Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2972 Fragaria x ananassa HOM05D001596 ORTHO05D007454 3.8e-151 538.1 264 100.0
FAN02G3139 Fragaria x ananassa HOM05D001596 ORTHO05D007454 9.3e-134 480.3 385 67.8
FAN05G3728 Fragaria x ananassa HOM05D001596 ORTHO05D007454 1.2e-133 479.9 385 67.8
FAN14G3752 Fragaria x ananassa HOM05D001596 ORTHO05D007454 2.3e-132 475.7 385 67.5
FvH4_6g47530 Fragaria vesca HOM05D001596 ORTHO05D007454 6.7e-132 474.2 385 67.3
FAN09G3451 Fragaria x ananassa HOM05D001596 ORTHO05D007454 6.7e-132 474.2 264 90.2
RcHm_v2.0_Chr2g0166601 Rosa chinensis HOM05D001596 ORTHO05D007454 5.1e-116 421.4 397 59.7
RcHm_v2.0_Chr6g0268991 Rosa chinensis HOM05D001596 ORTHO05D007454 6.3e-114 414.5 385 60.8
MD17G1056300 Malus domestica HOM05D001596 ORTHO05D007454 2.9e-103 379.0 385 55.8
Prupe.3G259200 Prunus persica HOM05D001596 ORTHO05D007454 6.1e-101 371.3 374 55.3
MD09G1060900 Malus domestica HOM05D001596 ORTHO05D007454 1.0e-100 370.5 385 55.6
VMungo1383G1350 Vigna mungo HOM05D001596 ORTHO05D007454 8.0e-93 344.4 387 49.6
CiPaw.03G091700 Carya illinoinensis HOM05D001596 ORTHO05D007454 3.0e-92 342.4 385 49.4
Phvul.008G036300 Phaseolus vulgaris HOM05D001596 ORTHO05D007454 4.0e-92 342.0 387 49.4
Dinv33807 Davidia involucrata HOM05D001596 ORTHO05D007454 5.2e-92 341.7 388 49.2
Manes.02G050801 Manihot esculenta HOM05D001596 ORTHO05D007454 9.8e-91 337.4 388 49.2
Lalb_Chr17g0337091 Lupinus albus HOM05D001596 ORTHO05D007454 1.3e-90 337.0 388 49.0
QL02p039390 Quercus lobata HOM05D001596 ORTHO05D007454 8.3e-90 334.3 385 49.6
ClCG10G015410 Citrullus lanatus HOM05D001596 ORTHO05D007454 1.8e-89 333.2 385 48.8
QL02p039646 Quercus lobata HOM05D001596 ORTHO05D007454 3.1e-89 332.4 385 49.4
MELO3C009840.2 Cucumis melo HOM05D001596 ORTHO05D007454 4.1e-89 332.0 392 48.5
CsaV3_3G041100 Cucumis sativus L. HOM05D001596 ORTHO05D007454 1.2e-88 330.5 385 48.6
Psat3g198440 Pisum sativum HOM05D001596 ORTHO05D007454 1.3e-87 327.0 385 48.1
Cpa.g.sc14.140 Carica papaya HOM05D001596 ORTHO05D007454 3.8e-87 325.5 393 47.3
TPR.G33449 Trifolium pratense HOM05D001596 ORTHO05D007454 5.0e-87 325.1 385 48.8
Cfa007621 Carpinus fangiana HOM05D001596 ORTHO05D007454 1.1e-86 323.9 372 49.2
Medtr7g012250 Medicago truncatula HOM05D001596 ORTHO05D007454 1.5e-86 323.6 387 48.6
arahy.Tifrunner.gnm1.ann1.PFF9RU Arachis hypogaea HOM05D001596 ORTHO05D007454 1.9e-86 323.2 381 47.5
arahy.Tifrunner.gnm1.ann1.RG9N1V Arachis hypogaea HOM05D001596 ORTHO05D007454 1.9e-86 323.2 381 47.5
PGR083G0116 Punica granatum HOM05D001596 ORTHO05D007454 5.5e-86 321.6 387 47.5
Lj1g0022114 Lotus japonicus HOM05D001596 ORTHO05D007454 1.6e-85 320.1 385 48.1
TWI32G0402 Tripterygium wilfordii HOM05D001596 ORTHO05D007454 3.6e-85 318.9 388 47.4
Glyma.08G241500 Glycine max HOM05D001596 ORTHO05D007454 8.0e-85 317.8 387 46.3
