Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.2e-63 244.2 122 100.0
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.4e-38 161.8 118 73.7
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.2e-36 155.2 118 71.2
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 9.2e-36 153.7 122 71.3
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 2.9e-29 132.1 122 59.0
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 4.9e-21 104.8 116 47.4
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 6.0e-19 97.8 127 44.9
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-18 95.9 116 43.1
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-18 95.9 127 44.1
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.9e-18 95.1 119 42.9
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 5.1e-18 94.7 125 43.2
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-16 89.7 63 60.3
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 1.2e-14 83.6 120 42.5
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 1.5e-14 83.2 107 42.1
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 5.8e-14 81.3 112 45.5
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 7.6e-14 80.9 112 42.9
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 9.9e-14 80.5 54 59.3
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 1.3e-13 80.1 122 40.2
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.8e-13 78.6 112 40.2
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 6.4e-13 77.8 124 38.7
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 8.4e-13 77.4 112 40.2
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 1.9e-12 76.3 63 50.8
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.4e-12 75.9 75 45.3
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.2e-12 75.5 111 38.7
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.2e-12 75.5 111 38.7
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 4.2e-12 75.1 125 36.8
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 7.1e-12 74.3 53 60.4
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 7.1e-12 74.3 89 43.8
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 7.1e-12 74.3 51 60.8
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 1.2e-11 73.6 121 38.0
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 1.2e-11 73.6 60 51.7
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.6e-11 73.2 78 44.9
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.6e-11 73.2 73 47.9
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.6e-11 73.2 81 42.0
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 1.6e-11 73.2 83 44.6
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.1e-11 72.8 54 53.7
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 2.1e-11 72.8 54 59.3
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-11 72.8 49 59.2
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 2.7e-11 72.4 90 43.3
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 3.5e-11 72.0 73 46.6
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 3.5e-11 72.0 60 58.3
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 3.5e-11 72.0 125 39.2
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 4.6e-11 71.6 54 57.4
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 4.6e-11 71.6 121 39.7
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.6e-11 71.6 121 40.5
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.6e-11 71.6 121 38.0
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 4.6e-11 71.6 121 38.0
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.0e-11 71.2 120 33.3
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.0e-11 71.2 58 51.7
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 6.0e-11 71.2 55 54.5
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.9e-11 70.9 70 45.7
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 7.9e-11 70.9 124 36.3
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.0e-10 70.5 122 38.5
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 1.0e-10 70.5 70 45.7
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.0e-10 70.5 121 36.4
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 1.0e-10 70.5 81 44.4
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 1.3e-10 70.1 69 42.0
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 1.3e-10 70.1 49 55.1
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.8e-10 69.7 126 36.5
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.8e-10 69.7 120 33.3
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.8e-10 69.7 120 33.3
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.8e-10 69.7 54 55.6
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-10 69.3 121 38.8
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 2.3e-10 69.3 61 49.2
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.3e-10 69.3 122 36.9
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 2.3e-10 69.3 114 35.1
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 3.0e-10 68.9 122 35.2
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 3.0e-10 68.9 122 35.2
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 3.0e-10 68.9 50 56.0
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 3.0e-10 68.9 49 55.1
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.0e-10 68.9 58 50.0
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.9e-10 68.6 61 49.2
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 3.9e-10 68.6 112 39.3
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.1e-10 68.2 49 55.1
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.1e-10 68.2 102 38.2
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.1e-10 68.2 54 53.7
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 6.7e-10 67.8 121 33.1
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 6.7e-10 67.8 81 40.7
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 8.7e-10 67.4 54 50.0
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 8.7e-10 67.4 55 49.1
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 8.7e-10 67.4 113 36.3
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 8.7e-10 67.4 122 38.5
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 1.1e-09 67.0 80 40.0
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.1e-09 67.0 70 44.3
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.1e-09 67.0 52 51.9
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 1.5e-09 66.6 50 46.0
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.5e-09 66.6 55 49.1
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 1.5e-09 66.6 46 58.7
