Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2991 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.5e-234 816.6 732 100.0
FAN14G3263 Fragaria x ananassa HOM05D007057 ORTHO05D008878 2.5e-229 799.3 732 99.0
FvH4_6g00680 Fragaria vesca HOM05D007057 ORTHO05D008878 2.8e-220 769.2 732 95.8
FAN05G1805 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.0e-214 750.7 732 93.6
FAN02G0321 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.1e-213 747.3 732 93.0
RcHm_v2.0_Chr3g0448121 Rosa chinensis HOM05D007057 ORTHO05D008878 2.5e-160 570.1 732 83.1
QL01p045590 Quercus lobata HOM05D007057 ORTHO05D008878 4.7e-111 406.4 729 68.2
Cfa006273 Carpinus fangiana HOM05D007057 ORTHO05D008878 8.4e-108 395.6 732 65.4
FAN27G3162 Fragaria x ananassa HOM05D007057 ORTHO05D008878 2.1e-103 380.9 224 93.8
Haze_04538 Corylus avellana HOM05D007057 ORTHO05D008878 4.4e-101 373.2 732 64.2
Prupe.6G359800 Prunus persica HOM05D007057 ORTHO05D008878 6.4e-100 369.4 642 68.7
CsaV3_1G044640 Cucumis sativus L. HOM05D007057 ORTHO05D008878 6.0e-98 362.8 731 65.4
FAN28G1564 Fragaria x ananassa HOM05D007057 ORTHO05D008878 6.0e-98 362.8 212 93.9
CANSAT54G2802 Cannabis sativa HOM05D007057 ORTHO05D008878 1.3e-97 361.7 723 67.1
MELO3C010073.2 Cucumis melo HOM05D007057 ORTHO05D008878 1.9e-96 357.8 731 64.8
Duzib128G1528 Durio zibethinus HOM05D007057 ORTHO05D008878 1.6e-95 354.8 730 66.3
Lj1g0009704 Lotus japonicus HOM05D007057 ORTHO05D008878 2.8e-95 354.0 711 63.7
Manes.08G104600 Manihot esculenta HOM05D007057 ORTHO05D008878 3.6e-95 353.6 728 67.3
ClCG03G010890 Citrullus lanatus HOM05D007057 ORTHO05D008878 8.1e-95 352.4 731 60.7
Duzib177G0705 Durio zibethinus HOM05D007057 ORTHO05D008878 1.7e-92 344.7 731 65.0
Eucgr.H01380 Eucalyptus grandis HOM05D007057 ORTHO05D008878 5.4e-91 339.7 710 68.0
Potri.013G087200 Populus trichocarpa HOM05D007057 ORTHO05D008878 5.4e-91 339.7 720 66.0
Glyma.18G240800 Glycine max HOM05D007057 ORTHO05D008878 2.1e-90 337.8 711 66.2
GSVIVG01019130001 Vitis vinifera HOM05D007057 ORTHO05D008878 2.5e-88 330.9 702 67.1
Thecc.05G201600 Theobroma cacao HOM05D007057 ORTHO05D008878 4.8e-87 326.6 731 65.1
Glyma.09G251800 Glycine max HOM05D007057 ORTHO05D008878 6.9e-86 322.8 711 65.8
Gohir.D04G026500 Gossypium hirsutum HOM05D007057 ORTHO05D008878 1.3e-84 318.5 716 67.7
Gohir.A05G390700 Gossypium hirsutum HOM05D007057 ORTHO05D008878 8.4e-84 315.8 716 67.7
Sed0005007 Sechium edule HOM05D007057 ORTHO05D008878 2.1e-82 311.2 732 62.7
VMungo1383G0494 Vigna mungo HOM05D007057 ORTHO05D008878 7.4e-80 302.8 712 63.5
