Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.3e-145 518.8 258 100.0
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 5.4e-126 454.5 254 90.6
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 2.2e-124 449.1 220 100.0
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 8.8e-121 437.2 220 96.4
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 9.8e-120 433.7 220 96.4
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 4.0e-113 411.8 219 90.4
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 1.7e-103 379.8 215 84.7
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 3.9e-100 368.6 218 80.7
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 2.5e-99 365.9 216 80.6
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.8e-97 359.8 217 79.7
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 2.9e-95 352.4 215 78.6
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 4.9e-95 351.7 219 75.8
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 1.4e-94 350.1 211 77.3
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 1.4e-94 350.1 215 78.1
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 3.2e-94 349.0 217 78.3
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 4.6e-93 345.1 217 76.5
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 7.8e-93 344.4 217 77.4
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 1.3e-92 343.6 219 74.4
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 3.0e-92 342.4 216 75.0
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.5e-91 340.1 214 76.2
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 1.9e-91 339.7 218 74.3
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 5.6e-91 338.2 209 74.6
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.2e-90 337.0 211 78.7
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 3.6e-90 335.5 217 76.0
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 8.1e-90 334.3 217 74.7
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 1.1e-89 334.0 214 76.2
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 1.8e-89 333.2 216 75.5
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 2.3e-89 332.8 212 75.5
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 3.1e-89 332.4 219 77.6
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 3.1e-89 332.4 217 73.3
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 5.2e-89 331.6 219 72.6
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 1.5e-88 330.1 217 75.1
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 2.6e-88 329.3 214 75.7
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 3.4e-88 328.9 217 73.7
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 9.9e-88 327.4 219 73.5
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 1.3e-87 327.0 219 73.5
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 2.2e-87 326.2 225 69.8
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 6.4e-87 324.7 218 72.0
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 6.4e-87 324.7 217 74.2
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-85 320.5 216 72.2
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-85 320.5 216 72.2
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-85 320.5 216 72.2
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-85 320.5 216 72.2
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-85 320.5 216 72.2
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 2.1e-85 319.7 219 71.2
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 2.7e-85 319.3 219 71.7
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 1.3e-84 317.0 217 71.0
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 1.7e-84 316.6 212 70.8
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 6.6e-84 314.7 214 68.2
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 4.3e-83 312.0 217 68.7
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 5.6e-83 311.6 210 71.4
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 5.6e-83 311.6 212 70.3
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 5.6e-83 311.6 212 70.3
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 1.2e-82 310.5 218 69.7
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 1.6e-82 310.1 212 70.3
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 2.1e-82 309.7 210 70.0
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 4.7e-82 308.5 216 70.8
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 4.7e-82 308.5 216 70.8
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 6.2e-82 308.1 210 70.5
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 8.1e-82 307.8 210 70.0
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 1.1e-81 307.4 218 69.3
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 1.4e-81 307.0 210 70.0
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 1.4e-81 307.0 210 70.0
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 2.4e-81 306.2 218 69.3
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 3.1e-81 305.8 219 68.5
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 5.2e-81 305.1 219 68.0
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 5.2e-81 305.1 217 69.6
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 6.8e-81 304.7 214 69.2
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 8.9e-81 304.3 217 67.3
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 2.0e-80 303.1 217 67.7
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 3.4e-80 302.4 218 67.0
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 7.6e-80 301.2 220 65.5
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 2.9e-79 299.3 219 66.7
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 4.9e-79 298.5 200 71.0
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 8.4e-79 297.7 217 68.2
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 2.4e-78 296.2 217 69.6
