Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5278 Fragaria x ananassa HOM05D007303 ORTHO05D009231 2.6e-32 141.4 68 100.0
FAN09G2915 Fragaria x ananassa HOM05D007303 ORTHO05D009231 2.6e-32 141.4 68 100.0
FvH4_6g09420 Fragaria vesca HOM05D007303 ORTHO05D009231 5.9e-32 140.2 68 98.5
RcHm_v2.0_Chr3g0459881 Rosa chinensis HOM05D007303 ORTHO05D009231 1.0e-31 139.4 68 98.5
FAN14G3833 Fragaria x ananassa HOM05D007303 ORTHO05D009231 2.9e-31 137.9 68 97.1
Prupe.6G297800 Prunus persica HOM05D007303 ORTHO05D009231 9.4e-30 132.9 66 93.9
MD04G1177900 Malus domestica HOM05D007303 ORTHO05D009231 2.6e-27 124.8 60 95.0
MD12G1193500 Malus domestica HOM05D007303 ORTHO05D009231 2.6e-27 124.8 60 95.0
Hma1.2p1_0174F.1_g076630 Hydrangea macrophylla HOM05D007303 ORTHO05D009231 7.4e-27 123.2 67 86.6
Oeu026929.1 Olea europaea HOM05D007303 ORTHO05D009231 7.4e-27 123.2 68 83.8
Migut.L02050 Erythranthe guttata HOM05D007303 ORTHO05D009231 9.7e-27 122.9 68 80.9
Glyma.18G217700 Glycine max HOM05D007303 ORTHO05D009231 1.3e-26 122.5 61 93.4
Medtr8g005360 Medicago truncatula HOM05D007303 ORTHO05D009231 2.2e-26 121.7 68 86.8
Manes.09G121600 Manihot esculenta HOM05D007303 ORTHO05D009231 3.7e-26 120.9 64 85.9
CARHR082910 Cardamine hirsuta HOM05D007303 ORTHO05D009231 4.8e-26 120.6 65 81.5
CANSAT83G0001 Cannabis sativa HOM05D007303 ORTHO05D009231 6.3e-26 120.2 59 91.5
Glyma.09G271600 Glycine max HOM05D007303 ORTHO05D009231 8.2e-26 119.8 61 88.5
Nitab4.5_0001215g0100 Nicotiana tabacum HOM05D007303 ORTHO05D009231 8.2e-26 119.8 67 82.1
TWI74G1491 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 1.1e-25 119.4 61 88.5
Ca_23107_v3 Cicer arietinum L. HOM05D007303 ORTHO05D009231 1.4e-25 119.0 65 81.5
SalBow4G1964 Salvia bowleyana HOM05D007303 ORTHO05D009231 1.4e-25 119.0 71 80.3
SalBow4G2888 Salvia bowleyana HOM05D007303 ORTHO05D009231 1.4e-25 119.0 71 80.3
Sopen10g027350 Solanum pennellii HOM05D007303 ORTHO05D009231 1.4e-25 119.0 67 80.6
PGSC0003DMG400027701 Solanum tuberosum HOM05D007303 ORTHO05D009231 1.4e-25 119.0 67 80.6
CAN.G65.102 Capsicum annuum HOM05D007303 ORTHO05D009231 1.8e-25 118.6 67 77.6
Lj3g0023771 Lotus japonicus HOM05D007303 ORTHO05D009231 2.4e-25 118.2 68 80.9
AT3G08610 Arabidopsis thaliana HOM05D007303 ORTHO05D009231 3.1e-25 117.9 65 80.0
BraA03t12812Z Brassica rapa HOM05D007303 ORTHO05D009231 4.1e-25 117.5 65 80.0
Thhalv10021979m.g Eutrema salsugineum HOM05D007303 ORTHO05D009231 4.1e-25 117.5 65 80.0
AL3G19590 Arabidopsis lyrata HOM05D007303 ORTHO05D009231 5.3e-25 117.1 65 80.0
BraA01t04340Z Brassica rapa HOM05D007303 ORTHO05D009231 5.3e-25 117.1 65 80.0
COL.COLO4_05680 Corchorus olitorius HOM05D007303 ORTHO05D009231 5.3e-25 117.1 66 78.8
Phvul.008G079100 Phaseolus vulgaris HOM05D007303 ORTHO05D009231 5.3e-25 117.1 68 85.3
Cpa.g.sc0.70 Carica papaya HOM05D007303 ORTHO05D009231 9.1e-25 116.3 65 80.0
Psat6g005160 Pisum sativum HOM05D007303 ORTHO05D009231 9.1e-25 116.3 61 85.2
C05p59250 Brassica napus HOM05D007303 ORTHO05D009231 1.2e-24 115.9 65 78.5