Atru.chr10.1100 Acer truncatum HOM05D007057 ORTHO05D008878 1.3e-79 302.0 717 68.1
Dinv04346 Davidia involucrata HOM05D007057 ORTHO05D008878 2.8e-79 300.8 733 64.7
Cpa.g.sc123.6 Carica papaya HOM05D007057 ORTHO05D008878 3.7e-79 300.4 719 65.9
Ca_07967_v3 Cicer arietinum L. HOM05D007057 ORTHO05D008878 3.4e-77 293.9 711 64.3
AUR62000330 Chenopodium quinoa HOM05D007057 ORTHO05D008878 2.9e-76 290.8 710 66.5
Lalb_Chr19g0126731 Lupinus albus HOM05D007057 ORTHO05D008878 8.4e-76 289.3 714 63.3
Gorai.012G029100 Gossypium raimondii HOM05D007057 ORTHO05D008878 9.3e-75 285.8 719 65.9
Medtr7g079550 Medicago truncatula HOM05D007057 ORTHO05D008878 2.7e-74 284.3 712 64.6
PGR031G0541 Punica granatum HOM05D007057 ORTHO05D008878 4.6e-74 283.5 731 61.3
TPR.G28458 Trifolium pratense HOM05D007057 ORTHO05D008878 3.0e-73 280.8 711 63.3
Lalb_Chr03g0038391 Lupinus albus HOM05D007057 ORTHO05D008878 3.9e-73 280.4 714 63.2
TWI18G1405 Tripterygium wilfordii HOM05D007057 ORTHO05D008878 1.9e-72 278.1 709 55.7
Ah.04g158850 Amaranthus hybridus HOM05D007057 ORTHO05D008878 2.8e-71 274.2 712 66.2
TAR362G1011 Trochodendron aralioides HOM05D007057 ORTHO05D008878 1.8e-70 271.6 721 63.5
AUR62006672 Chenopodium quinoa HOM05D007057 ORTHO05D008878 1.3e-68 265.4 710 63.1
CiPaw.07G078900 Carya illinoinensis HOM05D007057 ORTHO05D008878 2.5e-64 251.1 607 66.2
Aa31LG2G2430 Aethionema arabicum HOM05D007057 ORTHO05D008878 1.8e-62 245.0 700 62.4
THA.LOC104823816 Tarenaya hassleriana HOM05D007057 ORTHO05D008878 2.4e-62 244.6 698 62.8
Psat3g104800 Pisum sativum HOM05D007057 ORTHO05D008878 2.1e-58 231.5 713 60.7
TWI75G1373 Tripterygium wilfordii HOM05D007057 ORTHO05D008878 9.7e-56 222.6 732 57.8
Actinidia34764 Actinidia chinensis HOM05D007057 ORTHO05D008878 4.8e-55 220.3 672 61.6
EL10Ac4g09982 Beta vulgaris HOM05D007057 ORTHO05D008878 2.6e-53 214.5 714 61.5
vmacro06001 Vaccinium macrocarpon HOM05D007057 ORTHO05D008878 1.0e-52 212.6 699 56.4
AT1G65380 Arabidopsis thaliana HOM05D007057 ORTHO05D008878 2.9e-52 211.1 697 63.4
Rhsim03G0265600 Rhododendron simsii HOM05D007057 ORTHO05D008878 2.5e-51 208.0 727 57.8
AL2G22040 Arabidopsis lyrata HOM05D007057 ORTHO05D008878 2.7e-50 204.5 698 60.7
CARHR057050 Cardamine hirsuta HOM05D007057 ORTHO05D008878 4.7e-50 203.8 699 60.5
Sc16g0010320 Simmondsia chinensis HOM05D007057 ORTHO05D008878 2.3e-49 201.4 720 58.5
Peaxi162Scf00976g00023 Petunia axillaris HOM05D007057 ORTHO05D008878 1.5e-48 198.7 697 59.0
Nn4g26683 Nelumbo nucifera HOM05D007057 ORTHO05D008878 2.6e-48 198.0 714 63.0
