Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2834 Fragaria x ananassa HOM05D067162 ORTHO05D208235 2.1e-157 558.9 270 100.0
FAN04G0071 Fragaria x ananassa HOM05D067162 ORTHO05D003346 1.9e-86 323.2 174 90.8
FAN22G1920 Fragaria x ananassa HOM05D001714 ORTHO05D001932 2.1e-19 100.5 67 74.6
FvH4_4g35120 Fragaria vesca HOM05D001714 ORTHO05D001932 2.5e-17 93.6 83 63.9
FAN07G0511 Fragaria x ananassa HOM05D001714 ORTHO05D001932 2.5e-17 93.6 83 63.9
FAN12G1383 Fragaria x ananassa HOM05D001714 ORTHO05D001932 2.5e-17 93.6 83 63.9
FAN25G1216 Fragaria x ananassa HOM05D003008 ORTHO05D003346 5.6e-17 92.4 47 89.4
RcHm_v2.0_Chr4g0444721 Rosa chinensis HOM05D001714 ORTHO05D001932 5.6e-17 92.4 83 62.7
FAN21G3010 Fragaria x ananassa HOM05D003008 ORTHO05D003346 2.1e-16 90.5 43 95.3
FvH4_3g11200 Fragaria vesca HOM05D003008 ORTHO05D003346 6.2e-16 89.0 48 85.4
FAN17G2422 Fragaria x ananassa HOM05D001714 ORTHO05D001932 8.1e-16 88.6 100 54.0
FAN16G1739 Fragaria x ananassa HOM05D003008 ORTHO05D003346 1.8e-15 87.4 43 93.0
RcHm_v2.0_Chr5g0018141 Rosa chinensis HOM05D003008 ORTHO05D003346 1.2e-14 84.7 47 80.9
TWI36G0791 Tripterygium wilfordii HOM05D001714 ORTHO05D001932 9.9e-14 81.6 83 54.2
Cc11_g14170 Coffea canephora HOM05D001714 ORTHO05D001932 6.4e-13 79.0 86 50.0
Manes.01G196100 Manihot esculenta HOM05D001714 ORTHO05D001932 6.4e-13 79.0 67 59.7
VMungo1215G0242 Vigna mungo HOM05D001714 ORTHO05D001932 6.4e-13 79.0 133 43.6
arahy.Tifrunner.gnm1.ann1.40ZXXI Arachis hypogaea HOM05D001714 ORTHO05D001932 8.4e-13 78.6 83 49.4
arahy.Tifrunner.gnm1.ann1.KT8QW0 Arachis hypogaea HOM05D001714 ORTHO05D001932 8.4e-13 78.6 83 49.4
Lalb_Chr05g0217221 Lupinus albus HOM05D001714 ORTHO05D001932 8.4e-13 78.6 92 52.2
Glyma.02G029600 Glycine max HOM05D001714 ORTHO05D001932 1.1e-12 78.2 133 43.6
DCAR_024522 Daucus carota HOM05D001714 ORTHO05D001932 1.9e-12 77.4 83 50.6
Gohir.D02G166200 Gossypium hirsutum HOM05D001714 ORTHO05D001932 1.9e-12 77.4 83 54.2
Gorai.005G186300 Gossypium raimondii HOM05D001714 ORTHO05D001932 1.9e-12 77.4 83 54.2
Phvul.002G075800 Phaseolus vulgaris HOM05D001714 ORTHO05D001932 1.9e-12 77.4 133 43.6
MD13G1086100 Malus domestica HOM05D001714 ORTHO05D001932 4.1e-12 76.3 83 54.2
Prupe.1G260600 Prunus persica HOM05D001714 ORTHO05D001932 4.1e-12 76.3 83 53.0
MSTRG.7866 Avicennia marina HOM05D001714 ORTHO05D001932 5.4e-12 75.9 86 52.3
Dinv31118 Davidia involucrata HOM05D001714 ORTHO05D001932 5.4e-12 75.9 83 53.0
Hma1.2p1_1049F.1_g251830 Hydrangea macrophylla HOM05D001714 ORTHO05D001932 5.4e-12 75.9 83 51.8
Potri.008G193500 Populus trichocarpa HOM05D001714 ORTHO05D001932 5.4e-12 75.9 86 51.2
Atru.chr11.1951 Acer truncatum HOM05D001714 ORTHO05D001932 9.2e-12 75.1 83 53.0
