Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.5e-283 977.6 499 100.0
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 9.6e-281 969.5 499 99.0
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.3e-279 963.8 499 98.6
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.6e-275 950.7 499 97.8
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 1.6e-251 872.5 504 89.5
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.3e-250 869.4 498 91.2
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 9.5e-204 713.8 509 75.4
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 1.6e-203 713.0 511 75.0
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 1.2e-201 706.8 504 75.4
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 2.7e-198 695.7 515 72.6
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 1.3e-197 693.3 517 74.1
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 1.3e-197 693.3 514 73.5
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 4.3e-196 688.3 511 73.4
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 2.1e-195 686.0 511 71.8
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 1.4e-194 683.3 516 71.1
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 1.8e-194 682.9 511 72.8
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 2.3e-194 682.6 510 70.0
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 4.0e-194 681.8 510 70.4
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 9.8e-193 677.2 516 70.5
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 9.8e-193 677.2 518 70.8
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 1.1e-191 673.7 511 70.6
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 3.2e-191 672.2 519 71.1
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 4.1e-191 671.8 520 69.6
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 3.5e-190 668.7 515 70.5
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 6.0e-190 667.9 508 69.5
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 2.8e-187 659.1 519 68.6
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 2.8e-187 659.1 514 70.4
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 6.2e-187 657.9 515 67.8
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 5.8e-185 651.4 511 67.5
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 7.1e-183 644.4 512 69.9
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 1.2e-182 643.7 507 67.7
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 6.0e-182 641.3 510 68.2
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 1.0e-181 640.6 514 69.5
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.3e-181 640.2 510 69.0
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 2.3e-181 639.4 505 70.3
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 3.9e-181 638.6 513 69.8
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 5.1e-181 638.3 506 68.0
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 5.1e-181 638.3 509 67.8
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 9.5e-180 634.0 522 68.2
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 9.5e-180 634.0 515 66.4
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 9.5e-180 634.0 512 69.1
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 2.1e-179 632.9 510 68.0
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 6.2e-179 631.3 510 68.6
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 6.2e-179 631.3 518 67.4
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 1.1e-178 630.6 523 66.7
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 1.1e-178 630.6 511 68.1
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 6.8e-178 627.9 507 66.5
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 2.0e-177 626.3 512 66.4
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 2.6e-177 625.9 526 65.8
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 5.8e-177 624.8 511 67.1
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 7.6e-177 624.4 512 66.2
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 7.6e-177 624.4 510 68.0
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.3e-176 623.6 514 66.7
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 1.7e-176 623.2 518 66.8
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 6.4e-176 621.3 509 66.2
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 1.1e-175 620.5 518 66.4
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 1.9e-175 619.8 516 66.7
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 2.4e-175 619.4 509 66.8
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 4.1e-175 618.6 516 65.7
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 1.6e-174 616.7 504 66.9
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 2.7e-174 615.9 515 66.4
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 6.0e-174 614.8 506 66.6
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 1.3e-173 613.6 503 66.6
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 1.1e-172 610.5 517 66.3
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 1.5e-172 610.1 512 65.6
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 1.5e-172 610.1 502 66.1
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 1.5e-172 610.1 516 65.5
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 3.3e-172 609.0 533 64.4
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 5.6e-172 608.2 517 66.0
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 5.6e-172 608.2 509 66.8
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 5.6e-172 608.2 521 66.6
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 2.1e-171 606.3 519 66.1
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 2.8e-171 605.9 514 65.6
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 4.7e-171 605.1 516 65.1
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 6.2e-171 604.7 516 64.9
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 8.1e-171 604.4 512 66.0
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.4e-170 603.6 522 64.4
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 1.8e-170 603.2 511 65.0
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 5.2e-170 601.7 504 66.3
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 5.2e-170 601.7 504 66.1
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 8.9e-170 600.9 515 66.4
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 1.2e-169 600.5 517 63.8
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 1.5e-169 600.1 515 66.2
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 2.0e-169 599.7 506 65.6
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 2.0e-169 599.7 502 66.7
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 4.4e-169 598.6 502 66.5
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 7.1e-167 591.3 508 64.0
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 9.3e-167 590.9 467 68.7
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 2.1e-163 579.7 521 63.0
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 3.6e-163 578.9 520 64.0
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.1e-162 577.4 515 63.7
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 1.1e-162 577.4 518 63.5
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 1.5e-161 573.5 524 63.5
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 5.8e-161 571.6 511 63.0
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 1.9e-159 566.6 513 62.6
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.1e-156 557.4 466 65.2
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 4.8e-155 552.0 504 62.3
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 8.1e-155 551.2 523 59.5
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 4.9e-152 542.0 533 59.8
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 2.3e-149 533.1 533 59.1
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 3.0e-149 532.7 520 59.2
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 1.2e-145 520.8 520 57.3
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 1.2e-142 510.8 454 63.2
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 5.7e-140 501.9 518 57.3
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 9.3e-135 484.6 510 58.0
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 1.8e-133 480.3 523 56.6
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 1.8e-133 480.3 518 57.1
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 3.9e-133 479.2 523 56.6
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 2.2e-131 473.4 478 58.4
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 1.6e-126 457.2 530 53.4
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.1e-116 424.5 506 52.4
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 1.7e-115 420.6 491 53.6
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.7e-112 410.6 306 70.3
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 8.0e-110 401.7 517 48.9
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 4.1e-106 389.4 526 47.3
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 6.3e-99 365.5 507 46.0
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 7.7e-97 358.6 292 65.1
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 2.9e-88 330.1 502 44.8
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 1.2e-78 298.1 583 38.3
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 7.6e-60 235.7 283 49.8
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 3.4e-52 210.3 199 59.3
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 8.7e-48 195.7 332 38.9
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 7.6e-36 156.0 273 39.9
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.5e-34 149.8 84 86.9
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 2.1e-25 121.3 102 65.7
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 7.6e-20 102.8 525 26.7
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 7.6e-20 102.8 527 26.0
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 9.3e-18 95.9 80 65.0
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.2e-17 95.5 54 81.5
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 9.0e-13 79.3 205 31.7
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 5.9e-12 76.6 77 48.1
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.1e-09 68.2 64 56.2
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.0e-08 65.9 68 58.8


User provided reference genes

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