Peaxi162Scf00006g00421 Petunia axillaris HOM05D007057 ORTHO05D008878 4.4e-48 197.2 697 58.2
Carub.0002s1110 Capsella rubella HOM05D007057 ORTHO05D008878 1.3e-47 195.7 697 62.4
C02p21340 Brassica napus HOM05D007057 ORTHO05D008878 1.7e-47 195.3 699 61.9
Nitab4.5_0000946g0060 Nicotiana tabacum HOM05D007057 ORTHO05D008878 3.7e-47 194.1 700 60.9
Phvul.008G055400 Phaseolus vulgaris HOM05D007057 ORTHO05D008878 4.8e-47 193.7 355 57.5
Nitab4.5_0001857g0020 Nicotiana tabacum HOM05D007057 ORTHO05D008878 1.2e-45 189.1 700 59.6
Ciclev10013603m.g Citrus clementina HOM05D007057 ORTHO05D008878 2.0e-45 188.3 228 54.4
Thhalv10018195m.g Eutrema salsugineum HOM05D007057 ORTHO05D008878 2.7e-45 188.0 699 60.8
Aqoxy2G03299 Aquilegia oxysepala HOM05D007057 ORTHO05D008878 4.5e-45 187.2 714 58.7
DCAR_001923 Daucus carota HOM05D007057 ORTHO05D008878 1.7e-44 185.3 694 53.5
HPP92_021394 Vanilla planifolia HOM05D007057 ORTHO05D008878 2.2e-44 184.9 697 55.2
CAN.G217.2 Capsicum annuum HOM05D007057 ORTHO05D008878 5.0e-44 183.7 702 56.7
CSS0046667 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 1.9e-43 181.8 228 52.2
Cc09_g03450 Coffea canephora HOM05D007057 ORTHO05D008878 4.2e-43 180.6 697 57.1
BcaB05g24110 Brassica carinata HOM05D007057 ORTHO05D008878 6.1e-42 176.8 695 63.3
PSO675G4505 Papaver somniferum HOM05D007057 ORTHO05D008878 6.1e-42 176.8 717 56.3
Sp5g20120 Schrenkiella parvula HOM05D007057 ORTHO05D008878 4.0e-41 174.1 699 61.1
BcaC03g14695 Brassica carinata HOM05D007057 ORTHO05D008878 5.7e-40 170.2 699 61.9
BolC2t08271H Brassica oleracea HOM05D007057 ORTHO05D008878 5.7e-40 170.2 699 61.9
BraA02t06374Z Brassica rapa HOM05D007057 ORTHO05D008878 5.7e-40 170.2 699 62.5
HanXRQChr01g0025821 Helianthus annuus HOM05D007057 ORTHO05D008878 5.7e-40 170.2 708 58.1
Oeu010152.2 Olea europaea HOM05D007057 ORTHO05D008878 5.7e-40 170.2 716 55.0
Sopen04g025560 Solanum pennellii HOM05D007057 ORTHO05D008878 2.2e-39 168.3 704 57.4
Solyc04g056640.1 Solanum lycopersicum HOM05D007057 ORTHO05D008878 6.3e-39 166.8 704 57.4
A02p13180 Brassica napus HOM05D007057 ORTHO05D008878 8.3e-39 166.4 699 61.7
MSTRG.8219 Avicennia marina HOM05D007057 ORTHO05D008878 2.0e-37 161.8 706 52.7
Migut.L01029 Erythranthe guttata HOM05D007057 ORTHO05D008878 3.5e-37 161.0 737 51.7
Lsat_1_v5_gn_1_58361 Lactuca sativa HOM05D007057 ORTHO05D008878 5.9e-37 160.2 709 59.8
PSO017G0140 Papaver somniferum HOM05D007057 ORTHO05D008878 6.5e-36 156.8 716 57.1
MBI08_g39972_MAGBIO Magnolia biondii HOM05D007057 ORTHO05D008878 9.4e-35 152.9 710 56.8
ECA248G3256 Erigeron canadensis HOM05D007057 ORTHO05D008878 1.2e-34 152.5 696 57.5