TAR374G0779 Trochodendron aralioides HOM05D001596 ORTHO05D007454 8.0e-85 317.8 368 49.2
TWI60G0862 Tripterygium wilfordii HOM05D001596 ORTHO05D007454 1.0e-84 317.4 388 48.2
Nn4g23337 Nelumbo nucifera HOM05D001596 ORTHO05D007454 1.4e-84 317.0 373 48.5
Aqoxy3G00463 Aquilegia oxysepala HOM05D001596 ORTHO05D007454 3.0e-84 315.8 359 48.5
Potri.017G089700 Populus trichocarpa HOM05D001596 ORTHO05D007454 6.8e-84 314.7 396 46.7
CANSAT64G0989 Cannabis sativa HOM05D001596 ORTHO05D007454 2.0e-83 313.2 399 47.4
Gorai.007G081000 Gossypium raimondii HOM05D001596 ORTHO05D007454 3.4e-83 312.4 385 47.3
Sed0001933 Sechium edule HOM05D001596 ORTHO05D007454 4.4e-83 312.0 385 45.5
PSO478G2046 Papaver somniferum HOM05D001596 ORTHO05D007454 5.7e-83 311.6 375 47.2
Thecc.04G090400 Theobroma cacao HOM05D001596 ORTHO05D007454 5.7e-83 311.6 374 47.6
Ciclev10011769m.g Citrus clementina HOM05D001596 ORTHO05D007454 7.5e-83 311.2 358 47.8
Duzib264G1014 Durio zibethinus HOM05D001596 ORTHO05D007454 9.8e-83 310.8 387 46.8
Gohir.A11G071400 Gossypium hirsutum HOM05D001596 ORTHO05D007454 9.8e-83 310.8 385 47.0
PGSC0003DMG400023092 Solanum tuberosum HOM05D001596 ORTHO05D007454 9.8e-83 310.8 382 46.6
Duzib147G0136 Durio zibethinus HOM05D001596 ORTHO05D007454 1.7e-82 310.1 387 46.5
Lju41A7T38 Lonicera japonica HOM05D001596 ORTHO05D007454 1.7e-82 310.1 412 44.4
Eucgr.J01367 Eucalyptus grandis HOM05D001596 ORTHO05D007454 1.1e-81 307.4 390 45.9
Sopen03g012490 Solanum pennellii HOM05D001596 ORTHO05D007454 4.1e-81 305.4 355 48.2
Hma1.2p1_1813F.1_g303840 Hydrangea macrophylla HOM05D001596 ORTHO05D007454 7.0e-81 304.7 363 48.5
Solyc03g013310.3 Solanum lycopersicum HOM05D001596 ORTHO05D007454 7.0e-81 304.7 355 47.9
HPP92_007741 Vanilla planifolia HOM05D001596 ORTHO05D007454 7.0e-81 304.7 385 43.4
Haze_14474 Corylus avellana HOM05D001596 ORTHO05D007454 1.2e-80 303.9 438 42.5
Sc04g0005110 Simmondsia chinensis HOM05D001596 ORTHO05D007454 1.6e-80 303.5 385 46.5
Cc07_g03840 Coffea canephora HOM05D001596 ORTHO05D007454 3.5e-80 302.4 385 45.5
Migut.H00656 Erythranthe guttata HOM05D001596 ORTHO05D007454 5.9e-80 301.6 363 46.6
SEGI_18695 Sequoiadendron giganteum HOM05D001596 ORTHO05D007454 1.1e-78 297.4 361 45.2
ATR0111G021 Amborella trichopoda HOM05D001596 ORTHO05D007454 3.3e-78 295.8 383 44.6
Rhsim08G0073300 Rhododendron simsii HOM05D001596 ORTHO05D007454 2.8e-77 292.7 422 41.7
CARHR262960 Cardamine hirsuta HOM05D001596 ORTHO05D007454 3.6e-77 292.4 384 43.0
Atru.chr8.373 Acer truncatum HOM05D001596 ORTHO05D007454 1.8e-76 290.0 337 49.0
A04p12090 Brassica napus HOM05D001596 ORTHO05D007454 1.8e-76 290.0 388 43.6
BraA04t16874Z Brassica rapa HOM05D001596 ORTHO05D007454 2.3e-76 289.7 388 44.3
BcaB06g27323 Brassica carinata HOM05D001596 ORTHO05D007454 4.0e-76 288.9 388 43.8
AL7G50930 Arabidopsis lyrata HOM05D001596 ORTHO05D007454 5.2e-76 288.5 384 43.0
vmacro18163 Vaccinium macrocarpon HOM05D001596 ORTHO05D007454 6.8e-76 288.1 419 42.5
