Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 3.0e-128 461.8 231 100.0
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 1.9e-127 459.1 231 99.6
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 4.6e-121 438.0 223 98.2
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 2.6e-111 405.6 231 86.6
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 6.3e-94 347.8 233 78.5
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 5.9e-84 314.7 241 70.1
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 7.8e-76 287.7 232 62.5
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 1.1e-74 283.9 234 61.5
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 6.1e-73 278.1 232 58.2
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 2.3e-72 276.2 231 60.2
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 4.0e-72 275.4 233 60.1
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 6.8e-72 274.6 232 63.4
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 8.9e-72 274.2 233 60.5
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 1.5e-71 273.5 234 59.0
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 1.5e-71 273.5 238 60.5
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 2.6e-71 272.7 238 60.1
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 9.8e-71 270.8 234 62.4
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 9.8e-71 270.8 232 60.8
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 3.7e-70 268.9 233 59.2
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 4.9e-70 268.5 235 60.0
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 4.9e-70 268.5 231 58.9
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 6.4e-70 268.1 236 59.3
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 1.1e-69 267.3 237 58.2
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 1.1e-69 267.3 237 58.2
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 2.4e-69 266.2 231 56.7
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 3.2e-69 265.8 231 60.6
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 4.1e-69 265.4 236 57.6
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 7.0e-69 264.6 140 95.0
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.6e-68 263.5 236 57.6
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 2.0e-68 263.1 231 59.3
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 6.0e-68 261.5 236 57.2
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 5.0e-67 258.5 231 56.7
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 4.3e-66 255.4 236 55.5
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 2.1e-65 253.1 229 56.8
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 3.6e-65 252.3 236 56.4
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 1.8e-64 250.0 232 54.3
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 4.0e-64 248.8 231 55.8
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 5.2e-64 248.4 232 56.9
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 7.5e-63 244.6 232 53.9
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 4.9e-62 241.9 234 58.1
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 4.9e-62 241.9 231 53.7
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 8.3e-62 241.1 232 53.9
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 8.3e-62 241.1 231 53.7
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 1.1e-61 240.7 230 56.1
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 1.9e-61 240.0 224 55.8
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 3.2e-61 239.2 227 54.6
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 4.1e-61 238.8 233 55.8
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 7.0e-61 238.0 231 53.7
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 1.2e-60 237.3 236 58.9
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 2.1e-60 236.5 247 57.5
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 4.6e-60 235.3 236 56.4
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 6.0e-60 235.0 234 53.4
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 2.5e-58 229.6 240 54.2
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 1.6e-57 226.9 237 52.3
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 4.7e-57 225.3 230 50.4
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 6.8e-56 221.5 234 51.3
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 1.5e-55 220.3 231 51.5
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 5.8e-55 218.4 231 48.5
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 1.7e-54 216.9 231 48.9
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 2.9e-54 216.1 234 50.9
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 3.2e-53 212.6 228 49.1
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 9.2e-53 211.1 233 49.4
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 3.0e-51 206.1 228 47.4
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 5.1e-51 205.3 228 50.0
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 5.1e-51 205.3 231 47.6
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 6.6e-51 204.9 227 50.7
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 2.8e-49 199.5 230 45.7
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 2.4e-48 196.4 241 49.4
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 4.0e-48 195.7 231 47.6
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 2.0e-47 193.4 236 48.3
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 5.8e-47 191.8 235 48.9
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 7.6e-47 191.4 237 47.7
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 7.6e-47 191.4 237 47.7
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 7.6e-47 191.4 237 47.7
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 2.9e-46 189.5 239 47.7
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 8.4e-46 188.0 237 47.7
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 1.1e-45 187.6 237 47.3
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 3.2e-45 186.0 237 49.4
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 3.2e-45 186.0 239 47.3
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 1.2e-44 184.1 229 44.1
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 2.1e-44 183.3 237 46.4
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 7.8e-44 181.4 232 45.7
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 3.9e-43 179.1 92 95.7
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 1.4e-40 170.6 92 91.3
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 4.0e-40 169.1 225 43.6
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 2.2e-38 163.3 136 58.1
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.9e-37 160.2 228 43.4
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 5.1e-35 152.1 232 41.4
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 1.3e-33 147.5 230 41.3
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 2.7e-28 129.8 229 38.4
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 7.9e-28 128.3 240 36.2
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 1.6e-25 120.6 115 50.4
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 6.9e-24 115.2 60 98.3
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 1.7e-22 110.5 60 95.0
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 2.9e-22 109.8 93 57.0
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.4e-21 107.5 158 41.8
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 4.6e-20 102.4 113 48.7
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 2.3e-19 100.1 163 35.6
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 5.6e-18 95.5 139 38.1
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 8.2e-17 91.7 253 29.6
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 5.3e-16 89.0 242 29.8
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 7.1e-13 78.6 232 28.0
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 7.1e-13 78.6 232 29.3
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 6.9e-08 62.0 253 25.3


User provided reference genes

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