CSS0040779 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 1.4e-33 149.1 550 58.9
PGSC0003DMG400010523 Solanum tuberosum HOM05D007057 ORTHO05D008878 3.4e-32 144.4 227 48.0
FAN26G2527 Fragaria x ananassa HOM05D007057 ORTHO05D008878 7.5e-32 143.3 76 93.4
COL.COLO4_27405 Corchorus olitorius HOM05D007057 ORTHO05D008878 4.9e-31 140.6 163 55.2
CSS0018282 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 2.9e-28 131.3 205 47.3
CSS0040898 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 2.9e-28 131.3 205 47.3
SGA_v2.0_scaffold71G23872 Striga asiatica HOM05D007057 ORTHO05D008878 3.6e-26 124.4 693 53.5
AUR62000327 Chenopodium quinoa HOM05D007057 ORTHO05D008878 6.1e-26 123.6 425 55.8
SalBow6G0986 Salvia bowleyana HOM05D007057 ORTHO05D008878 6.8e-17 93.6 224 33.9
BcaC03g14701 Brassica carinata HOM05D007057 ORTHO05D008878 5.4e-14 84.0 106 50.0
BcaC03g14699 Brassica carinata HOM05D007057 ORTHO05D008878 7.8e-13 80.1 102 52.0
ATR0824G263 Amborella trichopoda HOM05D007057 ORTHO05D008878 1.9e-11 75.5 255 38.8
BcaB05g24109 Brassica carinata HOM05D007057 ORTHO05D008878 7.3e-11 73.6 106 53.8
BcaC03g14697 Brassica carinata HOM05D007057 ORTHO05D008878 8.9e-09 66.6 157 56.1
arahy.Tifrunner.gnm1.ann1.QA0C1I Arachis hypogaea HOM05D000071 ORTHO05D000029 2.6e-08 65.1 93 38.7
Zm00001eb167820 Zea mays HOM05D000029 ORTHO05D006810 4.4e-08 64.3 212 41.5
Cpa.g.sc701.4 Carica papaya HOM05D000071 ORTHO05D000029 9.8e-08 63.2 228 26.8
Os02g0603100 Oryza sativa ssp. japonica HOM05D007057 ORTHO05D008878 2.2e-07 62.0 187 36.4
Ah.05g178660 Amaranthus hybridus HOM05D000029 ORTHO05D006810 2.9e-07 61.6 194 46.9
Os08g0541300 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 2.9e-07 61.6 80 37.5
Dinv25665 Davidia involucrata HOM05D000071 ORTHO05D000029 3.7e-07 61.2 204 29.4
Actinidia33174 Actinidia chinensis HOM05D000071 ORTHO05D000029 4.9e-07 60.8 206 23.8
SEGI_35217 Sequoiadendron giganteum HOM05D000071 ORTHO05D000029 4.9e-07 60.8 79 41.8
CsaV3_3G032000 Cucumis sativus L. HOM05D000071 ORTHO05D000029 8.3e-07 60.1 105 37.1
MBI18_g13982_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 8.3e-07 60.1 215 28.8
MBI18_g41183_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 8.3e-07 60.1 209 27.8
Os11g0232100 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D006810 8.3e-07 60.1 205 41.5
Sed0012359 Sechium edule HOM05D000071 ORTHO05D000029 1.4e-06 59.3 106 37.7
MELO3C023993.2 Cucumis melo HOM05D000071 ORTHO05D000029 1.9e-06 58.9 108 36.1
Dinv25664 Davidia involucrata HOM05D000071 ORTHO05D000029 2.4e-06 58.5 201 28.9