Carub.0007s3654 Capsella rubella HOM05D001596 ORTHO05D007454 1.5e-75 287.0 384 42.2
AT5G39400 Arabidopsis thaliana HOM05D001596 ORTHO05D007454 4.4e-75 285.4 384 42.4
Thhalv10027783m.g Eutrema salsugineum HOM05D001596 ORTHO05D007454 5.7e-75 285.0 388 43.3
C04p45720 Brassica napus HOM05D001596 ORTHO05D007454 7.5e-75 284.6 388 43.0
Sp7g02580 Schrenkiella parvula HOM05D001596 ORTHO05D007454 6.4e-74 281.6 361 43.2
BcaB06g27297 Brassica carinata HOM05D001596 ORTHO05D007454 3.2e-73 279.3 388 42.5
BolC4t26157H Brassica oleracea HOM05D001596 ORTHO05D007454 3.2e-73 279.3 388 42.5
SalBow1G0648 Salvia bowleyana HOM05D001596 ORTHO05D007454 3.2e-73 279.3 363 44.1
BcaB02g07985 Brassica carinata HOM05D001596 ORTHO05D007454 7.0e-73 278.1 390 41.8
Aa31LG9G16590 Aethionema arabicum HOM05D001596 ORTHO05D007454 9.2e-73 277.7 355 43.1
PSO017G0157 Papaver somniferum HOM05D001596 ORTHO05D007454 9.2e-73 277.7 337 46.3
BraA07t29696Z Brassica rapa HOM05D001596 ORTHO05D007454 2.7e-72 276.2 390 41.8
A07p19970 Brassica napus HOM05D001596 ORTHO05D007454 3.5e-72 275.8 390 41.8
BcaC08g44416 Brassica carinata HOM05D001596 ORTHO05D007454 5.9e-72 275.0 390 41.5
C06p18530 Brassica napus HOM05D001596 ORTHO05D007454 5.9e-72 275.0 390 41.5
BolC6t37066H Brassica oleracea HOM05D001596 ORTHO05D007454 5.9e-72 275.0 390 41.5
Oeu062142.1 Olea europaea HOM05D001596 ORTHO05D007454 7.3e-70 268.1 337 45.1
THA.LOC104805493 Tarenaya hassleriana HOM05D001596 ORTHO05D007454 6.2e-69 265.0 386 40.7
Nitab4.5_0005196g0030 Nicotiana tabacum HOM05D001596 ORTHO05D007454 5.2e-68 261.9 386 42.0
SGA_v2.0_scaffold413G51159 Striga asiatica HOM05D001596 ORTHO05D007454 1.4e-65 253.8 300 47.0
SEGI_14678 Sequoiadendron giganteum HOM05D001596 ORTHO05D007454 1.6e-64 250.4 360 40.0
Nitab4.5_0001637g0100 Nicotiana tabacum HOM05D001596 ORTHO05D007454 1.1e-62 244.2 383 41.5
SMO118G0408 Selaginella moellendorffii HOM05D001596 ORTHO05D007454 3.3e-62 242.7 360 39.4
COL.COLO4_07429 Corchorus olitorius HOM05D001596 ORTHO05D007454 1.7e-58 230.3 327 42.2
CSS0015839 Camellia sinensis var. sinensis HOM05D001596 ORTHO05D007454 2.1e-56 223.4 230 52.2
Gohir.D11G075400 Gossypium hirsutum HOM05D001596 ORTHO05D007454 1.9e-54 216.9 227 52.4
Lsat_1_v5_gn_3_98880 Lactuca sativa HOM05D001596 ORTHO05D007454 2.1e-53 213.4 371 36.9
SGA_v2.0_scaffold413G51158 Striga asiatica HOM05D001596 ORTHO05D007454 1.1e-52 211.1 339 41.0
RcHm_v2.0_Chr5g0056761 Rosa chinensis HOM05D001596 ORTHO05D007454 1.4e-52 210.7 197 59.9
HanXRQChr15g0473081 Helianthus annuus HOM05D001596 ORTHO05D007454 1.5e-51 207.2 344 40.7
Peaxi162Scf00451g00420 Petunia axillaris HOM05D001596 ORTHO05D007454 9.9e-51 204.5 144 73.6
CBR_g29865 Chara braunii HOM05D001596 ORTHO05D007454 3.5e-48 196.1 356 35.4
ECA246G1680 Erigeron canadensis HOM05D001596 ORTHO05D007454 1.0e-47 194.5 357 36.1
