Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2614 Fragaria x ananassa HOM05D001960 ORTHO05D004348 1.3e-60 236.1 111 100.0
HanXRQChr15g0474171 Helianthus annuus HOM05D001960 ORTHO05D004348 2.1e-55 218.8 103 99.0
FvH4_6g49160 Fragaria vesca HOM05D001960 ORTHO05D004348 4.7e-55 217.6 103 98.1
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 4.7e-55 217.6 103 98.1
FAN05G5323 Fragaria x ananassa HOM05D001960 ORTHO05D004348 4.7e-55 217.6 103 98.1
FAN14G2932 Fragaria x ananassa HOM05D001960 ORTHO05D004348 4.7e-55 217.6 103 98.1
HanXRQChr17g0547421 Helianthus annuus HOM05D001960 ORTHO05D004348 4.7e-55 217.6 103 98.1
Lsat_1_v5_gn_3_102160 Lactuca sativa HOM05D001960 ORTHO05D004348 4.7e-55 217.6 103 98.1
MD09G1048000 Malus domestica HOM05D001960 ORTHO05D004348 4.7e-55 217.6 103 98.1
MD17G1048200 Malus domestica HOM05D001960 ORTHO05D004348 4.7e-55 217.6 103 98.1
PSO017G2769 Papaver somniferum HOM05D001960 ORTHO05D004348 4.7e-55 217.6 103 98.1
PSO478G2180 Papaver somniferum HOM05D001960 ORTHO05D004348 4.7e-55 217.6 103 98.1
Aqoxy3G03291 Aquilegia oxysepala HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
Cpa.g.sc14.35 Carica papaya HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
DCAR_011153 Daucus carota HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
DCAR_011154 Daucus carota HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
Duzib187G1412 Durio zibethinus HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
FAN09G1760 Fragaria x ananassa HOM05D001960 ORTHO05D004348 1.1e-54 216.5 101 100.0
Gohir.A07G215700 Gossypium hirsutum HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
Gohir.A09G022100 Gossypium hirsutum HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
Gohir.D07G222700 Gossypium hirsutum HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
Gohir.D09G021300 Gossypium hirsutum HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
Gorai.001G257000 Gossypium raimondii HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
Gorai.006G025300 Gossypium raimondii HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
Prupe.3G271000 Prunus persica HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
RcHm_v2.0_Chr2g0169031 Rosa chinensis HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
Thecc.04G075700 Theobroma cacao HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
TAR374G0426 Trochodendron aralioides HOM05D001960 ORTHO05D004348 1.1e-54 216.5 103 97.1
Dinv33731 Davidia involucrata HOM05D001960 ORTHO05D004348 1.4e-54 216.1 103 96.1
ECA246G2943 Erigeron canadensis HOM05D001960 ORTHO05D004348 1.4e-54 216.1 103 97.1
EL10Ac2g02943 Beta vulgaris HOM05D001960 ORTHO05D004348 1.8e-54 215.7 103 96.1
AUR62031635 Chenopodium quinoa HOM05D001960 ORTHO05D004348 1.8e-54 215.7 103 96.1
AUR62038866 Chenopodium quinoa HOM05D001960 ORTHO05D004348 1.8e-54 215.7 103 96.1
CSS0024221 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 2.4e-54 215.3 103 97.1
