Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3243 Fragaria x ananassa HOM05D005989 ORTHO05D011902 3.2e-86 321.6 153 100.0
RcHm_v2.0_Chr2g0129631 Rosa chinensis HOM05D005989 ORTHO05D000651 4.7e-37 158.3 197 43.7
RcHm_v2.0_Chr5g0000531 Rosa chinensis HOM05D000985 ORTHO05D011902 6.4e-34 147.9 195 40.0
RcHm_v2.0_Chr5g0077831 Rosa chinensis HOM05D005989 ORTHO05D011902 1.2e-29 133.7 153 47.1
RcHm_v2.0_Chr6g0299951 Rosa chinensis HOM05D005989 ORTHO05D000022 1.4e-28 130.2 146 47.3
FAN02G4316 Fragaria x ananassa HOM05D005989 ORTHO05D011902 1.8e-28 129.8 80 80.0
FAN27G0615 Fragaria x ananassa HOM05D005989 ORTHO05D011902 1.5e-27 126.7 89 73.0
RcHm_v2.0_Chr1g0361641 Rosa chinensis HOM05D013124 ORTHO05D011902 2.4e-25 119.4 163 38.0
FvH4_3g24991 Fragaria vesca HOM05D005989 ORTHO05D000022 7.0e-25 117.9 162 39.5
RcHm_v2.0_Chr6g0264461 Rosa chinensis HOM05D005989 ORTHO05D000022 6.6e-23 111.3 147 43.5
RcHm_v2.0_Chr1g0352021 Rosa chinensis HOM05D005989 ORTHO05D000022 4.3e-22 108.6 147 43.5
FAN05G1543 Fragaria x ananassa HOM05D005989 ORTHO05D011902 1.6e-21 106.7 236 30.5
Prupe.4G283800 Prunus persica HOM05D005989 ORTHO05D000651 4.0e-20 102.1 193 31.6
FAN02G2557 Fragaria x ananassa HOM05D015921 ORTHO05D011902 5.2e-20 101.7 61 82.0
FAN01G2791 Fragaria x ananassa HOM05D005989 ORTHO05D017036 5.4e-17 91.7 104 52.9
RcHm_v2.0_Chr7g0184971 Rosa chinensis HOM05D005989 ORTHO05D000022 2.7e-16 89.4 64 64.1
Atru.chr1.2142 Acer truncatum HOM05D000003 ORTHO05D000022 2.3e-15 86.3 194 29.9
Prupe.1G484600 Prunus persica HOM05D005989 ORTHO05D000022 8.6e-15 84.3 138 38.4
RcHm_v2.0_Chr3g0459251 Rosa chinensis HOM05D005989 ORTHO05D000022 8.6e-15 84.3 63 63.5
RcHm_v2.0_Chr4g0395061 Rosa chinensis HOM05D005989 ORTHO05D000022 8.6e-15 84.3 63 63.5
FAN09G2075 Fragaria x ananassa HOM05D005989 ORTHO05D011902 1.2e-13 80.5 64 54.7
RcHm_v2.0_Chr5g0070711 Rosa chinensis HOM05D013124 ORTHO05D011902 1.2e-13 80.5 80 45.0
Atru.chr9.192 Acer truncatum HOM05D005989 ORTHO05D000022 2.1e-13 79.7 143 35.0
Atru.chr2.1816 Acer truncatum HOM05D000003 ORTHO05D000022 2.8e-13 79.3 194 28.9
Atru.chr3.1897 Acer truncatum HOM05D000003 ORTHO05D000651 2.8e-13 79.3 194 29.4
FAN11G2120 Fragaria x ananassa HOM05D013124 ORTHO05D011902 2.3e-12 76.3 66 51.5
FAN25G1024 Fragaria x ananassa HOM05D013124 ORTHO05D011902 2.3e-12 76.3 151 31.1
Atru.chr10.504 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-12 75.5 166 31.9
Atru.chr8.558 Acer truncatum HOM05D000003 ORTHO05D000022 5.2e-12 75.1 163 29.4
TPR.G13740 Trifolium pratense HOM05D005989 ORTHO05D000022 8.9e-12 74.3 84 42.9
RcHm_v2.0_Chr3g0462451 Rosa chinensis HOM05D005989 ORTHO05D000022 2.0e-11 73.2 179 30.2
FAN24G3501 Fragaria x ananassa HOM05D007346 ORTHO05D009044 2.6e-11 72.8 58 56.9
RcHm_v2.0_Chr3g0465511 Rosa chinensis HOM05D000155 ORTHO05D000022 7.6e-11 71.2 196 28.1
RcHm_v2.0_Chr4g0409421 Rosa chinensis HOM05D005989 ORTHO05D000022 7.6e-11 71.2 58 58.6
