Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3009 Fragaria x ananassa HOM05D005441 ORTHO05D006879 2.7e-61 238.4 115 100.0
FvH4_6g24730 Fragaria vesca HOM05D005441 ORTHO05D006879 2.2e-23 112.5 70 75.7
FAN05G4498 Fragaria x ananassa HOM05D005441 ORTHO05D006879 2.2e-23 112.5 70 75.7
RcHm_v2.0_Chr3g0484281 Rosa chinensis HOM05D005441 ORTHO05D006879 3.8e-23 111.7 76 71.1
MD14G1080200 Malus domestica HOM05D005441 ORTHO05D006879 3.5e-21 105.1 87 59.8
MD12G1085300 Malus domestica HOM05D005441 ORTHO05D006879 7.9e-21 104.0 71 66.2
Prupe.7G050500 Prunus persica HOM05D005441 ORTHO05D006879 7.9e-21 104.0 76 64.5
Ciclev10007026m.g Citrus clementina HOM05D005441 ORTHO05D006879 1.6e-18 96.3 82 58.5
Haze_19745 Corylus avellana HOM05D005441 ORTHO05D006879 3.7e-18 95.1 93 50.5
Eucgr.A02298 Eucalyptus grandis HOM05D005441 ORTHO05D006879 4.8e-18 94.7 85 54.1
Potri.016G042500 Populus trichocarpa HOM05D005441 ORTHO05D006879 6.3e-18 94.4 82 56.1
Cfa016756 Carpinus fangiana HOM05D005441 ORTHO05D006879 8.2e-18 94.0 81 55.6
Eucgr.A02299 Eucalyptus grandis HOM05D005441 ORTHO05D006879 8.2e-18 94.0 95 50.5
PGR004G1247 Punica granatum HOM05D005441 ORTHO05D006879 8.2e-18 94.0 70 62.9
Dinv39675 Davidia involucrata HOM05D005441 ORTHO05D006879 1.1e-17 93.6 76 61.8
GSVIVG01033549001 Vitis vinifera HOM05D005441 ORTHO05D006879 1.8e-17 92.8 87 52.9
Atru.chr1.1186 Acer truncatum HOM05D005441 ORTHO05D006879 3.1e-17 92.0 79 54.4
Manes.08G054100 Manihot esculenta HOM05D005441 ORTHO05D006879 3.1e-17 92.0 71 62.0
Thecc.05G145600 Theobroma cacao HOM05D005441 ORTHO05D006879 4.1e-17 91.7 108 48.1
Rhsim03G0030800 Rhododendron simsii HOM05D005441 ORTHO05D006879 6.9e-17 90.9 76 61.8
SalBow6G7142 Salvia bowleyana HOM05D005441 ORTHO05D006879 9.0e-17 90.5 107 43.9
arahy.Tifrunner.gnm1.ann1.I76ATH Arachis hypogaea HOM05D005441 ORTHO05D006879 1.5e-16 89.7 81 51.9
CiPaw.09G041900 Carya illinoinensis HOM05D005441 ORTHO05D006879 1.5e-16 89.7 87 51.7
SalBow6G3742 Salvia bowleyana HOM05D005441 ORTHO05D006879 1.5e-16 89.7 73 54.8
vmacro21956 Vaccinium macrocarpon HOM05D005441 ORTHO05D006879 1.5e-16 89.7 76 60.5
GSVIVG01033547001 Vitis vinifera HOM05D005441 ORTHO05D006879 1.5e-16 89.7 70 58.6
Oeu006920.1 Olea europaea HOM05D005441 ORTHO05D006879 2.6e-16 89.0 76 55.3
CSS0036594 Camellia sinensis var. sinensis HOM05D005441 ORTHO05D006879 3.4e-16 88.6 70 58.6
Cpa.g.sc120.4 Carica papaya HOM05D005441 ORTHO05D006879 3.4e-16 88.6 81 49.4
Duzib106G1775 Durio zibethinus HOM05D005441 ORTHO05D006879 3.4e-16 88.6 108 47.2
Eucgr.A02300 Eucalyptus grandis HOM05D005441 ORTHO05D006879 3.4e-16 88.6 84 50.0