ClCG10G014880 Citrullus lanatus HOM05D001960 ORTHO05D004348 2.4e-54 215.3 103 96.1
MELO3C009887.2 Cucumis melo HOM05D001960 ORTHO05D004348 2.4e-54 215.3 103 96.1
CsaV3_3G041630 Cucumis sativus L. HOM05D001960 ORTHO05D004348 2.4e-54 215.3 103 96.1
Lsat_1_v5_gn_2_88741 Lactuca sativa HOM05D001960 ORTHO05D004348 2.4e-54 215.3 103 96.1
Medtr7g009590 Medicago truncatula HOM05D001960 ORTHO05D004348 3.1e-54 214.9 103 96.1
Sed0008481 Sechium edule HOM05D001960 ORTHO05D004348 3.1e-54 214.9 103 95.1
Lj2A726T8 Lonicera japonica HOM05D001960 ORTHO05D004348 4.0e-54 214.5 103 97.1
Manes.17G022500 Manihot esculenta HOM05D001960 ORTHO05D004348 4.0e-54 214.5 103 96.1
Manes.17G022600 Manihot esculenta HOM05D001960 ORTHO05D004348 4.0e-54 214.5 103 96.1
CSS0022239 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 5.2e-54 214.2 103 96.1
CANSAT11G2018 Cannabis sativa HOM05D001960 ORTHO05D004348 5.2e-54 214.2 103 96.1
Ciclev10012084m.g Citrus clementina HOM05D001960 ORTHO05D004348 5.2e-54 214.2 103 96.1
Hma1.2p1_0449F.1_g155170 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 5.2e-54 214.2 103 96.1
Ah.12g065390 Amaranthus hybridus HOM05D001960 ORTHO05D004348 8.9e-54 213.4 103 95.1
CSS0002033 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 8.9e-54 213.4 103 96.1
Actinidia34797 Actinidia chinensis HOM05D001960 ORTHO05D004348 1.2e-53 213.0 103 95.1
Actinidia38882 Actinidia chinensis HOM05D001960 ORTHO05D004348 1.2e-53 213.0 103 95.1
COL.COLO4_25163 Corchorus olitorius HOM05D001960 ORTHO05D004348 1.2e-53 213.0 103 96.1
Duzib147G0831 Durio zibethinus HOM05D001960 ORTHO05D004348 1.2e-53 213.0 103 95.1
TAR629G1922 Trochodendron aralioides HOM05D001960 ORTHO05D004348 1.2e-53 213.0 103 96.1
Ah.10g031310 Amaranthus hybridus HOM05D001960 ORTHO05D004348 1.5e-53 212.6 103 94.2
Nn1g04484 Nelumbo nucifera HOM05D001960 ORTHO05D004348 1.5e-53 212.6 103 94.2
Psat3g196680 Pisum sativum HOM05D001960 ORTHO05D004348 1.5e-53 212.6 103 94.2
HPP92_006462 Vanilla planifolia HOM05D001960 ORTHO05D004348 1.5e-53 212.6 103 95.1
arahy.Tifrunner.gnm1.ann1.EZF2RR Arachis hypogaea HOM05D001960 ORTHO05D004348 2.0e-53 212.2 103 94.2
arahy.Tifrunner.gnm1.ann1.M50Q99 Arachis hypogaea HOM05D001960 ORTHO05D004348 2.0e-53 212.2 103 94.2
Hund13234 Selenicereus undatus HOM05D001960 ORTHO05D004348 2.0e-53 212.2 103 94.2
CiPaw.04G019300 Carya illinoinensis HOM05D001960 ORTHO05D004348 2.6e-53 211.8 103 94.2
Ca_04106_v3 Cicer arietinum L. HOM05D001960 ORTHO05D004348 3.4e-53 211.5 103 93.2
Ca_04115_v3 Cicer arietinum L. HOM05D001960 ORTHO05D004348 3.4e-53 211.5 103 93.2
PGR142G1484 Punica granatum HOM05D001960 ORTHO05D004348 3.4e-53 211.5 103 94.2
Lj1g0025494 Lotus japonicus HOM05D001960 ORTHO05D004348 4.4e-53 211.1 103 93.2
SGA_v2.0_scaffold236G43786 Striga asiatica HOM05D001960 ORTHO05D004348 5.8e-53 210.7 103 95.1
SGA_v2.0_scaffold30G12526 Striga asiatica HOM05D001960 ORTHO05D004348 5.8e-53 210.7 103 95.1