RcHm_v2.0_Chr7g0185631 Rosa chinensis HOM05D000155 ORTHO05D000022 7.6e-11 71.2 196 28.1
FAN04G1848 Fragaria x ananassa HOM05D000007 ORTHO05D011902 9.9e-11 70.9 62 51.6
RcHm_v2.0_Chr2g0160431 Rosa chinensis HOM05D000003 ORTHO05D000004 1.3e-10 70.5 196 27.6
RcHm_v2.0_Chr6g0278601 Rosa chinensis HOM05D000003 ORTHO05D000004 1.7e-10 70.1 58 56.9
Atru.chr8.108 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-10 69.7 185 27.0
FAN03G2046 Fragaria x ananassa HOM05D008445 ORTHO05D011083 2.2e-10 69.7 78 38.5
RcHm_v2.0_Chr2g0167951 Rosa chinensis HOM05D005989 ORTHO05D000022 2.9e-10 69.3 81 44.4
Atru.chr3.1839 Acer truncatum HOM05D005989 ORTHO05D000022 8.4e-10 67.8 166 31.3
RcHm_v2.0_Chr3g0453641 Rosa chinensis HOM05D000003 ORTHO05D000004 1.1e-09 67.4 196 27.0
RcHm_v2.0_Chr7g0206171 Rosa chinensis HOM05D005989 ORTHO05D000022 5.4e-09 65.1 60 53.3
FvH4_4g01331 Fragaria vesca HOM05D005989 ORTHO05D000022 2.1e-08 63.2 48 50.0
FvH4_5g27541 Fragaria vesca HOM05D005989 ORTHO05D000022 2.1e-08 63.2 60 48.3
FvH4_7g14701 Fragaria vesca HOM05D000021 ORTHO05D000010 2.1e-08 63.2 65 46.2
RcHm_v2.0_Chr2g0120021 Rosa chinensis HOM05D005989 ORTHO05D000022 2.1e-08 63.2 58 50.0
RcHm_v2.0_Chr1g0316991 Rosa chinensis HOM05D005989 ORTHO05D000022 2.7e-08 62.8 58 50.0
MD07G1021300 Malus domestica HOM05D000155 ORTHO05D000022 7.8e-08 61.2 200 25.5
FvH4_3g39131 Fragaria vesca HOM05D005989 ORTHO05D000022 1.0e-07 60.8 197 25.9
MD13G1019000 Malus domestica HOM05D000155 ORTHO05D000022 1.0e-07 60.8 199 25.6
Medtr8g479410 Medicago truncatula HOM05D005989 ORTHO05D000022 1.3e-07 60.5 58 44.8
RcHm_v2.0_Chr6g0258241 Rosa chinensis HOM05D005989 ORTHO05D000022 1.3e-07 60.5 48 52.1
Lalb_Chr21g0306271 Lupinus albus HOM05D005989 ORTHO05D000022 1.7e-07 60.1 171 26.9
Atru.chr9.329 Acer truncatum HOM05D005989 ORTHO05D000022 2.3e-07 59.7 56 55.4
FvH4_6g09211 Fragaria vesca HOM05D000003 ORTHO05D000651 3.0e-07 59.3 185 27.0
Atru.chr5.1911 Acer truncatum HOM05D005989 ORTHO05D000022 3.9e-07 58.9 62 51.6
PSO832G3439 Papaver somniferum HOM05D005989 ORTHO05D000022 1.1e-06 57.4 143 29.4
RcHm_v2.0_Chr3g0472841 Rosa chinensis HOM05D000155 ORTHO05D000022 1.1e-06 57.4 61 49.2
PSO063G2465 Papaver somniferum HOM05D005989 ORTHO05D000022 1.5e-06 57.0 58 48.3
Psat0s1775g0320 Pisum sativum HOM05D005989 ORTHO05D000022 1.9e-06 56.6 161 28.0
RcHm_v2.0_Chr7g0237631 Rosa chinensis HOM05D005989 ORTHO05D000022 1.9e-06 56.6 49 57.1
Atru.chr1.1636 Acer truncatum HOM05D005989 ORTHO05D000022 2.5e-06 56.2 64 45.3
RcHm_v2.0_Chr3g0470951 Rosa chinensis HOM05D005989 ORTHO05D000022 2.5e-06 56.2 44 61.4
Atru.chr2.2454 Acer truncatum HOM05D005989 ORTHO05D000022 3.3e-06 55.8 64 45.3
RcHm_v2.0_Chr4g0417481 Rosa chinensis HOM05D005989 ORTHO05D000022 3.3e-06 55.8 65 44.6
Lalb_Chr08g0232201 Lupinus albus HOM05D005989 ORTHO05D000022 7.3e-06 54.7 60 48.3
RcHm_v2.0_Chr4g0393351 Rosa chinensis HOM05D000155 ORTHO05D000022 9.6e-06 54.3 165 29.1


User provided reference genes

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