BolC5t34572H Brassica oleracea HOM05D007303 ORTHO05D009231 1.2e-24 115.9 65 78.5
Cfa017000 Carpinus fangiana HOM05D007303 ORTHO05D009231 1.2e-24 115.9 59 89.8
PGR031G1377 Punica granatum HOM05D007303 ORTHO05D009231 1.2e-24 115.9 65 80.0
Hund19736 Selenicereus undatus HOM05D007303 ORTHO05D009231 1.2e-24 115.9 68 77.9
BcaB04g18583 Brassica carinata HOM05D007303 ORTHO05D009231 1.6e-24 115.5 65 78.5
BcaC05g29598 Brassica carinata HOM05D007303 ORTHO05D009231 1.6e-24 115.5 65 78.5
A05p40170 Brassica napus HOM05D007303 ORTHO05D009231 1.6e-24 115.5 65 78.5
MELO3C025258.2 Cucumis melo HOM05D007303 ORTHO05D009231 1.6e-24 115.5 62 83.9
CsaV3_4G027390 Cucumis sativus L. HOM05D007303 ORTHO05D009231 1.6e-24 115.5 62 83.9
Duzib151G0876 Durio zibethinus HOM05D007303 ORTHO05D009231 1.6e-24 115.5 66 78.8
BcaC09g47979 Brassica carinata HOM05D007303 ORTHO05D009231 2.0e-24 115.2 65 78.5
BolC1t05499H Brassica oleracea HOM05D007303 ORTHO05D009231 2.0e-24 115.2 65 78.5
Aa31LG5G11350 Aethionema arabicum HOM05D007303 ORTHO05D009231 2.6e-24 114.8 65 78.5
Carub.0003s0774 Capsella rubella HOM05D007303 ORTHO05D009231 2.6e-24 114.8 65 76.9
Haze_21228 Corylus avellana HOM05D007303 ORTHO05D009231 2.6e-24 114.8 59 89.8
Oeu007820.2 Olea europaea HOM05D007303 ORTHO05D009231 3.5e-24 114.4 68 73.5
arahy.Tifrunner.gnm1.ann1.RL3GXR Arachis hypogaea HOM05D007303 ORTHO05D009231 4.5e-24 114.0 65 81.5
arahy.Tifrunner.gnm1.ann1.ZQ7RI8 Arachis hypogaea HOM05D007303 ORTHO05D009231 4.5e-24 114.0 65 81.5
BcaB04g21249 Brassica carinata HOM05D007303 ORTHO05D009231 4.5e-24 114.0 66 77.3
BcaC01g04187 Brassica carinata HOM05D007303 ORTHO05D009231 5.9e-24 113.6 65 76.9
BolC3t16676H Brassica oleracea HOM05D007303 ORTHO05D009231 5.9e-24 113.6 65 76.9
CiPaw.10G166700 Carya illinoinensis HOM05D007303 ORTHO05D009231 5.9e-24 113.6 61 83.6
TWI53G0471 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 5.9e-24 113.6 61 83.6
ClCG04G006170 Citrullus lanatus HOM05D007303 ORTHO05D009231 7.7e-24 113.2 62 80.6
Eucgr.K01299 Eucalyptus grandis HOM05D007303 ORTHO05D009231 7.7e-24 113.2 67 79.1
Sed0004919 Sechium edule HOM05D007303 ORTHO05D009231 7.7e-24 113.2 66 77.3
TAR633G2342 Trochodendron aralioides HOM05D007303 ORTHO05D009231 7.7e-24 113.2 63 79.4
GSVIVG01010904001 Vitis vinifera HOM05D007303 ORTHO05D009231 1.0e-23 112.8 64 76.6
Cc06_g00200 Coffea canephora HOM05D007303 ORTHO05D009231 1.7e-23 112.1 63 81.0
Thecc.04G147800 Theobroma cacao HOM05D007303 ORTHO05D009231 1.7e-23 112.1 66 75.8
AUR62006451 Chenopodium quinoa HOM05D007303 ORTHO05D009231 5.0e-23 110.5 58 82.8
Gohir.A10G152200 Gossypium hirsutum HOM05D007303 ORTHO05D009231 6.5e-23 110.2 58 84.5
Gohir.A10G152700 Gossypium hirsutum HOM05D007303 ORTHO05D009231 6.5e-23 110.2 58 84.5
Gohir.D10G113500 Gossypium hirsutum HOM05D007303 ORTHO05D009231 6.5e-23 110.2 58 84.5
Gohir.D10G114000 Gossypium hirsutum HOM05D007303 ORTHO05D009231 6.5e-23 110.2 58 84.5
