Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.8e-97 357.5 168 100.0
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 3.6e-91 338.2 165 95.8
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.9e-88 327.8 163 94.5
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.2e-87 325.1 160 95.0
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 3.5e-86 321.6 168 89.3
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.4e-79 298.9 165 88.5
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 6.7e-61 237.7 159 71.1
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 8.2e-51 204.1 155 60.6
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 3.6e-46 188.7 164 56.7
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 3.3e-44 182.2 165 54.5
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 5.3e-42 174.9 139 59.7
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 4.2e-39 165.2 164 51.8
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.6e-38 163.3 162 50.0
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.1e-38 162.9 162 50.0
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 8.0e-38 161.0 153 52.9
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 6.7e-37 157.9 160 53.1
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 3.3e-36 155.6 151 52.3
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.8e-34 149.8 155 49.0
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 4.1e-34 148.7 148 50.7
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 7.0e-34 147.9 162 46.3
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 1.0e-32 144.1 136 52.9
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.7e-32 143.3 120 55.0
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 2.2e-32 142.9 142 52.1
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 6.5e-32 141.4 148 50.0
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.9e-31 139.8 163 44.2
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 3.2e-31 139.0 147 47.6
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 4.2e-31 138.7 165 44.2
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 4.2e-31 138.7 123 55.3
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 7.2e-31 137.9 147 46.9
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.2e-30 137.1 142 51.4
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 2.7e-30 136.0 118 58.5
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 2.7e-30 136.0 126 52.4
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 6.1e-30 134.8 138 49.3
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 1.4e-29 133.7 108 55.6
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 2.3e-29 132.9 147 43.5
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 2.3e-29 132.9 133 49.6
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 4.0e-29 132.1 157 42.7
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 8.8e-29 131.0 142 49.3
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 2.0e-28 129.8 123 52.0
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 1.3e-27 127.1 135 44.4
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 4.8e-27 125.2 132 44.7
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 6.3e-27 124.8 115 47.8
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 1.1e-26 124.0 138 43.5
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.4e-26 123.6 127 47.2
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 1.4e-26 123.6 124 48.4
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.8e-26 123.2 127 46.5
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 2.4e-26 122.9 96 56.2
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 3.1e-26 122.5 125 44.8
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 3.1e-26 122.5 129 45.7
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 4.1e-26 122.1 126 49.2
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 7.0e-26 121.3 136 46.3
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 7.0e-26 121.3 142 45.8
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 7.0e-26 121.3 128 46.1
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 7.0e-26 121.3 98 52.0
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 7.0e-26 121.3 157 40.1
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 9.1e-26 120.9 134 44.8
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 9.1e-26 120.9 134 44.8
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 1.2e-25 120.6 110 50.0
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 1.2e-25 120.6 133 44.4
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 1.6e-25 120.2 128 48.4
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 1.6e-25 120.2 118 49.2
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 2.0e-25 119.8 125 49.6
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.0e-25 119.8 125 46.4
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 2.0e-25 119.8 128 47.7
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 2.7e-25 119.4 127 45.7
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 2.7e-25 119.4 127 45.7
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 2.7e-25 119.4 127 45.7
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.7e-25 119.4 124 48.4
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 3.5e-25 119.0 123 48.0
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 3.5e-25 119.0 110 50.9
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 3.5e-25 119.0 110 50.9
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 3.5e-25 119.0 118 44.9
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 3.5e-25 119.0 166 38.0
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 4.5e-25 118.6 127 46.5
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 4.5e-25 118.6 102 48.0
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 4.5e-25 118.6 120 48.3
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 4.5e-25 118.6 118 44.9
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 4.5e-25 118.6 110 48.2
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 4.5e-25 118.6 129 41.1
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 5.9e-25 118.2 115 48.7
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 5.9e-25 118.2 140 42.1
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 5.9e-25 118.2 119 47.9
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 7.7e-25 117.9 132 43.9
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.0e-24 117.5 123 48.8
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 1.3e-24 117.1 126 45.2
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.3e-24 117.1 91 57.1
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.3e-24 117.1 119 46.2
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 2.2e-24 116.3 112 50.0
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 2.2e-24 116.3 121 45.5
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.2e-24 116.3 102 48.0
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 2.2e-24 116.3 129 43.4
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 2.9e-24 115.9 141 41.1
