Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2365 Fragaria x ananassa HOM05D008360 ORTHO05D010532 9.2e-29 129.4 60 100.0
FAN14G5043 Fragaria x ananassa HOM05D008360 ORTHO05D010532 2.7e-28 127.9 60 98.3
RcHm_v2.0_Chr3g0476891 Rosa chinensis HOM05D008360 ORTHO05D010532 1.1e-16 89.4 47 80.9
RcHm_v2.0_Chr3g0476991 Rosa chinensis HOM05D008360 ORTHO05D010532 2.0e-15 85.1 46 80.4
CiPaw.09G045700 Carya illinoinensis HOM05D008360 ORTHO05D010532 5.8e-15 83.6 47 74.5
Duzib106G1984 Durio zibethinus HOM05D008360 ORTHO05D010532 1.3e-14 82.4 47 70.2
Manes.09G007500 Manihot esculenta HOM05D008360 ORTHO05D010532 2.9e-14 81.3 47 70.2
Potri.016G038300 Populus trichocarpa HOM05D008360 ORTHO05D010532 2.9e-14 81.3 47 74.5
Thecc.05G140600 Theobroma cacao HOM05D008360 ORTHO05D010532 3.7e-14 80.9 47 70.2
Duzib093G1186 Durio zibethinus HOM05D008360 ORTHO05D010532 4.9e-14 80.5 47 68.1
Dinv34381 Davidia involucrata HOM05D008360 ORTHO05D010532 6.4e-14 80.1 50 66.0
Prupe.7G043000 Prunus persica HOM05D008360 ORTHO05D010532 6.4e-14 80.1 47 72.3
Hma1.2p1_1048F.1_g251690 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 1.1e-13 79.3 47 68.1
CAN.G1237.40 Capsicum annuum HOM05D008360 ORTHO05D010532 5.4e-13 77.0 47 66.0
Solyc04g040000.2 Solanum lycopersicum HOM05D008360 ORTHO05D010532 7.1e-13 76.6 53 62.3
AUR62031993 Chenopodium quinoa HOM05D000009 ORTHO05D000008 9.2e-13 76.3 46 69.6
Cc06_g18840 Coffea canephora HOM05D008360 ORTHO05D010532 9.2e-13 76.3 47 63.8
Potri.006G041600 Populus trichocarpa HOM05D008360 ORTHO05D010532 2.1e-12 75.1 47 70.2
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 2.7e-12 74.7 46 63.0
Manes.08G057500 Manihot esculenta HOM05D008360 ORTHO05D010532 3.5e-12 74.3 47 66.0
Nitab4.5_0002162g0190 Nicotiana tabacum HOM05D008360 ORTHO05D010532 4.6e-12 73.9 45 64.4
Hund24629 Selenicereus undatus HOM05D008360 ORTHO05D010532 4.6e-12 73.9 47 63.8
COL.COLO4_37957 Corchorus olitorius HOM05D008360 ORTHO05D010532 2.3e-11 71.6 47 63.8
arahy.Tifrunner.gnm1.ann1.LHUB84 Arachis hypogaea HOM05D008360 ORTHO05D010532 3.9e-11 70.9 47 63.8
CSS0042665 Camellia sinensis var. sinensis HOM05D008360 ORTHO05D010532 5.1e-11 70.5 42 71.4
Migut.K00128 Erythranthe guttata HOM05D008360 ORTHO05D010532 5.1e-11 70.5 47 63.8
unitig_8.g3490 Utricularia gibba HOM05D008360 ORTHO05D010532 8.6e-11 69.7 47 57.4
Sabra06G0028300 Salix brachista HOM05D008360 ORTHO05D010532 1.9e-10 68.6 44 68.2
Migut.J01675 Erythranthe guttata HOM05D008360 ORTHO05D010532 2.5e-10 68.2 47 61.7
Lj1g0003695 Lotus japonicus HOM05D008360 ORTHO05D010532 2.5e-10 68.2 49 55.1
Phvul.001G125600 Phaseolus vulgaris HOM05D008360 ORTHO05D010532 3.3e-10 67.8 47 59.6
Gohir.A09G118500 Gossypium hirsutum HOM05D008360 ORTHO05D010532 1.2e-09 65.9 47 59.6
Gohir.D09G115400 Gossypium hirsutum HOM05D008360 ORTHO05D010532 1.2e-09 65.9 47 59.6
Gorai.006G133100 Gossypium raimondii HOM05D008360 ORTHO05D010532 1.2e-09 65.9 47 59.6
Aa31LG10G11990 Aethionema arabicum HOM05D008360 ORTHO05D010532 3.6e-09 64.3 47 55.3
Lalb_Chr25g0286871 Lupinus albus HOM05D008360 ORTHO05D010532 1.1e-08 62.8 46 63.0
Thhalv10006358m.g Eutrema salsugineum HOM05D008360 ORTHO05D010532 1.4e-08 62.4 47 55.3
Medtr7g090260 Medicago truncatula HOM05D008360 ORTHO05D010532 3.1e-08 61.2 47 51.1
CARHR167260 Cardamine hirsuta HOM05D008360 ORTHO05D010532 4.0e-08 60.8 47 53.2
RcHm_v2.0_Chr3g0477841 Rosa chinensis HOM05D008360 ORTHO05D010532 5.2e-08 60.5 29 89.7
A09p49990 Brassica napus HOM05D008360 ORTHO05D010532 8.9e-08 59.7 47 51.1
C08p32400 Brassica napus HOM05D008360 ORTHO05D010532 8.9e-08 59.7 47 51.1
BolC8t50854H Brassica oleracea HOM05D008360 ORTHO05D010532 8.9e-08 59.7 47 51.1
BraA09t40449Z Brassica rapa HOM05D008360 ORTHO05D010532 8.9e-08 59.7 47 51.1
Carub.0005s2387 Capsella rubella HOM05D008360 ORTHO05D010532 1.2e-07 59.3 47 48.9
PSO384G3670 Papaver somniferum HOM05D008360 ORTHO05D010532 1.2e-07 59.3 46 56.5
THA.LOC104824413 Tarenaya hassleriana HOM05D008360 ORTHO05D010532 1.2e-07 59.3 47 46.8
AL5G38550 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 2.0e-07 58.5 47 48.9
AT3G57062 Arabidopsis thaliana HOM05D008360 ORTHO05D010532 2.0e-07 58.5 47 48.9
Actinidia17687 Actinidia chinensis HOM05D008360 ORTHO05D010532 2.6e-07 58.2 39 59.0
Hma1.2p1_1048F.1_g251680 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 2.6e-07 58.2 47 55.3
Lalb_Chr20g0110161 Lupinus albus HOM05D008360 ORTHO05D010532 4.4e-07 57.4 48 58.3
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 5.8e-07 57.0 37 56.8
Os07g0213500 Oryza sativa ssp. japonica HOM05D008360 ORTHO05D010532 3.7e-06 54.3 45 48.9
BcaC02g12894 Brassica carinata HOM05D008360 ORTHO05D010532 6.4e-06 53.5 47 44.7
Os03g0810500 Oryza sativa ssp. japonica HOM05D008360 ORTHO05D010532 8.4e-06 53.1 47 48.9


User provided reference genes

Program Settings