Gohir.A03G142900 Gossypium hirsutum HOM05D001714 ORTHO05D001932 9.2e-12 75.1 83 53.0
Lj3A1048G19 Lonicera japonica HOM05D001714 ORTHO05D001932 1.2e-11 74.7 83 53.0
Potri.010G036200 Populus trichocarpa HOM05D001714 ORTHO05D001932 1.2e-11 74.7 84 52.4
PGR102G1169 Punica granatum HOM05D001714 ORTHO05D001932 1.2e-11 74.7 83 51.8
QL03p066966 Quercus lobata HOM05D001714 ORTHO05D001932 1.2e-11 74.7 83 51.8
QL03p067069 Quercus lobata HOM05D001714 ORTHO05D001932 1.2e-11 74.7 83 51.8
Actinidia15001 Actinidia chinensis HOM05D001714 ORTHO05D001932 1.6e-11 74.3 83 50.6
MSTRG.628 Avicennia marina HOM05D001714 ORTHO05D001932 1.6e-11 74.3 85 49.4
Ca_18086_v3 Cicer arietinum L. HOM05D001714 ORTHO05D001932 1.6e-11 74.3 83 51.8
Ciclev10031692m.g Citrus clementina HOM05D001714 ORTHO05D001932 1.6e-11 74.3 83 49.4
Eucgr.B03370 Eucalyptus grandis HOM05D001714 ORTHO05D001932 1.6e-11 74.3 83 51.8
MD16G1085500 Malus domestica HOM05D001714 ORTHO05D001932 1.6e-11 74.3 83 53.0
THA.LOC104822954 Tarenaya hassleriana HOM05D001714 ORTHO05D001932 1.6e-11 74.3 101 45.5
TPR.G13503 Trifolium pratense HOM05D001714 ORTHO05D001932 1.6e-11 74.3 83 51.8
AT1G24120 Arabidopsis thaliana HOM05D001714 ORTHO05D001932 2.1e-11 73.9 83 50.6
Lalb_Chr09g0326531 Lupinus albus HOM05D001714 ORTHO05D001932 2.1e-11 73.9 133 41.4
AL1G37930 Arabidopsis lyrata HOM05D001714 ORTHO05D001932 2.7e-11 73.6 83 50.6
Carub.0001s2356 Capsella rubella HOM05D001714 ORTHO05D001932 2.7e-11 73.6 83 50.6
CARHR024400 Cardamine hirsuta HOM05D001714 ORTHO05D001932 2.7e-11 73.6 88 47.7
CiPaw.05G146000 Carya illinoinensis HOM05D001714 ORTHO05D001932 3.5e-11 73.2 67 56.7
Duzib248G0074 Durio zibethinus HOM05D001714 ORTHO05D001932 3.5e-11 73.2 83 51.8
Medtr5g035770 Medicago truncatula HOM05D001714 ORTHO05D001932 3.5e-11 73.2 83 50.6
Psat2g112160 Pisum sativum HOM05D001714 ORTHO05D001932 3.5e-11 73.2 87 50.6
Sc14g0008530 Simmondsia chinensis HOM05D001714 ORTHO05D001932 3.5e-11 73.2 86 51.2
Thecc.02G241000 Theobroma cacao HOM05D001714 ORTHO05D001932 3.5e-11 73.2 83 51.8
MBI14_g41052_MAGBIO Magnolia biondii HOM05D001714 ORTHO05D001932 4.6e-11 72.8 83 53.0
Sabra10G0028800 Salix brachista HOM05D001714 ORTHO05D001932 4.6e-11 72.8 83 50.6
COL.COLO4_37891 Corchorus olitorius HOM05D001714 ORTHO05D001932 7.8e-11 72.0 83 50.6
Glyma.01G036500 Glycine max HOM05D001714 ORTHO05D001932 7.8e-11 72.0 133 41.4
Lj2g0002794 Lotus japonicus HOM05D001714 ORTHO05D001932 7.8e-11 72.0 83 47.0
Cpa.g.sc367.1 Carica papaya HOM05D001714 ORTHO05D001932 1.0e-10 71.6 133 42.1
DCAR_007108 Daucus carota HOM05D001714 ORTHO05D001932 1.0e-10 71.6 67 53.7
Nn3g16996 Nelumbo nucifera HOM05D001714 ORTHO05D001932 1.0e-10 71.6 86 50.0
CDE10G0773 Ceratophyllum demersum HOM05D001714 ORTHO05D001932 1.3e-10 71.2 66 54.5