TWI53G1498 Tripterygium wilfordii HOM05D005441 ORTHO05D006879 4.5e-16 88.2 79 53.2
Gohir.D09G116100 Gossypium hirsutum HOM05D005441 ORTHO05D006879 1.0e-15 87.0 105 47.6
Sed0017425 Sechium edule HOM05D005441 ORTHO05D006879 1.0e-15 87.0 71 57.7
MSTRG.19833 Avicennia marina HOM05D005441 ORTHO05D006879 1.3e-15 86.7 86 50.0
Gorai.006G134400 Gossypium raimondii HOM05D005441 ORTHO05D006879 1.3e-15 86.7 108 47.2
QL07p005267 Quercus lobata HOM05D005441 ORTHO05D006879 1.3e-15 86.7 87 48.3
THA.LOC104826947 Tarenaya hassleriana HOM05D005441 ORTHO05D006879 1.3e-15 86.7 89 44.9
Gohir.A09G119900 Gossypium hirsutum HOM05D005441 ORTHO05D006879 1.7e-15 86.3 107 46.7
QL07p005282 Quercus lobata HOM05D005441 ORTHO05D006879 1.7e-15 86.3 70 58.6
Sc19g0008470 Simmondsia chinensis HOM05D005441 ORTHO05D006879 2.2e-15 85.9 87 50.6
Nn7g36437 Nelumbo nucifera HOM05D005441 ORTHO05D006879 2.9e-15 85.5 78 50.0
PGSC0003DMG400012721 Solanum tuberosum HOM05D005441 ORTHO05D006879 2.9e-15 85.5 80 52.5
Aqoxy2G00259 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 3.8e-15 85.1 83 47.0
QL07p005351 Quercus lobata HOM05D005441 ORTHO05D006879 3.8e-15 85.1 81 50.6
QL07p005564 Quercus lobata HOM05D005441 ORTHO05D006879 3.8e-15 85.1 70 58.6
Ciclev10005135m.g Citrus clementina HOM05D005441 ORTHO05D006879 5.0e-15 84.7 70 55.7
Os01g0941800 Oryza sativa ssp. japonica HOM05D005441 ORTHO05D006879 5.0e-15 84.7 84 48.8
Phvul.007G249800 Phaseolus vulgaris HOM05D005441 ORTHO05D006879 5.0e-15 84.7 87 49.4
Lj2A389T89 Lonicera japonica HOM05D005441 ORTHO05D006879 6.5e-15 84.3 68 58.8
Aqoxy1G03762 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 8.5e-15 84.0 83 48.2
Carub.0003s0930 Capsella rubella HOM05D005441 ORTHO05D006879 8.5e-15 84.0 73 52.1
TAR369G0103 Trochodendron aralioides HOM05D005441 ORTHO05D006879 8.5e-15 84.0 67 58.2
EL10Ac6g13153 Beta vulgaris HOM05D005441 ORTHO05D006879 1.1e-14 83.6 76 56.6
Thhalv10020902m.g Eutrema salsugineum HOM05D005441 ORTHO05D006879 1.1e-14 83.6 50 68.0
HanXRQChr14g0444951 Helianthus annuus HOM05D005441 ORTHO05D006879 1.1e-14 83.6 75 52.0
PSO210G6175 Papaver somniferum HOM05D005441 ORTHO05D006879 1.1e-14 83.6 86 46.5
Sopen04g008570 Solanum pennellii HOM05D005441 ORTHO05D006879 1.1e-14 83.6 82 50.0
Cc06_g18310 Coffea canephora HOM05D005441 ORTHO05D006879 1.4e-14 83.2 87 49.4
Medtr1g051760 Medicago truncatula HOM05D005441 ORTHO05D006879 1.4e-14 83.2 76 51.3
SalBow6G6697 Salvia bowleyana HOM05D005441 ORTHO05D006879 1.4e-14 83.2 53 64.2
Aqoxy3G01901 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 1.9e-14 82.8 52 67.3
