Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 9.1e-284 979.5 490 100.0
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 6.5e-274 946.8 490 96.3
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.7e-253 879.0 491 90.6
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.9e-253 877.5 491 90.4
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 1.2e-246 856.3 478 91.0
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.9e-233 812.4 491 85.9
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 7.1e-228 793.9 474 85.4
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 1.8e-202 709.5 468 76.3
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 9.1e-175 617.5 467 67.0
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 3.2e-172 609.0 465 66.0
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 5.5e-172 608.2 468 67.7
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 5.1e-170 601.7 468 64.7
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 2.0e-169 599.7 468 64.5
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 4.4e-169 598.6 469 63.8
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 1.3e-168 597.0 468 64.3
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 8.2e-168 594.3 468 64.7
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 3.1e-167 592.4 461 65.3
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 9.1e-167 590.9 461 65.7
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 9.1e-167 590.9 467 64.7
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 1.5e-166 590.1 461 65.1
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 8.5e-165 584.3 469 62.5
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.2e-163 580.5 490 61.2
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 2.7e-163 579.3 469 64.6
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 3.6e-163 578.9 464 61.4
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 6.7e-162 574.7 468 61.3
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 2.0e-161 573.2 471 62.6
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 4.4e-161 572.0 471 62.2
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 1.3e-160 570.5 461 62.5
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 1.3e-160 570.5 461 62.5
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 1.7e-160 570.1 464 60.1
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 2.2e-160 569.7 460 63.5
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 3.7e-160 568.9 462 62.1
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 1.1e-159 567.4 542 56.6
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 1.4e-159 567.0 440 65.5
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 4.1e-159 565.5 569 54.1
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 2.6e-158 562.8 460 63.0
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 1.0e-157 560.8 460 61.7
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 5.0e-157 558.5 524 56.9
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 8.5e-157 557.8 467 62.1
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 3.2e-156 555.8 463 62.6
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 3.2e-156 555.8 461 62.5
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 9.4e-156 554.3 467 60.6
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 3.6e-155 552.4 459 63.2
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 6.1e-155 551.6 461 62.7
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 1.0e-154 550.8 460 60.2
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 1.8e-154 550.1 471 59.9
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 3.0e-154 549.3 466 60.1
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 1.2e-153 547.4 465 59.4
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 1.3e-152 543.9 459 59.7
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 6.3e-152 541.6 463 59.0
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 1.1e-151 540.8 460 60.2
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 1.1e-151 540.8 461 60.1
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 1.1e-151 540.8 461 60.1
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 1.4e-151 540.4 461 59.4
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 1.8e-151 540.0 411 65.5
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 5.4e-151 538.5 463 59.6
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 7.0e-151 538.1 497 54.3
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 9.1e-151 537.7 400 67.5
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.6e-150 537.0 460 59.6
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 5.9e-150 535.0 461 59.9
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 2.2e-149 533.1 473 58.1
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 2.2e-149 533.1 456 57.9
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 3.8e-149 532.3 497 55.5
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 1.1e-148 530.8 461 59.7
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 1.9e-148 530.0 413 63.2
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 2.5e-148 529.6 411 66.4
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 3.2e-148 529.3 468 60.0
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 9.4e-148 527.7 467 60.4
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 1.6e-147 526.9 463 60.3
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 7.5e-145 518.1 490 56.3
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 1.3e-144 517.3 410 63.9
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 1.7e-144 516.9 462 59.5
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 9.1e-143 511.1 347 74.9
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 3.5e-142 509.2 602 47.8
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.0e-141 507.7 413 62.0
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 2.3e-138 496.5 465 54.2
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 9.8e-137 491.1 475 54.7
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 3.7e-136 489.2 396 64.4
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 6.4e-136 488.4 488 53.9
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 8.6e-133 478.0 438 58.2
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 1.8e-130 470.3 477 54.5
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 4.4e-129 465.7 347 66.6
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 3.0e-125 453.0 459 50.8
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 2.7e-118 429.9 434 54.6
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 8.9e-114 414.8 349 62.5
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 1.4e-111 407.5 455 48.8
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 5.4e-111 405.6 409 53.1
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 9.6e-108 394.8 312 62.8
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 2.0e-105 387.1 456 46.1
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 5.8e-105 385.6 453 46.4
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 7.1e-103 378.6 456 45.6
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.5e-100 370.2 314 59.6
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 1.8e-98 364.0 314 62.7
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 9.3e-95 351.7 277 64.6
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 3.6e-91 339.7 341 52.5
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 4.8e-91 339.3 466 40.8
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 4.2e-79 299.7 298 52.7
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 7.1e-79 298.9 385 43.9
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 3.3e-60 236.9 186 65.6
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 7.4e-60 235.7 293 47.4
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 2.0e-57 227.6 211 56.4
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 3.7e-51 206.8 160 68.1
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 4.7e-46 189.9 181 56.9
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 6.1e-46 189.5 146 68.5
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 8.0e-46 189.1 357 35.3
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 2.2e-43 181.0 331 35.6
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 8.2e-43 179.1 129 69.0
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 2.4e-42 177.6 218 44.0
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 1.1e-39 168.7 126 68.3
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 1.7e-35 154.8 173 50.9
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 4.1e-34 150.2 157 52.2
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 5.5e-31 139.8 92 66.3
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 5.5e-31 139.8 93 68.8
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 4.0e-29 133.7 98 67.3
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 8.3e-27 125.9 96 57.3
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 1.2e-22 112.1 390 25.6
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 5.6e-15 86.7 182 29.7
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 1.9e-10 71.6 55 60.0
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 7.0e-10 69.7 49 61.2
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 1.2e-09 68.9 69 52.2
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 7.8e-09 66.2 63 47.6
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 3.0e-08 64.3 68 48.5
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 4.3e-07 60.5 69 47.8
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 4.3e-07 60.5 69 47.8


User provided reference genes

Program Settings