SalBow1G4343 Salvia bowleyana HOM05D001960 ORTHO05D004348 7.6e-53 210.3 103 95.1
Sed0005459 Sechium edule HOM05D001960 ORTHO05D004348 7.6e-53 210.3 103 93.2
THA.LOC104805447 Tarenaya hassleriana HOM05D001960 ORTHO05D004348 7.6e-53 210.3 103 93.2
THA.LOC104823931 Tarenaya hassleriana HOM05D001960 ORTHO05D004348 7.6e-53 210.3 103 93.2
CiPaw.03G029300 Carya illinoinensis HOM05D001960 ORTHO05D004348 9.9e-53 209.9 103 92.2
Eucgr.I01925 Eucalyptus grandis HOM05D001960 ORTHO05D004348 9.9e-53 209.9 103 94.2
Migut.K01329 Erythranthe guttata HOM05D001960 ORTHO05D004348 1.3e-52 209.5 103 95.1
Nitab4.5_0000098g0050 Nicotiana tabacum HOM05D001960 ORTHO05D004348 2.2e-52 208.8 103 93.2
Nitab4.5_0013371g0010 Nicotiana tabacum HOM05D001960 ORTHO05D004348 2.2e-52 208.8 103 93.2
Peaxi162Scf00163g00105 Petunia axillaris HOM05D001960 ORTHO05D004348 2.2e-52 208.8 103 93.2
Cfa007519 Carpinus fangiana HOM05D001960 ORTHO05D004348 2.9e-52 208.4 103 93.2
Haze_14570 Corylus avellana HOM05D001960 ORTHO05D004348 2.9e-52 208.4 103 93.2
Glyma.09G240300 Glycine max HOM05D001960 ORTHO05D004348 2.9e-52 208.4 103 92.2
Glyma.18G256200 Glycine max HOM05D001960 ORTHO05D004348 2.9e-52 208.4 103 92.2
Potri.017G079200 Populus trichocarpa HOM05D001960 ORTHO05D004348 2.9e-52 208.4 103 94.2
QL02p080802 Quercus lobata HOM05D001960 ORTHO05D004348 2.9e-52 208.4 103 92.2
TWI32G1350 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 2.9e-52 208.4 103 94.2
VMungo1383G3104 Vigna mungo HOM05D001960 ORTHO05D004348 2.9e-52 208.4 103 92.2
AT3G28715 Arabidopsis thaliana HOM05D001960 ORTHO05D004348 3.8e-52 208.0 103 92.2
BcaB07g30124 Brassica carinata HOM05D001960 ORTHO05D004348 3.8e-52 208.0 103 92.2
BcaC03g17524 Brassica carinata HOM05D001960 ORTHO05D004348 3.8e-52 208.0 103 92.2
A02p36010 Brassica napus HOM05D001960 ORTHO05D004348 3.8e-52 208.0 103 92.2
C02p54850 Brassica napus HOM05D001960 ORTHO05D004348 3.8e-52 208.0 103 92.2
BolC2t11546H Brassica oleracea HOM05D001960 ORTHO05D004348 3.8e-52 208.0 103 92.2
BraA02t08600Z Brassica rapa HOM05D001960 ORTHO05D004348 3.8e-52 208.0 103 92.2
TWI60G1096 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 3.8e-52 208.0 103 92.2
MSTRG.15485 Avicennia marina HOM05D001960 ORTHO05D004348 4.9e-52 207.6 103 94.2
MSTRG.3317 Avicennia marina HOM05D001960 ORTHO05D004348 4.9e-52 207.6 103 93.2
Hma1.2p1_0423F.1_g150240 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 4.9e-52 207.6 103 93.2
Manes.17G022700 Manihot esculenta HOM05D001960 ORTHO05D004348 4.9e-52 207.6 103 93.2
Oeu050223.1 Olea europaea HOM05D001960 ORTHO05D004348 4.9e-52 207.6 103 92.2
CAN.G128.149 Capsicum annuum HOM05D001960 ORTHO05D004348 6.4e-52 207.2 103 92.2
Migut.H00896 Erythranthe guttata HOM05D001960 ORTHO05D004348 6.4e-52 207.2 103 94.2
Phvul.008G043300 Phaseolus vulgaris HOM05D001960 ORTHO05D004348 6.4e-52 207.2 103 91.3
Sabra17G0070400 Salix brachista HOM05D001960 ORTHO05D004348 6.4e-52 207.2 103 93.2
Solyc10g081530.2 Solanum lycopersicum HOM05D001960 ORTHO05D004348 6.4e-52 207.2 103 92.2
