Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2788.4 1408 100.0
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2715.3 1408 97.7
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2711.0 1408 97.5
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2711.0 1408 97.5
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2707.2 1408 97.4
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2659.4 1408 95.2
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2594.3 1408 92.4
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2572.7 1408 91.5
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2571.2 1408 91.4
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2513.8 1409 88.6
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2511.1 1409 88.9
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2501.9 1410 88.8
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2499.2 1412 87.8
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2499.2 1410 88.1
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2498.0 1410 88.2
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2497.6 1409 87.9
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2497.2 1410 87.9
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2496.1 1409 87.5
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2494.5 1409 87.9
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2493.0 1409 88.1
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2491.1 1412 87.5
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2489.1 1410 87.5
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2488.0 1410 88.0
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2483.8 1410 87.3
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2483.4 1425 87.6
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2481.4 1411 87.3
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2481.1 1412 87.5
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2480.3 1409 88.0
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2477.2 1409 87.7
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1410 87.3
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1413 87.5
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2474.5 1411 87.4
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2474.1 1410 87.4
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2473.7 1410 86.8
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2472.6 1411 87.3
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2472.2 1415 87.5
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2471.4 1415 87.4
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2471.0 1411 87.6
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2471.0 1409 87.2
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2469.9 1411 87.4
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2469.5 1410 87.2
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2466.8 1410 86.5
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2466.8 1409 86.9
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2466.0 1409 87.2
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2465.6 1410 87.0
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2465.6 1412 87.0
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2464.1 1409 87.0
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2462.6 1409 87.0
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2462.2 1411 87.0
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2462.2 1409 86.9
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2459.1 1410 86.7
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2458.3 1410 86.7
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2457.9 1412 86.7
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2457.6 1410 87.0
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2456.0 1410 86.7
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2455.6 1410 86.9
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2454.9 1410 86.7
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2453.7 1411 86.5
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2453.3 1410 86.6
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2450.6 1413 86.1
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2450.6 1411 86.1
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2448.7 1425 85.8
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2441.4 1411 85.9
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2436.8 1409 86.1
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2433.7 1409 86.6
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2430.6 1411 85.8
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2430.6 1411 85.8
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2424.0 1412 85.6
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2422.5 1473 82.5
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2421.0 1410 85.5
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2418.7 1410 85.2
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2417.9 1411 85.5
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2416.3 1409 85.9
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2416.3 1410 85.2
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2410.9 1410 86.0
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2409.4 1362 88.0
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2407.5 1420 84.0
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2395.5 1411 85.3
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2394.0 1410 85.3
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2392.1 1411 84.6
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2388.6 1411 84.5
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2388.2 1382 86.0
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2386.3 1413 84.9
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2384.0 1411 84.6
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2384.0 1411 84.3
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2374.7 1411 84.0
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2374.7 1411 84.0
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2368.6 1411 83.8
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2368.6 1411 83.8
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2367.0 1411 83.8
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2365.9 1411 83.8
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2329.7 1412 82.1
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2316.2 1409 82.7
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2308.9 1410 82.1
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2306.6 1410 82.1
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2288.5 1381 81.8
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2283.4 1262 89.5
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2276.5 1435 80.6
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2268.8 1257 89.3
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2266.1 1405 79.6
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2230.3 1273 86.7
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2224.1 1361 82.8
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2170.6 1360 78.5
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2169.4 1370 78.0
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2154.0 1358 77.5
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2145.5 1372 77.3
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2145.5 1372 77.3
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2141.3 1382 75.9
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1974.5 1120 87.4
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1958.0 1108 87.6
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1942.2 1407 72.9
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1887.1 1427 71.1
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1857.4 1359 67.5
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1832.4 1363 66.8
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1676.4 1409 64.2
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1643.2 940 86.4
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1620.5 914 88.5
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1466.4 836 87.2
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1459.5 835 86.7
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1176.0 675 87.6
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1114.4 669 85.2
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1112.4 717 78.7
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 4.3e-294 1015.4 571 85.6
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 2.3e-263 913.3 588 78.7
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 2.8e-261 906.4 1199 43.8
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 8.2e-237 825.1 470 86.2
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.8e-236 823.9 470 86.0
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 2.5e-233 813.5 471 86.0
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 5.2e-215 752.7 471 80.9
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.7e-205 721.1 398 87.4
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 5.8e-174 616.3 1400 31.9
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 5.8e-158 563.1 1498 29.7
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 2.2e-109 401.7 1309 28.4
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 4.7e-83 314.3 202 79.7
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 6.2e-67 260.8 147 87.1
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.2e-57 229.9 123 89.4
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 2.6e-49 202.2 107 95.3
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 1.3e-37 163.3 174 53.4
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 7.9e-30 137.5 139 50.4
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 2.4e-26 125.9 98 67.3
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 6.9e-26 124.4 97 67.0
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 2.0e-20 106.3 61 85.2


User provided reference genes

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