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 2.4e-78 296.2 212 65.1
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 4.2e-78 295.4 219 66.7
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 4.2e-78 295.4 215 67.9
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 4.2e-78 295.4 217 67.7
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 5.4e-78 295.0 219 67.6
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 7.1e-78 294.7 217 69.1
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 7.1e-78 294.7 230 63.9
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 1.6e-77 293.5 220 66.8
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 2.7e-77 292.7 217 66.8
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 3.5e-77 292.4 217 67.3
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 3.5e-77 292.4 216 65.7
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 7.8e-77 291.2 219 65.8
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.7e-76 290.0 215 67.4
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 3.9e-76 288.9 211 68.7
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 5.1e-76 288.5 216 65.3
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.1e-75 287.3 217 65.4
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 1.5e-75 287.0 212 65.1
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 1.9e-75 286.6 208 67.8
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 3.3e-75 285.8 219 63.0
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 9.6e-75 284.3 218 64.7
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 9.6e-75 284.3 218 64.7
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 9.6e-75 284.3 219 64.8
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 9.6e-75 284.3 216 64.4
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 1.3e-74 283.9 219 64.4
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 1.6e-74 283.5 211 66.8
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 2.8e-74 282.7 218 60.6
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 3.6e-74 282.3 218 64.7
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 6.2e-74 281.6 184 71.7
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 4.0e-73 278.9 229 61.1
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 4.4e-72 275.4 217 64.1
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 7.6e-72 274.6 218 63.3
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 2.9e-71 272.7 213 64.3
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 4.9e-71 271.9 211 59.7
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 7.9e-69 264.6 208 59.6
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.9e-68 262.3 212 59.9
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 5.1e-68 261.9 227 52.9
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 5.6e-67 258.5 212 61.3
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 5.6e-67 258.5 212 61.3
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 1.6e-66 256.9 227 53.3
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.1e-66 256.5 168 76.8
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 3.6e-66 255.8 217 59.0
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.1e-65 254.2 212 60.4
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 3.1e-65 252.7 218 59.6
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 7.6e-64 248.1 167 73.7
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.2e-63 246.5 169 72.8
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 1.9e-62 243.4 159 73.6
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 1.2e-61 240.7 216 57.4
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 1.5e-59 233.8 134 82.1
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.0e-55 221.1 161 68.3
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 1.3e-55 220.7 169 65.1
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 3.2e-54 216.1 162 64.8
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 7.1e-54 214.9 216 54.2
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 1.2e-53 214.2 210 56.7
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 6.7e-52 208.4 216 51.9
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 4.1e-49 199.1 130 71.5
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 1.4e-46 190.7 136 66.9
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 7.9e-45 184.9 222 49.1
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 8.2e-42 174.9 217 48.8
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 3.4e-40 169.5 137 62.0
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 8.2e-34 148.3 92 78.3
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 1.8e-33 147.1 91 75.8
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 8.8e-28 128.3 96 64.6
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 1.1e-19 101.3 188 37.2
HanXRQChr16g0530661 Helianthus annuus HOM05D003144 ORTHO05D003539 3.5e-08 63.2 142 29.6
Cre06.g295250 Chlamydomonas reinhardtii HOM05D003144 ORTHO05D003539 5.9e-08 62.4 156 28.8
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 2.9e-07 60.1 158 29.1
Potri.007G021600 Populus trichocarpa HOM05D003144 ORTHO05D003539 2.9e-07 60.1 139 26.6
Actinidia19199 Actinidia chinensis HOM05D003144 ORTHO05D003539 3.8e-07 59.7 173 25.4
HanXRQChr14g0440521 Helianthus annuus HOM05D003144 ORTHO05D003539 5.0e-07 59.3 120 31.7
Manes.02G096600 Manihot esculenta HOM05D003144 ORTHO05D003539 5.0e-07 59.3 144 30.6
AUR62004088 Chenopodium quinoa HOM05D003144 ORTHO05D003539 1.5e-06 57.8 151 28.5
Sabra05G0099200 Salix brachista HOM05D003144 ORTHO05D003539 5.5e-06 55.8 141 29.1
AUR62004087 Chenopodium quinoa HOM05D003144 ORTHO05D003539 7.2e-06 55.5 155 27.1


User provided reference genes

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