Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.7e-191 671.4 346 100.0
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 1.1e-182 643.3 347 97.1
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.3e-180 636.3 354 95.2
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.0e-180 635.2 354 95.2
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.3e-179 631.3 347 95.1
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.1e-178 629.0 347 95.1
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-173 612.8 367 89.4
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 2.1e-173 612.5 345 92.8
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 2.0e-152 542.7 350 81.4
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 6.2e-146 521.2 353 78.8
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 6.5e-135 484.6 350 74.3
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 1.9e-134 483.0 353 73.4
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 1.2e-133 480.3 348 72.1
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 1.6e-133 479.9 354 72.9
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 1.4e-132 476.9 344 71.2
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 6.7e-132 474.6 331 73.4
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 6.7e-132 474.6 331 73.4
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 4.3e-131 471.9 354 70.3
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 1.3e-130 470.3 336 72.0
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 1.7e-130 469.9 359 70.2
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 4.8e-130 468.4 359 70.8
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 1.2e-128 463.8 299 76.3
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 2.6e-128 462.6 320 72.2
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 7.7e-128 461.1 352 69.3
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 1.0e-127 460.7 347 69.2
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 5.0e-127 458.4 347 68.9
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 8.5e-127 457.6 352 69.3
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 1.1e-126 457.2 316 73.7
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 1.9e-126 456.4 357 68.6
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 3.2e-126 455.7 352 69.6
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 7.2e-126 454.5 351 69.2
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 7.2e-126 454.5 339 70.5
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 1.0e-124 450.7 344 69.2
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 1.0e-124 450.7 350 67.7
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 1.4e-124 450.3 323 70.0
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 2.3e-124 449.5 300 73.7
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.3e-124 449.5 353 68.0
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 2.3e-124 449.5 351 68.9
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 3.0e-124 449.1 272 80.1
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 5.1e-124 448.4 351 68.4
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 2.0e-123 446.4 351 67.2
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 2.0e-123 446.4 315 72.1
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 2.6e-123 446.0 349 67.0
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 3.3e-123 445.7 335 68.1
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 3.3e-123 445.7 339 68.4
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 5.7e-123 444.9 341 68.3
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 7.4e-123 444.5 347 68.0
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 7.4e-123 444.5 347 68.0
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 2.2e-122 443.0 387 63.0
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 2.8e-122 442.6 347 68.9
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 3.7e-122 442.2 350 69.4
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 8.2e-122 441.0 359 66.3
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 8.2e-122 441.0 348 67.0
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 1.4e-121 440.3 348 67.0
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 1.4e-121 440.3 294 75.5
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 1.8e-121 439.9 352 67.0
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 2.4e-121 439.5 347 67.7
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 2.4e-121 439.5 347 67.7
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 3.1e-121 439.1 329 70.5
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 4.1e-121 438.7 332 71.4
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 4.1e-121 438.7 348 67.2
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 9.1e-121 437.6 344 67.7
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 8.5e-119 431.0 333 67.9
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 1.1e-118 430.6 321 69.8
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 1.2e-117 427.2 349 67.6
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 1.6e-117 426.8 292 73.3
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 3.6e-117 425.6 353 66.6
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 8.0e-117 424.5 299 70.9
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 1.0e-116 424.1 342 67.0
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 1.0e-116 424.1 349 66.8
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 1.8e-116 423.3 347 66.6
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 1.8e-116 423.3 332 68.1
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 1.5e-115 420.2 346 65.6
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 2.0e-115 419.9 255 80.0
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 4.4e-115 418.7 350 66.3
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 4.4e-115 418.7 309 70.6
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 1.1e-113 414.1 349 65.0
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 1.8e-113 413.3 338 66.6
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 3.1e-113 412.5 288 70.1
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 3.1e-113 412.5 298 71.1
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 3.1e-113 412.5 350 66.9
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 4.1e-113 412.1 349 63.3
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 9.1e-113 411.0 309 69.6
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 2.0e-112 409.8 338 66.9
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 7.7e-112 407.9 349 64.2
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 1.7e-111 406.8 346 63.9
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 5.5e-110 401.7 295 71.2
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 2.8e-106 389.4 229 80.3
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 2.0e-104 383.3 310 66.1
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 3.5e-104 382.5 307 64.2
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 4.2e-102 375.6 302 67.2
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 9.4e-102 374.4 355 60.0
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 1.6e-93 347.1 347 54.5
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 2.9e-87 326.2 320 57.8
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 4.4e-83 312.4 354 54.2
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 5.8e-83 312.0 255 62.4
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 2.7e-80 303.1 292 52.7
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 5.6e-78 295.4 163 86.5
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 2.1e-77 293.5 364 47.3
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 2.2e-74 283.5 173 75.7
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 3.9e-71 272.7 356 46.6
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.5e-67 260.8 187 65.2
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 4.1e-65 252.7 144 79.9
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 2.8e-61 240.0 224 50.0
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.3e-55 221.1 132 81.8
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 8.7e-55 218.4 126 83.3
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 8.7e-55 218.4 126 83.3
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.9e-54 217.2 172 66.9
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 9.9e-51 204.9 132 75.8
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 1.0e-39 168.3 369 32.5
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 2.1e-37 160.6 347 34.9
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 1.2e-32 144.8 238 37.4
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 2.1e-32 144.1 107 69.2
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 1.8e-31 141.0 150 59.3
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 9.3e-25 118.6 201 40.8
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 2.3e-23 114.0 83 62.7
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 1.3e-21 108.2 94 59.6
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 8.2e-21 105.5 53 88.7
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 4.6e-16 89.7 65 63.1
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 1.3e-13 81.6 126 40.5
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 6.3e-13 79.3 138 44.2
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 3.1e-12 77.0 126 38.9
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 7.7e-11 72.4 38 84.2
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 4.7e-08 63.2 77 46.8
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 4.7e-08 63.2 77 46.8
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 9.7e-06 55.5 255 23.9


User provided reference genes

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