Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 7.3e-142 507.3 271 100.0
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.1e-140 503.4 271 99.3
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 6.8e-140 500.7 271 96.7
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 1.8e-119 433.0 273 87.9
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 2.5e-105 386.0 209 99.0
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 5.9e-99 364.8 295 70.2
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 2.7e-96 355.9 287 71.1
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 6.1e-96 354.8 247 77.7
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.0e-95 354.0 278 71.9
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 1.0e-95 354.0 278 71.9
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 1.5e-94 350.1 191 92.7
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 1.5e-94 350.1 275 70.2
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 4.3e-94 348.6 280 70.0
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 9.7e-94 347.4 250 76.0
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 2.8e-93 345.9 262 73.3
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 3.7e-93 345.5 280 68.9
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 6.3e-93 344.7 279 69.2
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 1.1e-92 344.0 206 85.9
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 6.9e-92 341.3 280 68.6
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 6.9e-92 341.3 291 68.4
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 6.9e-92 341.3 231 77.9
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 2.0e-91 339.7 231 77.1
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 4.5e-91 338.6 251 74.5
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 5.9e-91 338.2 232 78.4
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 7.7e-91 337.8 242 74.8
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 1.0e-90 337.4 274 70.4
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 1.3e-90 337.0 269 71.0
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 1.7e-90 336.7 262 71.0
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 3.8e-90 335.5 245 73.9
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 5.0e-90 335.1 284 66.9
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 5.0e-90 335.1 284 67.6
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 1.4e-89 333.6 241 74.3
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 1.9e-89 333.2 248 75.0
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 3.2e-89 332.4 241 73.9
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 5.5e-89 331.6 243 75.3
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 5.5e-89 331.6 249 73.1
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 2.1e-88 329.7 200 86.0
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 4.7e-88 328.6 248 71.8
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 4.7e-88 328.6 243 74.9
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 7.9e-88 327.8 208 80.8
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 7.9e-88 327.8 275 69.8
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 1.4e-87 327.0 252 71.4
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 3.0e-87 325.9 276 68.1
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 5.1e-87 325.1 251 70.5
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 5.1e-87 325.1 206 82.5
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 6.7e-87 324.7 184 88.0
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 8.8e-87 324.3 277 66.4
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 8.8e-87 324.3 277 66.8
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 1.1e-86 323.9 246 71.1
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 1.1e-86 323.9 250 71.6
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 3.3e-86 322.4 228 76.3
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 3.3e-86 322.4 254 72.8
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 5.7e-86 321.6 203 83.7
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 1.7e-85 320.1 205 80.0
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 1.7e-85 320.1 202 81.7
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 2.2e-85 319.7 253 71.1
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 2.8e-85 319.3 195 82.6
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 2.8e-85 319.3 273 66.3
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 2.8e-85 319.3 274 67.2
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 3.7e-85 318.9 187 88.8
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 3.7e-85 318.9 267 66.7
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 6.3e-85 318.2 198 83.8
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.4e-84 317.0 248 71.4
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.4e-84 317.0 247 71.3
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 1.4e-84 317.0 212 76.4
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 1.8e-84 316.6 203 83.7
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 2.4e-84 316.2 263 68.1
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 2.4e-84 316.2 187 85.0
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 2.4e-84 316.2 205 81.5
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 3.1e-84 315.8 272 66.9
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 3.1e-84 315.8 273 65.2
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 5.3e-84 315.1 197 82.7
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 7.0e-84 314.7 260 66.2
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 1.2e-83 313.9 243 70.8
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 1.2e-83 313.9 276 65.2
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 2.0e-83 313.2 274 66.4
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 2.0e-83 313.2 259 67.6
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 4.5e-83 312.0 256 67.6
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 4.5e-83 312.0 249 69.9
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 5.9e-83 311.6 189 84.7
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 7.7e-83 311.2 256 67.6
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 1.0e-82 310.8 263 66.9
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 2.2e-82 309.7 261 65.5
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 2.2e-82 309.7 266 67.7
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 2.9e-82 309.3 267 65.9
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 3.8e-82 308.9 251 69.7
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 3.8e-82 308.9 256 66.8
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 3.8e-82 308.9 264 65.9
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 3.8e-82 308.9 264 65.9
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 6.5e-82 308.1 274 63.1
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 6.5e-82 308.1 195 82.6
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 6.5e-82 308.1 242 70.2
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 3.6e-80 302.4 186 84.9
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 3.9e-79 298.9 273 61.5
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 3.9e-79 298.9 283 61.5
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 1.5e-78 297.0 280 63.2
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 1.5e-78 297.0 185 81.1
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 4.4e-78 295.4 189 77.8
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 7.4e-78 294.7 185 80.0
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 3.2e-73 279.3 238 66.8
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 6.7e-71 271.6 209 72.2
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 3.3e-70 269.2 209 70.3
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 4.4e-70 268.9 194 69.1
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 7.7e-67 258.1 226 66.8
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 2.2e-66 256.5 196 64.8
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 1.1e-65 254.2 209 62.7
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.2e-62 244.2 141 93.6
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 7.0e-60 235.0 198 60.6
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 9.1e-60 234.6 249 59.4
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 8.9e-55 218.0 140 80.0
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 5.7e-54 215.3 211 59.2
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 4.7e-48 195.7 197 50.8
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 2.6e-46 189.9 110 84.5
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 7.5e-46 188.3 199 50.8
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 8.3e-45 184.9 202 54.5
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 1.1e-44 184.5 137 68.6
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.7e-42 177.2 110 74.5
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 4.6e-35 152.5 191 43.5
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.2e-24 117.9 88 71.6
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 1.6e-16 90.9 71 69.0
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 3.6e-16 89.7 50 84.0
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 1.4e-12 77.8 93 53.8
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 2.8e-08 63.5 44 75.0
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 2.4e-07 60.5 44 61.4
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 1.5e-06 57.8 65 53.8


User provided reference genes

Program Settings