Gohir.D04G138300 Gossypium hirsutum HOM05D001714 ORTHO05D001932 1.3e-10 71.2 83 51.8
Gorai.012G123200 Gossypium raimondii HOM05D001714 ORTHO05D001932 1.3e-10 71.2 83 51.8
HPP92_010840 Vanilla planifolia HOM05D001714 ORTHO05D001932 1.3e-10 71.2 83 48.2
Thhalv10007684m.g Eutrema salsugineum HOM05D001714 ORTHO05D001932 1.7e-10 70.9 83 49.4
PSO478G1787 Papaver somniferum HOM05D001714 ORTHO05D001932 1.7e-10 70.9 85 49.4
Sed0021358 Sechium edule HOM05D001714 ORTHO05D001932 1.7e-10 70.9 83 50.6
BcaC05g26311 Brassica carinata HOM05D001714 ORTHO05D001932 2.3e-10 70.5 83 48.2
A09p40770 Brassica napus HOM05D001714 ORTHO05D001932 2.3e-10 70.5 83 48.2
BraA09t39571Z Brassica rapa HOM05D001714 ORTHO05D001932 2.3e-10 70.5 83 48.2
CiPaw.06G075400 Carya illinoinensis HOM05D001714 ORTHO05D001932 2.3e-10 70.5 83 50.6
Hma1.2p1_2649F.1_g326130 Hydrangea macrophylla HOM05D001714 ORTHO05D001932 2.3e-10 70.5 98 42.9
Oeu001653.1 Olea europaea HOM05D001714 ORTHO05D001932 2.3e-10 70.5 86 47.7
GSVIVG01020157001 Vitis vinifera HOM05D001714 ORTHO05D001932 2.3e-10 70.5 83 49.4
Aa31LG7G7890 Aethionema arabicum HOM05D001714 ORTHO05D001932 3.0e-10 70.1 83 49.4
ClCG09G022120 Citrullus lanatus HOM05D001714 ORTHO05D001932 3.0e-10 70.1 83 50.6
CsaV3_5G025060 Cucumis sativus L. HOM05D001714 ORTHO05D001932 3.0e-10 70.1 83 50.6
Lsat_1_v5_gn_4_6500 Lactuca sativa HOM05D001714 ORTHO05D001932 3.0e-10 70.1 85 49.4
THA.LOC104808895 Tarenaya hassleriana HOM05D001714 ORTHO05D001932 3.0e-10 70.1 83 50.6
C05p23220 Brassica napus HOM05D001714 ORTHO05D001932 3.9e-10 69.7 83 48.2
CSS0028277 Camellia sinensis var. sinensis HOM05D001714 ORTHO05D001932 3.9e-10 69.7 88 46.6
Nn4g22905 Nelumbo nucifera HOM05D001714 ORTHO05D001932 3.9e-10 69.7 82 50.0
PSO832G0530 Papaver somniferum HOM05D001714 ORTHO05D001932 3.9e-10 69.7 83 48.2
BolC5t31024H Brassica oleracea HOM05D001714 ORTHO05D001932 5.1e-10 69.3 83 48.2
Lsat_1_v5_gn_8_160460 Lactuca sativa HOM05D001714 ORTHO05D001932 5.1e-10 69.3 83 45.8
Peaxi162Scf01141g00124 Petunia axillaris HOM05D001714 ORTHO05D001932 5.1e-10 69.3 86 46.5
Rhsim12G0125100 Rhododendron simsii HOM05D001714 ORTHO05D001932 5.1e-10 69.3 83 49.4
Sp1g21450 Schrenkiella parvula HOM05D001714 ORTHO05D001932 5.1e-10 69.3 83 48.2
TAR622G0797 Trochodendron aralioides HOM05D001714 ORTHO05D001932 5.1e-10 69.3 86 46.5
Haze_12129 Corylus avellana HOM05D001714 ORTHO05D001932 6.6e-10 68.9 83 50.6
CDE05G2410 Ceratophyllum demersum HOM05D001714 ORTHO05D001932 8.6e-10 68.6 88 45.5
Duzib251G0083 Durio zibethinus HOM05D001714 ORTHO05D001932 8.6e-10 68.6 83 50.6
Aqoxy3G03096 Aquilegia oxysepala HOM05D001714 ORTHO05D001932 1.1e-09 68.2 86 46.5