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.9e-24 115.9 105 47.6
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 2.9e-24 115.9 101 48.5
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 2.9e-24 115.9 101 48.5
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 5.0e-24 115.2 158 37.3
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 5.0e-24 115.2 134 41.8
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 6.5e-24 114.8 88 52.3
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 6.5e-24 114.8 102 52.9
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 8.5e-24 114.4 138 42.0
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 8.5e-24 114.4 154 41.6
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 8.5e-24 114.4 126 42.1
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.9e-23 113.2 118 42.4
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.9e-23 113.2 106 50.0
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 2.5e-23 112.8 121 46.3
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 2.5e-23 112.8 116 44.8
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 2.5e-23 112.8 119 44.5
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 3.2e-23 112.5 116 43.1
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 3.2e-23 112.5 125 48.8
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 3.2e-23 112.5 86 57.0
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 4.2e-23 112.1 99 51.5
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 4.2e-23 112.1 127 44.9
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 5.5e-23 111.7 102 47.1
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 5.5e-23 111.7 96 49.0
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 5.5e-23 111.7 115 47.0
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 5.5e-23 111.7 127 44.9
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 5.5e-23 111.7 127 44.9
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 7.2e-23 111.3 150 37.3
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.2e-22 110.5 135 43.7
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.2e-22 110.5 137 39.4
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 1.6e-22 110.2 95 51.6
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 1.6e-22 110.2 97 49.5
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 2.1e-22 109.8 98 51.0
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 6.1e-22 108.2 109 47.7
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 6.1e-22 108.2 110 45.5
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 6.1e-22 108.2 79 57.0
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 8.0e-22 107.8 126 42.9
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 1.0e-21 107.5 112 46.4
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.4e-21 107.1 96 46.9
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.8e-21 106.7 123 41.5
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 4.0e-21 105.5 125 42.4
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 6.8e-21 104.8 120 40.8
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 8.8e-21 104.4 88 53.4
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 2.0e-20 103.2 96 45.8
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 2.0e-20 103.2 102 45.1
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 2.6e-20 102.8 127 43.3
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 3.4e-20 102.4 88 48.9
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 3.4e-20 102.4 138 35.5
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 4.4e-20 102.1 103 49.5
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 9.8e-20 100.9 124 41.9
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 9.8e-20 100.9 87 49.4
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 1.3e-19 100.5 88 51.1
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 1.3e-19 100.5 88 51.1
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.7e-19 100.1 101 45.5
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 2.2e-19 99.8 144 37.5
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 6.3e-19 98.2 130 40.8
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 6.3e-19 98.2 97 46.4
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 6.3e-19 98.2 136 37.5
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 8.3e-19 97.8 93 47.3
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.1e-18 97.4 97 48.5
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 2.4e-18 96.3 66 65.2
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 2.4e-18 96.3 97 47.4
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 4.1e-18 95.5 111 41.4
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 9.2e-18 94.4 97 42.3
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 9.2e-18 94.4 106 45.3
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.2e-17 94.0 136 36.8
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 1.2e-17 94.0 131 36.6
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 1.6e-17 93.6 134 37.3
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 2.0e-17 93.2 86 48.8
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 2.0e-17 93.2 131 36.6
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 2.0e-17 93.2 131 36.6
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 2.0e-17 93.2 131 36.6
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 2.0e-17 93.2 131 36.6
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 2.7e-17 92.8 129 35.7
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 2.3e-16 89.7 104 45.2
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 3.8e-16 89.0 123 39.0
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 5.0e-16 88.6 88 47.7
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 5.0e-16 88.6 90 48.9
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 8.6e-16 87.8 156 37.2
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 3.3e-15 85.9 71 49.3
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 7.3e-15 84.7 114 43.0
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 6.1e-14 81.6 111 39.6
CANSAT54G2708 Cannabis sativa HOM05D002444 ORTHO05D004748 1.4e-13 80.5 157 35.0
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.3e-13 79.7 111 37.8
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 6.4e-11 71.6 57 52.6
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 1.8e-10 70.1 102 44.1
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 1.8e-10 70.1 102 44.1
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 7.0e-10 68.2 44 63.6
AagrBONN_evm.TU.Sc2ySwM_344.1126 Anthoceros agrestis HOM05D002444 ORTHO05D004748 3.5e-09 65.9 95 38.9
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 4.3e-07 58.9 90 33.3
COL.COLO4_19482 Corchorus olitorius HOM05D008739 ORTHO05D010871 5.6e-07 58.5 90 34.4
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 3.6e-06 55.8 49 53.1
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 6.2e-06 55.1 98 32.7


User provided reference genes

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