Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.7e-57 225.7 110 100.0
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.7e-44 182.6 89 98.9
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.7e-44 182.6 89 98.9
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.7e-44 182.6 89 98.9
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.7e-44 181.4 89 97.8
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 3.6e-39 164.9 89 89.9
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 4.7e-31 137.9 91 74.7
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 6.2e-31 137.5 91 72.5
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 5.2e-30 134.4 70 92.9
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 2.0e-29 132.5 91 69.2
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 7.1e-27 124.0 94 67.0
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 1.2e-26 123.2 97 66.0
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 1.0e-25 120.2 97 66.0
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.5e-24 116.3 100 64.0
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.9e-24 115.9 95 64.2
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 3.6e-23 111.7 97 61.9
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 6.2e-23 110.9 97 64.9
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.1e-22 110.2 97 62.9
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 2.4e-22 109.0 97 63.9
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 3.1e-22 108.6 97 62.9
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 5.2e-22 107.8 96 59.4
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 5.2e-22 107.8 95 64.2
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 6.8e-22 107.5 97 61.9
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.5e-21 106.3 96 60.4
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 9.9e-21 103.6 97 59.8
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.7e-20 102.8 92 58.7
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.8e-20 101.7 97 55.7
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.9e-20 101.3 98 60.2
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 4.9e-20 101.3 98 60.2
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 6.4e-20 100.9 99 58.6
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 1.1e-19 100.1 92 57.6
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.4e-19 99.8 98 59.2
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 2.4e-19 99.0 93 55.9
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 3.2e-19 98.6 72 68.1
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 3.2e-19 98.6 76 65.8
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 4.1e-19 98.2 89 58.4
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 9.2e-19 97.1 91 57.1
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 9.2e-19 97.1 90 57.8
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 1.6e-18 96.3 92 55.4
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.6e-18 96.3 98 55.1
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.1e-18 95.9 90 60.0
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 2.7e-18 95.5 97 53.6
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 2.7e-18 95.5 97 53.6
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 2.7e-18 95.5 90 60.0
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.7e-18 95.5 90 60.0
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 3.5e-18 95.1 82 62.2
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.6e-18 94.7 89 56.2
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 1.0e-17 93.6 95 55.8
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.3e-17 93.2 95 54.7
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.7e-17 92.8 97 53.6
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 1.7e-17 92.8 93 60.2
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.3e-17 92.4 89 55.1
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 3.0e-17 92.0 92 55.4
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.1e-16 90.1 89 53.9
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.5e-16 89.7 89 53.9
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.5e-16 89.7 89 53.9
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.5e-16 89.7 93 54.8
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.9e-16 89.4 96 53.1
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 3.3e-16 88.6 90 55.6
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 4.3e-16 88.2 72 63.9
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 4.3e-16 88.2 89 52.8
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 5.6e-16 87.8 98 53.1
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 5.6e-16 87.8 92 56.5
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 7.3e-16 87.4 92 53.3
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 7.3e-16 87.4 92 53.3
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 7.3e-16 87.4 98 51.0
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 9.6e-16 87.0 96 49.0
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 9.6e-16 87.0 91 56.0
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 9.6e-16 87.0 96 55.2
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.1e-15 85.9 90 54.4
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 2.1e-15 85.9 89 51.7
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.1e-15 85.9 96 56.2
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.8e-15 85.5 92 52.2
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 6.2e-15 84.3 91 52.7
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-14 83.6 48 85.4
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 3.1e-14 82.0 95 50.5
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 5.2e-14 81.3 91 50.5
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 5.2e-14 81.3 91 53.8
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 9.0e-14 80.5 80 53.8
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 1.2e-13 80.1 90 50.0
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.2e-13 80.1 93 51.6
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 1.2e-13 80.1 93 51.6
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.2e-13 80.1 80 53.8
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 2.0e-13 79.3 93 51.6
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.4e-13 78.6 78 53.8
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 5.8e-13 77.8 93 50.5
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 7.6e-13 77.4 93 50.5
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 7.6e-13 77.4 92 51.1
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 7.6e-13 77.4 94 53.2
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 9.9e-13 77.0 89 50.6
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.3e-12 76.6 92 53.3
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 4.9e-12 74.7 96 50.0
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 6.4e-12 74.3 96 44.8
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 6.4e-12 74.3 98 46.9
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.4e-11 73.2 89 49.4
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 2.4e-11 72.4 91 51.6
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 4.2e-11 71.6 90 53.3
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 4.2e-11 71.6 90 53.3
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 7.1e-11 70.9 64 57.8
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 9.3e-11 70.5 89 51.7
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.2e-10 70.1 65 58.5
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.2e-10 70.1 95 48.4
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.6e-10 69.7 49 71.4
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 1.6e-10 69.7 93 48.4
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.5e-10 68.6 61 62.3
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 4.6e-10 68.2 65 58.5
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 6.0e-10 67.8 49 69.4
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 6.0e-10 67.8 49 69.4
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 6.0e-10 67.8 91 47.3
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 7.8e-10 67.4 92 44.6
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.0e-09 67.0 65 56.9
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.3e-09 65.9 79 51.9
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 3.9e-09 65.1 65 56.9
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 6.6e-09 64.3 49 69.4
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.1e-08 63.5 57 63.2
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.5e-08 63.2 70 50.0
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 2.5e-08 62.4 98 43.9
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.5e-08 62.4 57 61.4
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 7.3e-08 60.8 88 45.5
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.6e-07 59.7 63 54.0
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.8e-07 58.9 57 59.6
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 4.8e-07 58.2 49 65.3
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.8e-06 56.2 100 43.0
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.8e-06 56.2 48 62.5
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 9.0e-06 53.9 91 41.8
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 9.0e-06 53.9 35 74.3


User provided reference genes

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