Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 3.2e-133 478.4 241 100.0
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 8.6e-86 320.9 169 95.9
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 3.9e-78 295.4 177 84.7
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.1e-75 287.3 177 81.4
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 1.4e-75 287.0 177 81.9
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 1.8e-75 286.6 177 80.8
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 2.4e-75 286.2 175 81.7
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 2.4e-75 286.2 177 80.8
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 5.2e-75 285.0 177 80.8
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 6.8e-75 284.6 177 80.8
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 6.8e-75 284.6 177 80.2
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 8.9e-75 284.3 177 81.4
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 1.2e-74 283.9 177 80.2
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 1.5e-74 283.5 177 80.2
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.5e-74 283.5 177 80.8
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 1.5e-74 283.5 177 80.2
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 2.0e-74 283.1 177 80.2
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 2.6e-74 282.7 177 80.2
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 2.6e-74 282.7 177 79.7
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 2.6e-74 282.7 177 79.7
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 3.4e-74 282.3 177 80.2
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 4.4e-74 282.0 177 79.7
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 5.8e-74 281.6 177 79.7
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 5.8e-74 281.6 177 78.0
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 7.6e-74 281.2 258 65.9
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 7.6e-74 281.2 176 80.1
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 7.6e-74 281.2 177 79.1
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 9.9e-74 280.8 180 78.3
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 9.9e-74 280.8 177 79.7
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 9.9e-74 280.8 177 80.8
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 9.9e-74 280.8 177 78.5
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 1.3e-73 280.4 177 78.5
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.3e-73 280.4 177 76.8
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 1.3e-73 280.4 177 79.1
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.7e-73 280.0 177 79.1
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.7e-73 280.0 177 79.1
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 2.2e-73 279.6 177 79.1
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 2.2e-73 279.6 177 79.1
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.2e-73 279.6 176 78.4
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 3.8e-73 278.9 177 78.5
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 3.8e-73 278.9 177 78.5
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 3.8e-73 278.9 177 80.2
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 3.8e-73 278.9 177 80.2
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 4.9e-73 278.5 177 78.0
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 4.9e-73 278.5 177 77.4
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 4.9e-73 278.5 172 80.2
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 4.9e-73 278.5 176 77.8
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 6.4e-73 278.1 173 80.3
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 6.4e-73 278.1 177 78.5
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 6.4e-73 278.1 177 79.1
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 8.4e-73 277.7 177 78.5
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 8.4e-73 277.7 177 79.1
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 1.1e-72 277.3 177 77.4
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.4e-72 276.9 177 76.8
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 1.4e-72 276.9 177 77.4
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 1.9e-72 276.6 177 80.2
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 4.2e-72 275.4 172 80.8
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 4.2e-72 275.4 174 79.3
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 5.4e-72 275.0 177 75.7
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 7.1e-72 274.6 177 76.8
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 7.1e-72 274.6 173 80.3
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 9.3e-72 274.2 173 79.2
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 9.3e-72 274.2 177 76.8
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 9.3e-72 274.2 172 80.8
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 2.1e-71 273.1 177 76.8
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 2.7e-71 272.7 180 75.6
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 4.6e-71 271.9 181 76.8
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 4.6e-71 271.9 174 77.0
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 6.0e-71 271.6 174 77.6
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 7.8e-71 271.2 177 76.3
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 7.8e-71 271.2 177 78.0
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 1.3e-70 270.4 196 71.9
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 1.9e-69 266.5 176 75.0
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 3.3e-69 265.8 194 71.1
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 4.3e-69 265.4 181 74.6
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 9.6e-69 264.2 173 75.7
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 2.1e-68 263.1 189 71.4
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 3.6e-68 262.3 177 75.1
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 8.1e-68 261.2 177 74.6
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 8.1e-68 261.2 177 74.6
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 1.1e-67 260.8 177 74.0
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 2.4e-67 259.6 177 73.4
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 3.1e-67 259.2 177 73.4
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 1.5e-66 256.9 177 72.9
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.5e-66 256.9 173 75.1
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 2.0e-66 256.5 177 72.9
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 4.4e-66 255.4 179 72.6
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 4.4e-66 255.4 174 74.1
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 4.4e-66 255.4 203 67.5
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 7.6e-66 254.6 176 72.7
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 9.9e-66 254.2 175 73.1
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 2.2e-65 253.1 183 71.0
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 2.2e-65 253.1 177 71.8
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 2.9e-65 252.7 174 73.0
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 1.4e-64 250.4 173 75.1
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 4.6e-63 245.4 136 89.7
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 1.7e-62 243.4 177 70.1
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 3.9e-62 242.3 136 86.8
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 5.1e-62 241.9 132 90.9
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.6e-60 236.9 177 71.2
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 6.2e-60 235.0 176 69.3
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 5.3e-59 231.9 136 81.6
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 1.1e-56 224.2 178 66.9
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 1.1e-56 224.2 148 72.3
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 2.4e-56 223.0 132 82.6
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 9.3e-56 221.1 144 72.9
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 1.0e-49 201.1 139 71.2
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 1.1e-48 197.6 176 62.5
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 2.7e-47 193.0 107 83.2
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 2.7e-47 193.0 125 76.8
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 3.9e-46 189.1 122 74.6
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 9.6e-45 184.5 177 49.7
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 8.2e-44 181.4 179 52.0
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 1.4e-43 180.6 144 64.6
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 5.0e-41 172.2 179 51.4
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 6.9e-35 151.8 91 75.8
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 3.4e-34 149.4 127 58.3
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 1.9e-32 143.7 100 71.0
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 4.2e-32 142.5 157 54.8
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 9.4e-32 141.4 87 80.5
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.2e-31 141.0 100 69.0
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 1.2e-31 141.0 100 69.0
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 3.9e-30 136.0 100 66.0
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 6.7e-30 135.2 134 56.7
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 1.7e-25 120.6 95 62.1
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 6.5e-25 118.6 70 87.1
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 1.1e-24 117.9 77 79.2
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.2e-24 116.3 108 57.4
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 2.7e-23 113.2 89 60.7
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.9e-23 111.7 87 65.5
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 2.0e-21 107.1 87 62.1
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.5e-13 78.6 87 50.6
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 9.7e-13 78.2 66 57.6
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.7e-12 77.4 49 77.6
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 8.2e-12 75.1 181 28.7
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 5.9e-10 68.9 181 29.3
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.0e-09 68.2 181 28.2
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 2.2e-09 67.0 181 29.3
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 2.2e-09 67.0 181 28.2
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.9e-09 66.6 181 27.6
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 5.0e-09 65.9 181 27.6
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 5.0e-09 65.9 181 28.2
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 6.5e-09 65.5 186 25.8
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.1e-08 64.7 181 27.1
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.1e-08 64.7 181 26.5
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.9e-08 63.9 183 27.9
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 4.2e-08 62.8 182 26.9
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 5.5e-08 62.4 181 27.1
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 7.2e-08 62.0 182 26.4
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 7.2e-08 62.0 181 26.5
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 9.4e-08 61.6 181 26.5
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.6e-07 60.8 181 27.1
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 2.7e-07 60.1 181 26.5
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 3.6e-07 59.7 181 26.0
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 3.6e-07 59.7 181 25.4
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 3.6e-07 59.7 180 28.3
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 6.1e-07 58.9 134 29.1
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.4e-06 57.8 180 25.6
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 3.0e-06 56.6 185 27.6


User provided reference genes

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