Sopen10g032040 Solanum pennellii HOM05D001960 ORTHO05D004348 6.4e-52 207.2 103 92.2
PGSC0003DMG400028218 Solanum tuberosum HOM05D001960 ORTHO05D004348 6.4e-52 207.2 103 92.2
unitig_748.g8436 Utricularia gibba HOM05D001960 ORTHO05D004348 1.1e-51 206.5 103 93.2
Lalb_Chr21g0318931 Lupinus albus HOM05D001960 ORTHO05D004348 1.4e-51 206.1 103 91.3
AL5G18390 Arabidopsis lyrata HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
AL5G18410 Arabidopsis lyrata HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
AT3G28710 Arabidopsis thaliana HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
BcaC06g33635 Brassica carinata HOM05D001960 ORTHO05D008957 3.2e-51 204.9 103 91.3
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
A09p03760 Brassica napus HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
C09p03950 Brassica napus HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 3.2e-51 204.9 103 91.3
BolC9t53326H Brassica oleracea HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
BraA09t36012Z Brassica rapa HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
Carub.0005s0724 Capsella rubella HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
Carub.0005s0725 Capsella rubella HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
CARHR151640 Cardamine hirsuta HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
Thhalv10004497m.g Eutrema salsugineum HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
Thhalv10004498m.g Eutrema salsugineum HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
Lalb_Chr02g0159521 Lupinus albus HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 90.3
Lalb_Chr02g0159571 Lupinus albus HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 90.3
Nitab4.5_0002087g0050 Nicotiana tabacum HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
Sp2g17353 Schrenkiella parvula HOM05D001960 ORTHO05D004348 3.2e-51 204.9 103 91.3
Nitab4.5_0000387g0100 Nicotiana tabacum HOM05D001960 ORTHO05D004348 4.1e-51 204.5 103 91.3
BcaB04g19480 Brassica carinata HOM05D001960 ORTHO05D004348 5.4e-51 204.1 103 90.3
Oeu060924.1 Olea europaea HOM05D001960 ORTHO05D004348 5.4e-51 204.1 103 91.3
CDE06G0436 Ceratophyllum demersum HOM05D001960 ORTHO05D004348 2.1e-50 202.2 103 90.3
Aa31LG2G4500 Aethionema arabicum HOM05D001960 ORTHO05D004348 2.7e-50 201.8 103 88.3
CDE04G1714 Ceratophyllum demersum HOM05D001960 ORTHO05D004348 2.7e-50 201.8 103 91.3
Sp2g17360 Schrenkiella parvula HOM05D001960 ORTHO05D004348 2.7e-50 201.8 103 89.3
Zm00001eb160620 Zea mays HOM05D001960 ORTHO05D004348 2.7e-50 201.8 103 89.3
Aa31LG9G1760 Aethionema arabicum HOM05D001960 ORTHO05D004348 4.6e-50 201.1 103 89.3
Sc02g0007720 Simmondsia chinensis HOM05D001960 ORTHO05D004348 4.6e-50 201.1 103 87.4
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 6.0e-50 200.7 103 90.3
Atru.chr8.2689 Acer truncatum HOM05D001960 ORTHO05D004348 1.3e-49 199.5 94 98.9
