Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.2e-140 503.4 306 100.0
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 8.0e-129 464.2 306 94.1
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.8e-128 463.0 306 93.8
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 9.8e-111 404.1 306 84.0
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 4.3e-106 388.7 308 82.5
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.6e-106 388.3 306 83.3
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.8e-104 383.3 304 76.3
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.3e-102 377.1 306 75.2
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 1.1e-101 374.0 309 68.9
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 5.4e-101 371.7 306 70.9
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 2.7e-100 369.4 320 69.7
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 6.0e-100 368.2 307 71.7
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 1.3e-99 367.1 306 69.9
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 3.0e-99 365.9 310 70.6
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 6.6e-99 364.8 306 71.2
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 1.6e-97 360.1 305 71.8
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 6.2e-97 358.2 306 70.3
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 1.4e-96 357.1 309 68.9
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 4.0e-96 355.5 305 64.6
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 5.2e-96 355.1 305 70.2
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 6.8e-96 354.8 309 71.8
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 9.9e-95 350.9 310 68.7
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 3.8e-94 349.0 307 67.8
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 8.4e-94 347.8 312 65.1
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.9e-93 346.7 305 67.5
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 2.4e-93 346.3 309 64.4
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.2e-93 345.9 320 62.8
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 4.2e-93 345.5 305 64.6
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 7.1e-93 344.7 309 62.1
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 3.5e-92 342.4 279 71.7
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 7.8e-92 341.3 309 62.8
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 5.1e-91 338.6 306 66.0
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 6.6e-91 338.2 274 66.4
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 1.1e-90 337.4 310 68.4
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.5e-90 337.0 306 68.0
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 1.9e-90 336.7 306 65.0
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.9e-90 336.7 306 62.1
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 2.5e-90 336.3 308 63.3
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 3.3e-90 335.9 309 65.7
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 9.6e-90 334.3 306 63.7
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 1.2e-89 334.0 308 63.0
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 2.1e-89 333.2 306 66.7
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 1.8e-88 330.1 309 64.4
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 3.1e-88 329.3 309 62.8
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.2e-87 327.4 305 65.6
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 2.6e-87 326.2 307 67.4
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 4.4e-87 325.5 297 71.4
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 5.8e-87 325.1 306 64.1
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 7.6e-87 324.7 306 64.1
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.2e-86 323.2 283 71.0
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 2.9e-86 322.8 302 64.2
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.9e-86 322.8 307 64.8
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 2.9e-86 322.8 301 65.8
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 4.9e-86 322.0 305 58.7
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.4e-85 319.7 305 58.0
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 4.2e-85 318.9 305 58.0
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 2.7e-84 316.2 344 60.5
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 1.3e-83 313.9 304 72.7
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 3.0e-83 312.8 322 60.2
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 1.6e-81 307.0 307 62.9
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 2.1e-81 306.6 288 62.5
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 4.8e-81 305.4 305 63.9
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 4.8e-81 305.4 301 62.8
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 2.2e-78 296.6 252 68.7
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 3.8e-78 295.8 306 61.1
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 4.9e-78 295.4 315 62.9
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 3.2e-77 292.7 290 58.6
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 4.2e-77 292.4 200 77.5
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 2.1e-76 290.0 347 60.8
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 6.0e-76 288.5 306 68.3
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 7.9e-76 288.1 298 69.8
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 1.0e-75 287.7 324 58.3
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 3.0e-75 286.2 306 68.0
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.9e-74 283.5 309 61.5
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 3.3e-74 282.7 302 60.9
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 3.3e-74 282.7 305 65.6
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 7.4e-74 281.6 306 63.4
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 7.4e-74 281.6 307 59.6
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 8.1e-73 278.1 337 57.0
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 1.4e-72 277.3 304 56.2
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 4.0e-72 275.8 224 69.6
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 7.6e-71 271.6 343 56.0
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.0e-70 271.2 336 57.7
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 1.1e-69 267.7 299 58.5
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.1e-69 267.7 278 63.7
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 2.1e-68 263.5 308 58.8
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 3.5e-68 262.7 305 62.6
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 3.5e-68 262.7 305 62.6
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 4.6e-68 262.3 313 59.1
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 7.9e-68 261.5 315 58.7
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 3.3e-66 256.1 307 58.3
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 8.2e-65 251.5 309 57.6
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 8.2e-65 251.5 309 57.6
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 8.2e-65 251.5 309 57.6
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.4e-64 250.0 309 52.4
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.4e-64 250.0 309 52.4
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 3.1e-64 249.6 311 61.4
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.7e-62 243.8 308 60.1
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 8.4e-62 241.5 308 58.4
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 1.1e-61 241.1 275 59.3
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 1.3e-59 234.2 309 57.6
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 8.7e-59 231.5 325 53.5
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 1.5e-58 230.7 310 59.0
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 2.5e-58 229.9 307 55.7
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.8e-57 226.5 189 58.7
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 1.4e-56 224.2 272 49.3
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.2e-55 221.1 300 55.3
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 2.0e-55 220.3 367 48.2
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 2.1e-52 210.3 276 57.6
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.7e-46 190.7 189 54.5
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 1.0e-43 181.4 228 50.0
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 2.0e-42 177.2 153 54.9
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.5e-39 167.5 158 61.4
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 8.5e-38 161.8 164 73.2
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.2e-36 157.9 137 58.4
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 4.8e-33 146.0 98 69.4
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 3.2e-29 133.3 105 66.7
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.7e-28 129.4 177 44.1
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 3.4e-26 123.2 130 64.6
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 1.1e-24 118.2 135 63.0
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 1.8e-24 117.5 161 46.0
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 3.4e-18 96.7 89 58.4
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 5.7e-18 95.9 48 85.4
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 2.4e-16 90.5 63 69.8
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 1.6e-15 87.8 76 59.2
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 2.0e-15 87.4 114 52.6
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 3.5e-15 86.7 74 59.5
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 3.5e-15 86.7 74 59.5
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 5.5e-13 79.3 48 77.1
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 2.8e-12 77.0 56 76.8
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.2e-10 71.6 95 63.2
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 1.6e-07 61.2 70 40.0
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 4.6e-07 59.7 29 86.2
CDE12G0199 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 1.0e-06 58.5 71 38.0
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 1.0e-06 58.5 98 34.7
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 1.3e-06 58.2 69 46.4
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 2.3e-06 57.4 54 50.0
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 2.3e-06 57.4 54 50.0
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 3.9e-06 56.6 63 49.2
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 3.9e-06 56.6 71 35.2
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 5.0e-06 56.2 124 29.0
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 6.6e-06 55.8 54 46.3
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 6.6e-06 55.8 59 50.8
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 6.6e-06 55.8 46 58.7
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 6.6e-06 55.8 46 58.7
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 8.6e-06 55.5 50 54.0
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 8.6e-06 55.5 82 39.0
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 8.6e-06 55.5 66 37.9
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 8.6e-06 55.5 46 54.3


User provided reference genes

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