Mapoly0058s0093 Marchantia polymorpha HOM05D001596 ORTHO05D007454 1.0e-47 194.5 318 36.5
Lalb_Chr04g0258561 Lupinus albus HOM05D001596 ORTHO05D007454 3.3e-46 189.5 126 67.5
Actinidia17573 Actinidia chinensis HOM05D001596 ORTHO05D007454 1.2e-43 181.0 191 53.9
CiPaw.04G058900 Carya illinoinensis HOM05D001596 ORTHO05D007454 2.6e-43 179.9 284 41.9
GSVIVG01011485001 Vitis vinifera HOM05D001596 ORTHO05D007454 4.4e-43 179.1 126 68.3
Lalb_Chr04g0258551 Lupinus albus HOM05D001596 ORTHO05D007454 5.8e-43 178.7 202 51.0
Ca_06803_v3 Cicer arietinum L. HOM05D001596 ORTHO05D007454 3.2e-41 172.9 274 39.4
GSVIVG01011486001 Vitis vinifera HOM05D001596 ORTHO05D007454 9.6e-38 161.4 189 50.3
DCAR_005555 Daucus carota HOM05D001596 ORTHO05D007454 1.3e-37 161.0 128 57.0
RcHm_v2.0_Chr5g0056771 Rosa chinensis HOM05D001596 ORTHO05D007454 1.8e-36 157.1 91 85.7
FAN09G0681 Fragaria x ananassa HOM05D001596 ORTHO05D007454 4.9e-34 149.1 71 100.0
Lsat_1_v5_gn_3_98761 Lactuca sativa HOM05D001596 ORTHO05D007454 1.1e-33 147.9 327 33.6
Lsat_1_v5_gn_3_98721 Lactuca sativa HOM05D001596 ORTHO05D007454 4.2e-33 146.0 315 33.7
Lsat_1_v5_gn_7_89141 Lactuca sativa HOM05D001596 ORTHO05D007454 8.1e-29 131.7 301 32.6
DCAR_005554 Daucus carota HOM05D001596 ORTHO05D007454 8.4e-26 121.7 99 61.6
arahy.Tifrunner.gnm1.ann1.854N7M Arachis hypogaea HOM05D001596 ORTHO05D007454 3.0e-23 113.2 154 43.5
unitig_62.g23435 Utricularia gibba HOM05D001596 ORTHO05D007454 1.5e-22 110.9 99 56.6
Lsat_1_v5_gn_3_98660 Lactuca sativa HOM05D001596 ORTHO05D007454 2.9e-18 96.7 228 30.7
Mapoly0117s0012 Marchantia polymorpha HOM05D001596 ORTHO05D007454 5.5e-17 92.4 305 28.5
AagrBONN_evm.TU.Sc2ySwM_228.4578 Anthoceros agrestis HOM05D001596 ORTHO05D007454 3.5e-16 89.7 289 28.7
PRCOL_00000060 Prasinoderma coloniale HOM05D001596 ORTHO05D007454 1.3e-10 71.2 178 29.8
Cre06.g308400 Chlamydomonas reinhardtii HOM05D001596 ORTHO05D007454 2.5e-09 67.0 197 29.4
unitig_62.g23436 Utricularia gibba HOM05D001596 ORTHO05D007454 1.0e-07 61.6 39 69.2
unitig_744.g24373 Utricularia gibba HOM05D001596 ORTHO05D002857 1.9e-06 57.4 278 24.1
Actinidia00422 Actinidia chinensis HOM05D001596 ORTHO05D002857 3.3e-06 56.6 320 21.6
AUR62010267 Chenopodium quinoa HOM05D001596 ORTHO05D002857 4.3e-06 56.2 169 25.4
AUR62013248 Chenopodium quinoa HOM05D001596 ORTHO05D002857 4.3e-06 56.2 169 25.4
AagrBONN_evm.TU.Sc2ySwM_228.2959 Anthoceros agrestis HOM05D001596 ORTHO05D007454 5.7e-06 55.8 55 47.3
BolC3t17333H Brassica oleracea HOM05D001596 ORTHO05D002857 7.4e-06 55.5 100 33.0
RcHm_v2.0_Chr2g0106491 Rosa chinensis HOM05D001596 ORTHO05D002857 7.4e-06 55.5 169 24.9
Prupe.6G230100 Prunus persica HOM05D001596 ORTHO05D002857 9.7e-06 55.1 169 24.9
TAR628G1421 Trochodendron aralioides HOM05D001596 ORTHO05D002857 9.7e-06 55.1 155 28.4


User provided reference genes

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