Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-74 283.1 146 100.0
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.4e-54 216.5 110 99.1
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 6.9e-54 214.2 110 97.3
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.9e-54 214.2 110 97.3
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.9e-54 214.2 110 97.3
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 4.5e-53 211.5 110 94.5
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.9e-53 210.3 110 95.5
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 4.2e-43 178.3 108 79.6
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 4.6e-42 174.9 108 78.7
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 6.0e-42 174.5 108 76.9
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 2.4e-38 162.5 106 70.8
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 3.4e-37 158.7 106 71.7
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 3.4e-37 158.7 106 70.8
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 4.5e-37 158.3 106 69.8
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 4.5e-37 158.3 106 70.8
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 5.0e-36 154.8 106 68.9
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.6e-34 149.8 104 71.2
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 2.1e-34 149.4 106 65.1
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 3.6e-34 148.7 106 66.0
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 7.9e-34 147.5 106 67.0
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 1.4e-33 146.7 106 65.1
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 2.3e-33 146.0 104 69.2
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 3.0e-33 145.6 106 64.2
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 8.8e-33 144.1 106 65.1
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 1.1e-32 143.7 106 62.3
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 1.9e-32 142.9 106 64.2
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 3.3e-32 142.1 106 63.2
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 4.3e-32 141.7 106 62.3
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 1.3e-31 140.2 106 64.2
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 2.2e-31 139.4 106 61.3
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 2.8e-31 139.0 106 63.2
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.8e-31 139.0 106 60.4
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.8e-31 139.0 106 60.4
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 8.2e-31 137.5 106 60.4
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 8.2e-31 137.5 106 59.4
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 1.1e-30 137.1 106 60.4
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.8e-30 136.3 106 59.4
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.8e-30 136.3 106 59.4
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 2.4e-30 136.0 106 61.3
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.1e-30 135.6 108 59.3
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.1e-30 135.6 106 58.5
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 4.1e-30 135.2 106 60.4
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 4.1e-30 135.2 106 58.5
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 4.1e-30 135.2 106 58.5
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 6.9e-30 134.4 106 59.4
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 1.2e-29 133.7 107 58.9
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.0e-29 132.9 106 59.4
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 2.6e-29 132.5 106 56.6
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 2.6e-29 132.5 106 58.5
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 2.6e-29 132.5 106 60.4
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.4e-29 132.1 106 58.5
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.4e-29 132.1 106 58.5
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 4.5e-29 131.7 107 57.9
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 4.5e-29 131.7 94 63.8
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 5.9e-29 131.3 106 56.6
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 1.3e-28 130.2 104 60.6
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.3e-28 130.2 106 58.5
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.7e-28 129.8 106 56.6
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.2e-28 129.4 106 60.4
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.2e-28 129.4 106 59.4
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 2.9e-28 129.0 106 55.7
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 6.5e-28 127.9 102 60.8
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 8.5e-28 127.5 107 56.1
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 8.5e-28 127.5 106 58.5
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 8.5e-28 127.5 106 57.5
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.1e-27 127.1 106 57.5
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 1.9e-27 126.3 106 55.7
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 2.5e-27 125.9 106 58.5
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 3.2e-27 125.6 106 53.8
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 5.5e-27 124.8 106 56.6
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 5.5e-27 124.8 106 54.7
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 5.5e-27 124.8 106 54.7
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 5.5e-27 124.8 106 58.5
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 1.2e-26 123.6 106 53.8
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 1.6e-26 123.2 106 53.8
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 1.6e-26 123.2 106 53.8
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 2.1e-26 122.9 107 53.3
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.1e-26 122.9 106 55.7
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 2.7e-26 122.5 106 53.8
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 2.7e-26 122.5 106 56.6
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 2.7e-26 122.5 106 53.8
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 2.7e-26 122.5 106 56.6
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 3.6e-26 122.1 106 53.8
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 4.7e-26 121.7 106 56.6
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 6.1e-26 121.3 106 53.8
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 7.9e-26 120.9 106 56.6
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 7.9e-26 120.9 106 56.6
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 7.9e-26 120.9 106 54.7
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 1.4e-25 120.2 106 55.7
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.8e-25 119.8 106 52.8
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.8e-25 119.8 106 52.8
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 2.3e-25 119.4 106 54.7
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.0e-25 119.0 106 52.8
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 5.1e-25 118.2 106 53.8
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 8.8e-25 117.5 106 53.8
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.5e-24 116.7 106 50.9
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 7.4e-24 114.4 106 50.9
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 9.7e-24 114.0 106 49.1
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.3e-23 113.6 102 55.9
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 3.7e-23 112.1 106 50.0
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.7e-23 112.1 106 48.1
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.8e-23 111.7 106 48.1
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 4.8e-23 111.7 106 48.1
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 6.3e-23 111.3 106 51.9
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 6.3e-23 111.3 106 51.9
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 6.3e-23 111.3 94 53.2
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 1.8e-22 109.8 106 50.9
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.1e-22 108.6 106 49.1
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.5e-21 106.7 107 50.5
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.0e-21 106.3 107 51.4
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 8.5e-20 100.9 106 47.2
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 4.2e-19 98.6 94 51.1
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 4.2e-19 98.6 106 45.3
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 9.4e-19 97.4 106 49.1
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 3.6e-18 95.5 94 50.0
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 6.1e-18 94.7 105 46.7
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 1.1e-16 90.5 106 43.4
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.5e-16 90.1 101 46.5
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 2.6e-16 89.4 106 41.5
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 3.7e-15 85.5 72 55.6
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.1e-14 84.0 106 40.6
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 3.1e-14 82.4 106 37.7
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 5.3e-14 81.6 106 45.3
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 1.2e-13 80.5 108 38.9
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 1.6e-13 80.1 101 35.6
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 7.7e-13 77.8 97 40.2
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 1.3e-12 77.0 108 38.0
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 1.7e-12 76.6 106 41.5
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 2.2e-12 76.3 94 37.2
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 2.9e-12 75.9 106 41.5
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 6.5e-12 74.7 108 38.0
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 8.5e-12 74.3 106 40.6
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 3.6e-10 68.9 111 37.8
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.0e-09 67.4 63 50.8
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.3e-09 66.2 103 35.9
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 2.3e-09 66.2 48 64.6
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.4e-08 62.0 106 35.8
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 2.8e-07 59.3 98 37.8


User provided reference genes

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