Manes.10G136600 Manihot esculenta HOM05D000071 ORTHO05D000029 2.4e-06 58.5 79 40.5
Mapoly0056s0145 Marchantia polymorpha HOM05D000054 ORTHO05D011578 2.4e-06 58.5 79 45.6
SalBow2G0568 Salvia bowleyana HOM05D000029 ORTHO05D002500 2.4e-06 58.5 81 42.0
PGSC0003DMG400022988 Solanum tuberosum HOM05D000071 ORTHO05D000029 2.4e-06 58.5 194 28.4
Zm00001eb184050 Zea mays HOM05D007057 ORTHO05D008878 2.4e-06 58.5 230 34.3
AUR62023560 Chenopodium quinoa HOM05D000029 ORTHO05D006810 3.2e-06 58.2 195 28.2
COL.COLO4_17551 Corchorus olitorius HOM05D000053 ORTHO05D000035 3.2e-06 58.2 81 44.4
Dinv44208 Davidia involucrata HOM05D001042 ORTHO05D007836 3.2e-06 58.2 212 27.4
Lsat_1_v5_gn_5_121160 Lactuca sativa HOM05D000029 ORTHO05D002162 3.2e-06 58.2 92 37.0
Manes.07G042900 Manihot esculenta HOM05D000071 ORTHO05D000029 3.2e-06 58.2 123 30.9
arahy.Tifrunner.gnm1.ann1.X4T9A0 Arachis hypogaea HOM05D000053 ORTHO05D000448 4.1e-06 57.8 88 36.4
CANSAT64G2047 Cannabis sativa HOM05D000071 ORTHO05D000029 4.1e-06 57.8 233 27.5
RcHm_v2.0_Chr5g0022701 Rosa chinensis HOM05D000071 ORTHO05D000029 4.1e-06 57.8 216 28.2
arahy.Tifrunner.gnm1.ann1.SDR89X Arachis hypogaea HOM05D000071 ORTHO05D000029 5.4e-06 57.4 93 36.6
CANSAT11G2530 Cannabis sativa HOM05D000029 ORTHO05D002500 5.4e-06 57.4 81 39.5
Hma1.2p1_1078F.1_g254820 Hydrangea macrophylla HOM05D000029 ORTHO05D002500 5.4e-06 57.4 81 39.5
Manes.07G061900 Manihot esculenta HOM05D000071 ORTHO05D000029 5.4e-06 57.4 101 35.6
Prupe.4G145700 Prunus persica HOM05D000029 ORTHO05D002162 5.4e-06 57.4 99 32.3
Duzib168G0957 Durio zibethinus HOM05D000033 ORTHO05D004067 7.1e-06 57.0 208 27.9
FAN16G1818 Fragaria x ananassa HOM05D000029 ORTHO05D002162 7.1e-06 57.0 102 33.3
Gohir.D12G145400 Gossypium hirsutum HOM05D000071 ORTHO05D000029 7.1e-06 57.0 106 35.8
Gorai.008G156800 Gossypium raimondii HOM05D000071 ORTHO05D000029 7.1e-06 57.0 106 35.8
Lj5A639T15 Lonicera japonica HOM05D000053 ORTHO05D000448 7.1e-06 57.0 161 31.1
QL04p009601 Quercus lobata HOM05D000071 ORTHO05D000029 7.1e-06 57.0 123 32.5
Zm00001eb413670 Zea mays HOM05D000054 ORTHO05D000286 7.1e-06 57.0 73 46.6
Duzib132G1037 Durio zibethinus HOM05D000029 ORTHO05D002500 9.2e-06 56.6 63 47.6
FvH4_4g32560 Fragaria vesca HOM05D000071 ORTHO05D000029 9.2e-06 56.6 219 26.9
Os05g0257100 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D010039 9.2e-06 56.6 66 45.5
TWI09G0221 Tripterygium wilfordii HOM05D000071 ORTHO05D000029 9.2e-06 56.6 124 32.3


User provided reference genes

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