Gorai.011G125300 Gossypium raimondii HOM05D007303 ORTHO05D009231 6.5e-23 110.2 58 84.5
Gorai.011G125800 Gossypium raimondii HOM05D007303 ORTHO05D009231 6.5e-23 110.2 58 84.5
Ah.15g089810 Amaranthus hybridus HOM05D007303 ORTHO05D009231 8.5e-23 109.8 58 84.5
Oeu035181.1 Olea europaea HOM05D007303 ORTHO05D009231 8.5e-23 109.8 58 82.8
Lsat_1_v5_gn_8_109701 Lactuca sativa HOM05D007303 ORTHO05D009231 1.1e-22 109.4 62 74.2
Aa31LG5G18650 Aethionema arabicum HOM05D007303 ORTHO05D009231 2.5e-22 108.2 65 73.8
THA.LOC104816152 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 3.2e-22 107.8 61 75.4
Os05g0481600 Oryza sativa ssp. japonica HOM05D007303 ORTHO05D009231 4.2e-22 107.5 59 81.4
Duzib212G0558 Durio zibethinus HOM05D007303 ORTHO05D009231 5.5e-22 107.1 66 74.2
PSO384G4262 Papaver somniferum HOM05D007303 ORTHO05D009231 2.1e-21 105.1 59 76.3
Sc20g0007240 Simmondsia chinensis HOM05D007303 ORTHO05D009231 2.1e-21 105.1 58 81.0
Sp3g07060 Schrenkiella parvula HOM05D007303 ORTHO05D009231 4.7e-21 104.0 55 83.6
DCAR_023961 Daucus carota HOM05D007303 ORTHO05D009231 6.1e-21 103.6 54 85.2
ECA236G3381 Erigeron canadensis HOM05D007303 ORTHO05D009231 6.1e-21 103.6 61 73.8
THA.LOC104820511 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 6.1e-21 103.6 57 80.7
Potri.016G140900 Populus trichocarpa HOM05D007303 ORTHO05D009231 4.0e-20 100.9 57 77.2
SEGI_21984 Sequoiadendron giganteum HOM05D007303 ORTHO05D009231 9.7e-19 96.3 66 66.7
Oeu028466.1 Olea europaea HOM05D007303 ORTHO05D009231 2.8e-18 94.7 67 67.2
QL07p031324 Quercus lobata HOM05D007303 ORTHO05D009231 2.4e-17 91.7 64 64.1
CiPaw.01G273900 Carya illinoinensis HOM05D007303 ORTHO05D009231 7.7e-16 86.7 59 69.5
Cc09_g07100 Coffea canephora HOM05D007303 ORTHO05D009231 8.5e-15 83.2 67 61.2
Cc00_g04100 Coffea canephora HOM05D007303 ORTHO05D009231 4.2e-14 80.9 68 60.3
Manes.08G168000 Manihot esculenta HOM05D007303 ORTHO05D009231 1.2e-13 79.3 48 77.1
Sabra04G0157400 Salix brachista HOM05D007303 ORTHO05D009231 2.3e-12 75.1 43 76.7
MBI15_g31036_MAGBIO Magnolia biondii HOM05D007303 ORTHO05D009231 1.5e-11 72.4 40 77.5
Mapoly0148s0030 Marchantia polymorpha HOM05D007303 ORTHO05D009231 2.2e-10 68.6 55 54.5
A03p36440 Brassica napus HOM05D007303 ORTHO05D009231 8.3e-10 66.6 36 80.6
CSS0019093 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 8.3e-10 66.6 36 80.6
CSS0017493 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 1.1e-09 66.2 36 80.6
CSS0048723 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 1.1e-09 66.2 36 80.6
Pp3c10_5690 Physcomitrium patens HOM05D007303 ORTHO05D009231 1.1e-09 66.2 53 52.8
Pp3c10_5720 Physcomitrium patens HOM05D007303 ORTHO05D009231 1.1e-09 66.2 53 52.8
Zm00001eb290920 Zea mays HOM05D007303 ORTHO05D009231 4.1e-09 64.3 38 71.1
CBR_g5630 Chara braunii HOM05D007303 ORTHO05D009231 2.0e-08 62.0 55 47.3
Cc07_g13470 Coffea canephora HOM05D007303 ORTHO05D009231 2.0e-08 62.0 46 58.7


User provided reference genes

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