Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.9e-160 568.5 291 100.0
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.4e-146 522.3 291 92.4
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 6.2e-123 444.5 239 94.6
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 2.4e-122 442.6 239 94.1
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.3e-120 436.8 239 93.3
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 5.9e-89 331.6 243 72.8
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 4.7e-62 242.3 267 49.4
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 6.4e-59 231.9 242 52.9
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 4.6e-57 225.7 240 51.2
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 4.6e-57 225.7 242 50.0
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 9.5e-55 218.0 259 46.7
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 1.5e-52 210.7 239 47.3
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 2.0e-52 210.3 215 49.8
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 1.7e-51 207.2 242 47.1
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 1.1e-50 204.5 239 46.4
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 1.1e-50 204.5 238 46.2
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 1.9e-50 203.8 206 51.0
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 3.2e-50 203.0 244 47.5
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 4.1e-50 202.6 241 47.7
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 4.1e-50 202.6 237 46.4
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 7.1e-50 201.8 242 45.0
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 9.2e-50 201.4 241 47.3
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 2.7e-49 199.9 239 46.4
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 1.7e-48 197.2 241 48.1
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 3.0e-48 196.4 242 44.6
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 3.9e-48 196.1 239 44.8
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 3.9e-48 196.1 239 44.8
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 8.6e-48 194.9 236 44.5
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 1.6e-46 190.7 241 46.1
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 1.6e-46 190.7 239 45.2
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 2.8e-46 189.9 241 44.8
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 6.2e-46 188.7 239 43.9
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 1.1e-45 188.0 208 46.2
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 2.3e-45 186.8 239 42.7
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 3.1e-45 186.4 207 43.5
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 3.1e-45 186.4 239 43.5
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 1.2e-44 184.5 241 39.8
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 1.2e-44 184.5 243 42.8
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 1.5e-44 184.1 241 42.7
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 2.6e-44 183.3 229 41.9
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 5.8e-44 182.2 209 45.9
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 1.7e-43 180.6 211 45.0
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 2.9e-43 179.9 226 45.1
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 2.9e-43 179.9 242 40.1
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 4.9e-43 179.1 244 41.8
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 8.3e-43 178.3 241 39.0
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 1.1e-42 177.9 227 44.5
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 1.1e-42 177.9 235 42.6
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 1.9e-42 177.2 227 44.5
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 3.2e-42 176.4 185 47.0
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 1.2e-41 174.5 242 43.0
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 2.1e-41 173.7 222 43.2
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 2.1e-41 173.7 198 47.5
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 3.5e-41 172.9 236 40.7
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 6.0e-41 172.2 230 41.7
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 1.3e-40 171.0 244 41.8
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 1.7e-40 170.6 202 44.1
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 3.0e-40 169.9 218 43.6
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 1.5e-39 167.5 241 37.8
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 3.3e-39 166.4 241 37.8
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 5.6e-39 165.6 184 43.5
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 5.6e-39 165.6 171 46.8
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 9.6e-39 164.9 241 38.2
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 9.6e-39 164.9 242 39.7
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 9.6e-39 164.9 242 36.8
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 9.6e-39 164.9 242 37.2
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 2.8e-38 163.3 170 48.2
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 6.2e-38 162.2 208 39.9
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 8.1e-38 161.8 249 40.2
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 1.1e-37 161.4 241 38.2
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 1.1e-37 161.4 204 38.7
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 1.1e-37 161.4 242 38.0
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 1.4e-37 161.0 241 37.8
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 1.4e-37 161.0 184 42.4
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 6.8e-37 158.7 241 38.2
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 6.8e-37 158.7 241 40.2
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 1.5e-36 157.5 241 39.4
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 7.6e-36 155.2 229 41.0
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 3.2e-34 149.8 241 36.9
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 2.1e-33 147.1 241 37.3
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 2.1e-33 147.1 237 37.1
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 7.8e-33 145.2 241 36.1
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 2.5e-31 140.2 302 30.8
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 4.3e-31 139.4 179 41.3
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 4.3e-31 139.4 180 41.7
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 7.3e-31 138.7 170 41.8
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 1.5e-28 131.0 161 40.4
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 7.6e-28 128.6 244 34.4
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 7.6e-28 128.6 241 34.4
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 2.2e-27 127.1 262 32.8
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 2.8e-22 110.2 165 39.4
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 3.6e-22 109.8 235 33.2
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 3.6e-22 109.8 150 38.7
Aqoxy2G01927 Aquilegia oxysepala HOM05D007171 ORTHO05D008946 4.8e-22 109.4 112 46.4
CARHR210640 Cardamine hirsuta HOM05D007171 ORTHO05D008946 1.2e-17 94.7 164 34.8
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 4.6e-17 92.8 85 47.1
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 1.1e-15 88.2 124 35.5
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 2.1e-14 84.0 80 46.2
Ah.08g212060 Amaranthus hybridus HOM05D007171 ORTHO05D008946 3.7e-14 83.2 93 41.9
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 5.3e-13 79.3 71 49.3
SMO358G0627 Selaginella moellendorffii HOM05D007171 ORTHO05D008946 1.0e-11 75.1 185 27.0
Ah.08g212070 Amaranthus hybridus HOM05D007171 ORTHO05D008946 3.2e-10 70.1 78 44.9
MBI14_g16337_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 4.6e-09 66.2 68 50.0
Mapoly0061s0086 Marchantia polymorpha HOM05D007171 ORTHO05D008946 6.7e-08 62.4 245 26.1
HanXRQChr13g0399281 Helianthus annuus HOM05D007171 ORTHO05D008946 3.3e-07 60.1 72 43.1
CBR_g5643 Chara braunii HOM05D062952 ORTHO05D008946 4.3e-07 59.7 260 22.3


User provided reference genes

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