arahy.Tifrunner.gnm1.ann1.L13VJ0 Arachis hypogaea HOM05D005441 ORTHO05D006879 1.9e-14 82.8 70 55.7
Lj3g0025341 Lotus japonicus HOM05D005441 ORTHO05D006879 1.9e-14 82.8 79 50.6
QL05p004724 Quercus lobata HOM05D005441 ORTHO05D006879 1.9e-14 82.8 70 57.1
Migut.J01709 Erythranthe guttata HOM05D005441 ORTHO05D006879 2.5e-14 82.4 75 49.3
PSO832G1452 Papaver somniferum HOM05D005441 ORTHO05D006879 2.5e-14 82.4 75 52.0
VMungo0720G1530 Vigna mungo HOM05D005441 ORTHO05D006879 3.2e-14 82.0 76 53.9
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 4.2e-14 81.6 52 71.2
Aqoxy5G02961 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 4.2e-14 81.6 42 81.0
Hund05910 Selenicereus undatus HOM05D005441 ORTHO05D006879 4.2e-14 81.6 68 55.9
COL.COLO4_21308 Corchorus olitorius HOM05D005441 ORTHO05D006879 5.5e-14 81.3 50 70.0
QL10p044609 Quercus lobata HOM05D005441 ORTHO05D006879 5.5e-14 81.3 70 55.7
QL10p045538 Quercus lobata HOM05D005441 ORTHO05D006879 5.5e-14 81.3 70 55.7
Hund19127 Selenicereus undatus HOM05D005441 ORTHO05D006879 5.5e-14 81.3 70 55.7
AL3G21480 Arabidopsis lyrata HOM05D005441 ORTHO05D006879 7.2e-14 80.9 66 54.5
Peaxi162Scf00130g00934 Petunia axillaris HOM05D005441 ORTHO05D006879 7.2e-14 80.9 62 59.7
Psat6g118360 Pisum sativum HOM05D005441 ORTHO05D006879 7.2e-14 80.9 82 47.6
QL05p004537 Quercus lobata HOM05D005441 ORTHO05D006879 7.2e-14 80.9 70 54.3
QL07p005518 Quercus lobata HOM05D005441 ORTHO05D006879 7.2e-14 80.9 70 55.7
Rhsim03G0030500 Rhododendron simsii HOM05D005441 ORTHO05D006879 7.2e-14 80.9 76 55.3
TPR.G13795 Trifolium pratense HOM05D005441 ORTHO05D006879 7.2e-14 80.9 67 53.7
Nitab4.5_0001618g0230 Nicotiana tabacum HOM05D005441 ORTHO05D006879 1.2e-13 80.1 64 57.8
Sp3g08430 Schrenkiella parvula HOM05D005441 ORTHO05D006879 1.2e-13 80.1 72 52.8
Solyc04g016490.4 Solanum lycopersicum HOM05D005441 ORTHO05D006879 1.2e-13 80.1 82 48.8
AT3G10150 Arabidopsis thaliana HOM05D005441 ORTHO05D006879 1.6e-13 79.7 66 54.5
CAN.G1237.6 Capsicum annuum HOM05D005441 ORTHO05D006879 1.6e-13 79.7 71 53.5
ClCG10G015640 Citrullus lanatus HOM05D005441 ORTHO05D006879 1.6e-13 79.7 72 52.8
HPP92_014156 Vanilla planifolia HOM05D005441 ORTHO05D006879 2.1e-13 79.3 71 50.7
HPP92_014176 Vanilla planifolia HOM05D005441 ORTHO05D006879 2.1e-13 79.3 71 50.7
Ca_30943_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 2.7e-13 79.0 70 52.9
Glyma.02G192200 Glycine max HOM05D005441 ORTHO05D006879 2.7e-13 79.0 76 51.3
Ah.04g151360 Amaranthus hybridus HOM05D005441 ORTHO05D006879 3.6e-13 78.6 73 47.9
MELO3C009811.2 Cucumis melo HOM05D005441 ORTHO05D006879 3.6e-13 78.6 70 52.9
MBI19_g22482_MAGBIO Magnolia biondii HOM05D005441 ORTHO05D006879 3.6e-13 78.6 71 52.1
