Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 5.7e-125 451.1 248 100.0
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 1.5e-117 426.4 249 95.6
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 4.1e-115 418.3 249 94.4
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 3.2e-112 408.7 248 92.7
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 9.5e-72 274.2 235 74.9
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 7.6e-61 238.0 263 57.4
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 1.6e-58 230.3 272 58.1
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 1.4e-51 207.2 256 53.5
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.2e-50 204.1 256 53.1
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 1.3e-49 200.7 249 54.2
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 8.7e-49 198.0 272 50.4
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 7.3e-48 194.9 266 50.8
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 3.6e-47 192.6 276 49.3
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 4.8e-47 192.2 256 50.8
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 8.1e-47 191.4 275 49.5
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 1.8e-46 190.3 270 48.9
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 4.0e-46 189.1 262 51.9
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 9.0e-46 188.0 259 51.0
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 2.0e-45 186.8 273 49.1
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 2.6e-45 186.4 257 50.6
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 1.7e-44 183.7 265 47.9
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 2.9e-44 183.0 257 54.1
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 2.9e-44 183.0 259 53.3
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 3.8e-44 182.6 269 47.2
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 5.4e-43 178.7 254 50.4
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 9.3e-43 177.9 253 49.0
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 1.2e-42 177.6 261 49.4
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 2.7e-42 176.4 248 49.6
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 3.5e-42 176.0 218 50.9
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 3.5e-42 176.0 251 49.4
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 4.6e-42 175.6 247 51.8
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 6.0e-42 175.3 266 47.0
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 1.5e-40 170.6 259 49.0
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.9e-40 170.2 263 48.3
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 2.5e-40 169.9 265 46.0
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 3.3e-40 169.5 263 47.1
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 3.3e-40 169.5 258 53.9
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.3e-39 167.5 249 51.8
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 2.1e-39 166.8 263 47.9
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 6.2e-39 165.2 251 47.4
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 4.0e-38 162.5 250 45.2
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 1.7e-36 157.1 249 47.0
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 2.9e-36 156.4 241 48.5
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 3.8e-36 156.0 252 46.0
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 1.4e-35 154.1 258 44.6
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 1.2e-34 151.0 267 44.2
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.7e-34 149.8 255 45.9
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 3.0e-33 146.4 247 47.8
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 5.1e-33 145.6 254 45.7
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.7e-33 145.2 254 45.7
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 6.7e-33 145.2 257 45.5
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 1.1e-32 144.4 258 45.7
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 4.3e-32 142.5 256 44.5
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 9.6e-32 141.4 259 45.6
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 2.1e-31 140.2 258 42.6
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 3.7e-31 139.4 242 44.2
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 4.8e-31 139.0 175 52.0
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 1.1e-30 137.9 266 42.5
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 1.1e-30 137.9 262 45.0
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 1.4e-30 137.5 262 42.4
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 1.4e-30 137.5 262 42.4
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 3.1e-30 136.3 264 43.9
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 4.0e-30 136.0 263 43.3
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 4.0e-30 136.0 271 42.4
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 5.3e-30 135.6 278 42.1
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 9.0e-30 134.8 248 42.7
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.2e-29 134.4 249 46.2
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 1.5e-29 134.0 263 42.6
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 1.5e-29 134.0 263 42.6
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 2.0e-29 133.7 245 41.6
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 2.6e-29 133.3 247 42.9
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 2.6e-29 133.3 254 41.3
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 4.5e-29 132.5 286 39.2
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 5.8e-29 132.1 267 41.9
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 5.8e-29 132.1 270 41.5
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 7.6e-29 131.7 252 42.1
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 1.3e-28 131.0 249 40.2
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 1.7e-28 130.6 263 43.0
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 2.2e-28 130.2 245 41.6
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.9e-28 129.8 247 42.5
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.9e-28 129.8 268 39.9
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.8e-28 129.4 186 46.8
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.8e-28 129.4 180 47.8
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 4.9e-28 129.0 262 43.5
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 4.9e-28 129.0 249 40.2
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 6.5e-28 128.6 186 44.6
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 6.5e-28 128.6 247 43.3
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.1e-27 127.9 186 44.6
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 1.1e-27 127.9 260 42.3
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 1.9e-27 127.1 249 40.2
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 4.2e-27 125.9 249 40.2
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 4.2e-27 125.9 249 40.2
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 5.5e-27 125.6 249 41.8
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 5.5e-27 125.6 262 40.1
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 5.5e-27 125.6 245 39.6
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 7.1e-27 125.2 259 40.9
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 7.1e-27 125.2 259 40.9
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 7.1e-27 125.2 259 40.9
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 7.1e-27 125.2 262 39.3
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 9.3e-27 124.8 260 39.6
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.2e-26 124.4 265 41.5
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 1.6e-26 124.0 259 41.3
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 2.7e-26 123.2 259 41.3
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 4.6e-26 122.5 278 37.4
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 6.1e-26 122.1 269 39.0
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 6.1e-26 122.1 261 38.7
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 7.9e-26 121.7 251 38.2
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 7.9e-26 121.7 205 44.4
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 1.0e-25 121.3 249 37.8
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.3e-25 120.9 266 39.8
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 2.3e-25 120.2 193 56.0
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 3.0e-25 119.8 246 41.1
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 8.7e-25 118.2 252 39.7
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 8.7e-25 118.2 254 39.4
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 8.7e-25 118.2 267 40.1
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.5e-24 117.5 260 38.5
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.5e-24 117.5 256 39.8
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 1.9e-24 117.1 270 40.7
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 3.3e-24 116.3 263 39.9
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 4.3e-24 115.9 193 41.5
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 5.7e-24 115.5 259 36.3
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.3e-23 114.4 246 37.0
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 2.2e-23 113.6 191 40.8
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 8.2e-23 111.7 183 47.0
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.8e-22 110.5 257 35.8
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 4.1e-22 109.4 249 38.6
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 5.3e-22 109.0 259 35.1
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 9.0e-22 108.2 260 34.2
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 2.0e-21 107.1 261 37.2
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 1.3e-20 104.4 259 37.8
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.9e-20 103.2 187 41.7
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 3.8e-20 102.8 195 40.0
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 4.2e-19 99.4 248 37.9
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.6e-18 97.4 186 40.3
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 3.6e-18 96.3 189 42.9
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 7.9e-18 95.1 181 42.0
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.0e-17 93.2 186 40.3
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.7e-17 92.0 186 40.3
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 6.7e-17 92.0 163 43.6
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 8.8e-17 91.7 252 35.3
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.1e-16 91.3 169 45.0
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 1.1e-16 91.3 252 37.7
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 1.1e-16 91.3 248 36.3
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 5.7e-16 89.0 157 40.8
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 9.7e-16 88.2 175 44.0
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 9.7e-16 88.2 251 33.9
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 3.7e-15 86.3 188 37.2
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 1.5e-13 80.9 251 34.7
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 1.0e-12 78.2 165 38.2
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 1.1e-11 74.7 264 31.8
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.5e-11 73.6 159 37.1
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 3.2e-11 73.2 97 52.6
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 7.2e-11 72.0 82 48.8
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 9.4e-11 71.6 257 30.7
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.2e-10 71.2 141 41.1
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.6e-10 69.7 151 37.1
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 3.6e-10 69.7 88 50.0
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 5.1e-09 65.9 167 34.7
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 2.0e-08 63.9 150 34.0
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 3.7e-07 59.7 153 37.9


User provided reference genes

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