TAR371G1255 Trochodendron aralioides HOM05D001714 ORTHO05D001932 1.1e-09 68.2 86 48.8
unitig_22.g6928 Utricularia gibba HOM05D001714 ORTHO05D001932 1.1e-09 68.2 81 48.1
ATR1149G095 Amborella trichopoda HOM05D001714 ORTHO05D001932 1.5e-09 67.8 83 50.6
EL10Ac6g13755 Beta vulgaris HOM05D001714 ORTHO05D001932 1.5e-09 67.8 83 49.4
CDE02G2728 Ceratophyllum demersum HOM05D001714 ORTHO05D001932 1.5e-09 67.8 88 45.5
ECA233G4680 Erigeron canadensis HOM05D001714 ORTHO05D001932 1.5e-09 67.8 78 50.0
Hund05944 Selenicereus undatus HOM05D001714 ORTHO05D001932 1.5e-09 67.8 86 48.8
Solyc05g006240.4 Solanum lycopersicum HOM05D001714 ORTHO05D001932 1.5e-09 67.8 86 46.5
Sopen05g002260 Solanum pennellii HOM05D001714 ORTHO05D001932 1.5e-09 67.8 86 46.5
PGSC0003DMG400015608 Solanum tuberosum HOM05D001714 ORTHO05D001932 1.5e-09 67.8 86 46.5
CSS0000479 Camellia sinensis var. sinensis HOM05D001714 ORTHO05D001932 1.9e-09 67.4 83 47.0
TAR374G1643 Trochodendron aralioides HOM05D001714 ORTHO05D001932 1.9e-09 67.4 83 47.0
CANSAT01G0122 Cannabis sativa HOM05D001714 ORTHO05D001932 2.5e-09 67.0 87 46.0
vmacro16287 Vaccinium macrocarpon HOM05D001714 ORTHO05D001932 2.5e-09 67.0 83 45.8
MELO3C002995.2 Cucumis melo HOM05D001714 ORTHO05D001932 3.3e-09 66.6 95 42.1
Dinv24909 Davidia involucrata HOM05D001714 ORTHO05D001932 3.3e-09 66.6 83 49.4
Gohir.A04G098700 Gossypium hirsutum HOM05D001714 ORTHO05D001932 3.3e-09 66.6 83 51.8
Nitab4.5_0010523g0030 Nicotiana tabacum HOM05D001714 ORTHO05D001932 3.3e-09 66.6 95 43.2
PSO063G0283 Papaver somniferum HOM05D001714 ORTHO05D001932 3.3e-09 66.6 83 47.0
AT1G59980 Arabidopsis thaliana HOM05D001714 ORTHO05D001932 5.6e-09 65.9 83 47.0
AUR62026565 Chenopodium quinoa HOM05D001714 ORTHO05D001932 5.6e-09 65.9 83 48.2
Prupe.4G099900 Prunus persica HOM05D003008 ORTHO05D003346 5.6e-09 65.9 45 64.4
Zm00001eb254160 Zea mays HOM05D001714 ORTHO05D001932 5.6e-09 65.9 81 46.9
AL2G16750 Arabidopsis lyrata HOM05D001714 ORTHO05D001932 7.3e-09 65.5 88 44.3
BcaB07g32382 Brassica carinata HOM05D001714 ORTHO05D001932 7.3e-09 65.5 98 44.9
AUR62039419 Chenopodium quinoa HOM05D001714 ORTHO05D001932 7.3e-09 65.5 83 48.2
arahy.Tifrunner.gnm1.ann1.57FUCZ Arachis hypogaea HOM05D003008 ORTHO05D003346 9.6e-09 65.1 76 47.4
BcaB03g11967 Brassica carinata HOM05D001714 ORTHO05D001932 9.6e-09 65.1 88 43.2
CAN.G444.1 Capsicum annuum HOM05D001714 ORTHO05D001932 9.6e-09 65.1 83 45.8
HanXRQChr04g0103611 Helianthus annuus HOM05D001714 ORTHO05D001932 1.2e-08 64.7 83 48.2
Ah.02g131590 Amaranthus hybridus HOM05D001714 ORTHO05D001932 1.6e-08 64.3 81 48.1
Ah.03g132250 Amaranthus hybridus HOM05D001714 ORTHO05D001932 1.6e-08 64.3 78 50.0
ECA234G0274 Erigeron canadensis HOM05D001714 ORTHO05D001932 1.6e-08 64.3 83 48.2
