondsia chinensis HOM05D006233 ORTHO05D007247 3.2e-06 55.8 132 31.8


User provided reference genes

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