Os01g0587000 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D004348 2.3e-49 198.7 103 86.4
TPR.G4258 Trifolium pratense HOM05D001960 ORTHO05D004348 9.6e-48 193.4 109 84.4
CSS0026364 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 1.2e-47 193.0 97 92.8
Pp3c20_18840 Physcomitrium patens HOM05D001960 ORTHO05D004348 2.1e-47 192.2 103 85.4
Mapoly0006s0177 Marchantia polymorpha HOM05D001960 ORTHO05D004348 6.2e-47 190.7 103 83.5
Mapoly0140s0023 Marchantia polymorpha HOM05D001960 ORTHO05D004348 3.1e-46 188.3 103 83.5
SMO137G0011 Selaginella moellendorffii HOM05D001960 ORTHO05D004348 3.4e-45 184.9 103 82.5
AagrBONN_evm.TU.Sc2ySwM_340.257 Anthoceros agrestis HOM05D001960 ORTHO05D004348 4.4e-45 184.5 103 81.6
vmacro10254 Vaccinium macrocarpon HOM05D001960 ORTHO05D004348 2.9e-44 181.8 171 56.7
CBR_g20991 Chara braunii HOM05D001960 ORTHO05D004348 8.4e-44 180.3 103 78.6
ATR0706G077 Amborella trichopoda HOM05D001960 ORTHO05D004348 7.1e-43 177.2 103 82.5
Peaxi162Scf00061g02912 Petunia axillaris HOM05D001960 ORTHO05D004348 7.8e-42 173.7 84 94.0
CBR_g20375 Chara braunii HOM05D001960 ORTHO05D004348 5.1e-41 171.0 103 73.8
BolC8t50104H Brassica oleracea HOM05D001960 ORTHO05D004348 8.4e-36 153.7 80 87.5
CSS0019148 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 1.6e-34 149.4 103 73.8
PRCOL_00003698 Prasinoderma coloniale HOM05D001960 ORTHO05D004348 6.0e-34 147.5 102 62.7
Cre03.g176250 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D004348 1.1e-32 143.3 103 60.2
Rhsim09G0146500 Rhododendron simsii HOM05D001960 ORTHO05D004348 1.5e-29 132.9 73 84.9
CARHR151620 Cardamine hirsuta HOM05D001960 ORTHO05D004348 3.5e-26 121.7 60 90.0
GSVIVG01011352001 Vitis vinifera HOM05D001960 ORTHO05D004348 2.3e-25 119.0 57 94.7
RcHm_v2.0_Chr4g0431361 Rosa chinensis HOM05D001960 ORTHO05D004348 6.7e-25 117.5 60 88.3
RcHm_v2.0_Chr6g0297701 Rosa chinensis HOM05D001960 ORTHO05D004348 1.6e-23 112.8 60 83.3
Dinv40238 Davidia involucrata HOM05D001960 ORTHO05D004348 7.6e-21 104.0 53 88.7
MCO01G616 Micromonas commoda HOM05D001960 ORTHO05D004348 2.5e-19 99.0 101 42.6
Haze_26410 Corylus avellana HOM05D001960 ORTHO05D004348 4.6e-18 94.7 93 47.3
Rhsim09G0146300 Rhododendron simsii HOM05D001960 ORTHO05D004348 1.5e-16 89.7 43 95.3
Cfa024469 Carpinus fangiana HOM05D001960 ORTHO05D004348 2.5e-16 89.0 99 43.4
Haze_26095 Corylus avellana HOM05D001960 ORTHO05D004348 2.5e-16 89.0 98 41.8
Medtr7g009485 Medicago truncatula HOM05D001960 ORTHO05D004348 3.3e-16 88.6 43 93.0
Hma1.2p1_2982F.1_g331260 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 7.4e-16 87.4 43 93.0
Zm00001eb357360 Zea mays HOM05D001960 ORTHO05D033473 1.6e-15 86.3 44 86.4
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 2.2e-15 85.9 46 82.6
Dinv33729 Davidia involucrata HOM05D001960 ORTHO05D004348 1.2e-13 80.1 43 88.4
C08p24880 Brassica napus HOM05D001960 ORTHO05D004348 1.3e-12 76.6 40 82.5


User provided reference genes

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