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 1.5e-09 66.6 51 51.0
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 1.5e-09 66.6 50 48.0
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.9e-09 66.2 53 50.9
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 1.9e-09 66.2 50 52.0
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 1.9e-09 66.2 52 51.9
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.9e-09 66.2 52 51.9
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 2.5e-09 65.9 83 39.8
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 2.5e-09 65.9 52 48.1
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-09 65.9 49 51.0
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 2.5e-09 65.9 50 52.0
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.3e-09 65.5 71 43.7
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 3.3e-09 65.5 51 49.0
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 4.3e-09 65.1 119 34.5
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 5.6e-09 64.7 54 48.1
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.6e-09 64.7 53 52.8
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.6e-09 64.7 53 52.8
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.6e-09 64.7 49 49.0
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 5.6e-09 64.7 51 51.0
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.6e-09 64.7 113 34.5
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.4e-09 64.3 110 35.5
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 7.4e-09 64.3 52 48.1
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 9.6e-09 63.9 49 55.1
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 9.6e-09 63.9 51 49.0
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.3e-08 63.5 53 47.2
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 1.3e-08 63.5 50 52.0
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 1.3e-08 63.5 50 52.0
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.6e-08 63.2 84 35.7
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 1.6e-08 63.2 50 50.0
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-08 63.2 50 50.0
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-08 62.8 49 46.9
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 2.8e-08 62.4 117 33.3
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 2.8e-08 62.4 52 48.1
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 2.8e-08 62.4 52 48.1
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.8e-08 62.4 51 51.0
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.8e-08 62.4 60 43.3
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 3.7e-08 62.0 48 50.0
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 3.7e-08 62.0 52 48.1
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.7e-08 62.0 52 46.2
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 3.7e-08 62.0 51 49.0
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 3.7e-08 62.0 51 49.0
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.8e-08 61.6 124 34.7
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.8e-08 61.6 130 31.5
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.8e-08 61.6 52 53.8
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.8e-08 61.6 49 53.1
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 4.8e-08 61.6 60 45.0
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 6.2e-08 61.2 84 34.5
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 6.2e-08 61.2 54 48.1
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.2e-08 61.2 62 38.7
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 8.1e-08 60.8 51 43.1
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 8.1e-08 60.8 125 35.2
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 8.1e-08 60.8 124 30.6
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 8.1e-08 60.8 53 45.3
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 8.1e-08 60.8 53 45.3
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 1.1e-07 60.5 51 45.1
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 1.1e-07 60.5 52 46.2
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 1.1e-07 60.5 52 46.2
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 1.1e-07 60.5 52 51.9
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.1e-07 60.5 76 38.2
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.4e-07 60.1 50 46.0
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.4e-07 60.1 55 41.8
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 1.8e-07 59.7 121 33.1
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.8e-07 59.7 49 46.9
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 2.4e-07 59.3 43 53.5
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 2.4e-07 59.3 50 50.0
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 2.4e-07 59.3 55 43.6
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.1e-07 58.9 52 40.4
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 3.1e-07 58.9 52 44.2
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.0e-07 58.5 51 45.1
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 4.0e-07 58.5 125 30.4
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 4.0e-07 58.5 111 30.6
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.3e-07 58.2 52 38.5
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.0e-07 57.4 51 37.3
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 9.0e-07 57.4 49 51.0
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.2e-06 57.0 57 40.4
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.2e-06 57.0 49 44.9
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 1.2e-06 57.0 51 47.1
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.5e-06 56.6 121 28.9
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.6e-06 55.8 48 45.8
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.6e-06 55.8 48 45.8
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 3.4e-06 55.5 51 41.2
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 3.4e-06 55.5 52 38.5
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 4.5e-06 55.1 48 41.7
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 4.5e-06 55.1 48 41.7
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 4.5e-06 55.1 45 48.9
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 4.5e-06 55.1 61 44.3
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 1.0e-05 53.9 51 37.3
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.0e-05 53.9 43 51.2


User provided reference genes

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