Migut.L01452 Erythranthe guttata HOM05D001714 ORTHO05D001932 1.6e-08 64.3 40 72.5
Manes.05G091600 Manihot esculenta HOM05D001714 ORTHO05D001932 1.6e-08 64.3 83 49.4
Thhalv10023496m.g Eutrema salsugineum HOM05D001714 ORTHO05D001932 2.1e-08 63.9 83 42.2
Sp2g04620 Schrenkiella parvula HOM05D001714 ORTHO05D001932 2.1e-08 63.9 83 42.2
Zm00001eb279930 Zea mays HOM05D001714 ORTHO05D001932 2.1e-08 63.9 78 47.4
MD05G1265600 Malus domestica HOM05D003008 ORTHO05D003346 3.6e-08 63.2 39 69.2
BcaC04g22206 Brassica carinata HOM05D001714 ORTHO05D001932 4.7e-08 62.8 83 44.6
A09p17790 Brassica napus HOM05D001714 ORTHO05D001932 4.7e-08 62.8 83 44.6
C08p22270 Brassica napus HOM05D001714 ORTHO05D001932 4.7e-08 62.8 87 43.7
C09p22130 Brassica napus HOM05D001714 ORTHO05D001932 4.7e-08 62.8 83 44.6
BolC8t49869H Brassica oleracea HOM05D001714 ORTHO05D001932 4.7e-08 62.8 87 43.7
BolC9t55127H Brassica oleracea HOM05D001714 ORTHO05D001932 4.7e-08 62.8 83 44.6
BraA09t37411Z Brassica rapa HOM05D001714 ORTHO05D001932 4.7e-08 62.8 109 38.5
Hma1.2p1_2082F.1_g313580 Hydrangea macrophylla HOM05D001714 ORTHO05D001932 4.7e-08 62.8 51 62.7
arahy.Tifrunner.gnm1.ann1.MYLU20 Arachis hypogaea HOM05D003008 ORTHO05D003346 6.2e-08 62.4 69 49.3
SEGI_24174 Sequoiadendron giganteum HOM05D001714 ORTHO05D001932 6.2e-08 62.4 83 49.4
SGA_v2.0_scaffold166G38332 Striga asiatica HOM05D001714 ORTHO05D001932 8.1e-08 62.0 81 46.9
BcaC07g39229 Brassica carinata HOM05D001714 ORTHO05D001932 1.1e-07 61.6 92 41.3
BcaC07g39231 Brassica carinata HOM05D001714 ORTHO05D001932 1.1e-07 61.6 96 39.6
Carub.0002s0529 Capsella rubella HOM05D001714 ORTHO05D001932 1.1e-07 61.6 88 40.9
Glyma.09G028800 Glycine max HOM05D003008 ORTHO05D003346 1.1e-07 61.6 92 37.0
BcaB07g31194 Brassica carinata HOM05D001714 ORTHO05D001932 4.0e-07 59.7 83 43.4
PSO161G0004 Papaver somniferum HOM05D001714 ORTHO05D001932 4.0e-07 59.7 58 58.6
HanXRQChr12g0371281 Helianthus annuus HOM05D001714 ORTHO05D001932 5.2e-07 59.3 97 40.2
Aa31LG2G10250 Aethionema arabicum HOM05D001714 ORTHO05D001932 1.2e-06 58.2 79 44.3
MELO3C035679.2 Cucumis melo HOM05D003008 ORTHO05D003346 2.0e-06 57.4 45 53.3
Nitab4.5_0000257g0120 Nicotiana tabacum HOM05D001714 ORTHO05D001932 2.0e-06 57.4 40 65.0
ClCG03G008500 Citrullus lanatus HOM05D003008 ORTHO05D003346 5.8e-06 55.8 93 34.4
Manes.09G088066 Manihot esculenta HOM05D003008 ORTHO05D003346 5.8e-06 55.8 34 67.6
Sabra16G0312900 Salix brachista HOM05D003008 ORTHO05D003346 5.8e-06 55.8 41 56.1
Os02g0741100 Oryza sativa ssp. japonica HOM05D001714 ORTHO05D001932 7.6e-06 55.5 78 43.6
Phvul.006G124200 Phaseolus vulgaris HOM05D003008 ORTHO05D003346 7.6e-06 55.5 94 33.0


User provided reference genes

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