SEGI_21032 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 3.6e-13 78.6 62 56.5
Aa31LG3G2690 Aethionema arabicum HOM05D005441 ORTHO05D006879 4.6e-13 78.2 100 44.0
C05p57970 Brassica napus HOM05D005441 ORTHO05D006879 4.6e-13 78.2 71 54.9
Nitab4.5_0000826g0160 Nicotiana tabacum HOM05D005441 ORTHO05D006879 4.6e-13 78.2 68 58.8
A05p38950 Brassica napus HOM05D005441 ORTHO05D006879 6.1e-13 77.8 69 55.1
BraA05t22686Z Brassica rapa HOM05D005441 ORTHO05D006879 6.1e-13 77.8 69 55.1
CsaV3_3G040780 Cucumis sativus L. HOM05D005441 ORTHO05D006879 6.1e-13 77.8 70 51.4
HanXRQChr14g0444961 Helianthus annuus HOM05D005441 ORTHO05D006879 6.1e-13 77.8 55 61.8
AUR62028834 Chenopodium quinoa HOM05D005441 ORTHO05D006879 7.9e-13 77.4 68 55.9
Lalb_Chr02g0156401 Lupinus albus HOM05D005441 ORTHO05D006879 7.9e-13 77.4 85 47.1
BcaNung05908 Brassica carinata HOM05D005441 ORTHO05D006879 1.0e-12 77.0 69 55.1
BolC5t34452H Brassica oleracea HOM05D005441 ORTHO05D006879 1.0e-12 77.0 69 55.1
EL10Ac3g07155 Beta vulgaris HOM05D005441 ORTHO05D006879 1.4e-12 76.6 70 52.9
BcaNung05909 Brassica carinata HOM05D005441 ORTHO05D006879 1.4e-12 76.6 68 54.4
SEGI_17185 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 1.4e-12 76.6 73 45.2
Ca_14293_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 1.8e-12 76.3 50 64.0
Lsat_1_v5_gn_2_65661 Lactuca sativa HOM05D005441 ORTHO05D006879 2.3e-12 75.9 73 47.9
QL05p004486 Quercus lobata HOM05D005441 ORTHO05D006879 3.0e-12 75.5 70 51.4
ECA238G2248 Erigeron canadensis HOM05D005441 ORTHO05D006879 5.1e-12 74.7 62 51.6
ATR0721G128 Amborella trichopoda HOM05D005441 ORTHO05D006879 1.5e-11 73.2 62 50.0
SGA_v2.0_scaffold105G30361 Striga asiatica HOM05D005441 ORTHO05D006879 1.7e-10 69.7 59 54.2
AUR62024526 Chenopodium quinoa HOM05D005441 ORTHO05D006879 2.2e-10 69.3 70 48.6
FvH4_5g05871 Fragaria vesca HOM05D002480 ORTHO05D003145 2.8e-10 68.9 53 69.8
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 3.7e-10 68.6 78 43.6
AUR62026118 Chenopodium quinoa HOM05D005441 ORTHO05D006879 3.7e-10 68.6 81 44.4
Zm00001eb141530 Zea mays HOM05D005441 ORTHO05D006879 6.3e-10 67.8 41 65.9
SMO147G0304 Selaginella moellendorffii HOM05D005441 ORTHO05D006879 6.9e-09 64.3 69 42.0
FvH4_4g09962 Fragaria vesca HOM05D002480 ORTHO05D003145 2.0e-08 62.8 52 65.4
FAN18G1129 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.0e-08 62.8 53 66.0
FAN26G2394 Fragaria x ananassa HOM05D002480 ORTHO05D003145 2.9e-07 58.9 53 56.6
FAN21G3182 Fragaria x ananassa HOM05D002480 ORTHO05D003145 5.0e-07 58.2 53 56.6


User provided reference genes

Program Settings