Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1489.2 782 100.0
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1471.8 782 98.8
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1462.2 796 97.1
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1459.5 797 95.9
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1439.9 796 95.6
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1412.9 789 94.8
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1337.0 794 88.8
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1325.8 794 87.8
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1312.4 789 87.1
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1208.7 798 80.1
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1189.5 787 78.7
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1183.3 794 78.3
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1180.2 792 77.8
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1176.0 778 80.1
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1176.0 789 77.8
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1174.8 792 77.1
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1174.5 810 77.2
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1164.1 811 75.6
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1163.3 802 76.9
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1161.0 789 77.9
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1157.5 791 78.5
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1157.1 800 76.4
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1154.8 789 76.7
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1151.7 808 76.6
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1147.5 788 76.1
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1146.7 787 76.1
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1145.2 863 72.5
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1142.9 801 76.2
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1139.8 780 75.9
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1137.5 799 75.2
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1137.5 785 75.0
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1137.1 787 75.6
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1136.3 800 76.0
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1136.3 805 74.9
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1133.6 780 75.0
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1131.3 783 75.7
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1128.6 798 75.2
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1127.5 791 75.0
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1125.5 789 75.0
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1124.8 756 78.6
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1124.8 789 74.9
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1123.2 838 71.6
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1117.4 786 75.6
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1117.1 800 74.0
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1115.5 789 74.5
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1112.4 800 73.8
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1111.3 844 71.8
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1107.4 787 74.1
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1102.0 787 74.6
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1095.5 792 72.5
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1095.5 792 72.5
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1094.0 782 73.5
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1092.4 791 72.4
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1088.2 799 73.1
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1086.2 799 72.3
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1085.9 782 73.0
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1080.9 895 67.5
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1080.9 783 72.7
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1080.5 800 71.5
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1078.9 802 72.7
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1077.4 789 71.5
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1075.8 816 70.0
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 8.0e-311 1070.1 792 71.1
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.8e-310 1068.9 789 71.7
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 1.5e-309 1065.8 779 72.7
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.6e-309 1065.1 800 70.1
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 3.4e-309 1064.7 777 72.2
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 3.4e-309 1064.7 777 72.2
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 3.4e-309 1064.7 791 71.4
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 5.8e-309 1063.9 786 73.2
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 3.8e-308 1061.2 787 71.0
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-307 1059.7 778 71.7
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 3.2e-307 1058.1 778 71.6
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 3.2e-307 1058.1 778 71.6
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 3.2e-307 1058.1 805 69.9
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 4.2e-307 1057.7 788 71.2
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 6.0e-306 1053.9 801 69.3
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.3e-305 1052.7 802 69.5
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 1.8e-305 1052.4 803 70.4
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 2.2e-303 1045.4 788 69.8
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 2.4e-302 1042.0 759 73.3
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 3.1e-302 1041.6 791 69.9
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.2e-301 1039.6 805 68.9
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 6.5e-300 1033.9 790 70.3
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 1.1e-299 1033.1 805 68.4
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 4.2e-299 1031.2 779 69.4
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.2e-298 1029.6 779 69.6
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 3.6e-298 1028.1 798 68.8
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 6.7e-297 1023.8 643 82.1
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.2e-292 1008.8 643 81.3
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 8.5e-292 1006.9 791 69.9
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 4.2e-291 1004.6 643 81.2
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.0e-289 1000.0 768 69.1
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 4.4e-288 994.6 786 67.7
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 2.2e-284 982.2 788 67.3
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.4e-281 973.0 774 67.8
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 3.9e-281 971.5 774 67.3
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 1.6e-277 959.5 793 65.6
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 4.5e-277 958.0 770 66.5
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 4.5e-277 958.0 799 65.6
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 2.2e-276 955.7 837 63.2
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 2.9e-276 955.3 774 67.2
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 7.2e-275 950.7 775 66.5
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 2.4e-270 935.6 800 61.5
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 5.2e-265 917.9 779 64.8
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 7.5e-264 914.1 776 65.2
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 2.7e-253 879.0 806 59.1
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.2e-250 870.2 788 58.0
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.3e-249 865.9 705 68.7
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 1.5e-248 863.2 809 58.1
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 7.8e-245 850.9 791 59.2
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 7.6e-224 781.2 640 67.2
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 5.3e-217 758.4 640 64.5
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.4e-208 729.2 797 50.3
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 2.5e-203 713.0 480 77.7
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.1e-190 671.0 844 47.0
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.1e-190 671.0 844 47.0
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.2e-181 641.0 870 43.7
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.6e-176 623.2 847 44.6
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.3e-172 610.1 612 56.4
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 3.1e-169 599.7 459 67.3
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 7.7e-168 595.1 646 51.9
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.7e-167 594.0 526 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 3.9e-164 582.8 827 42.6
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 3.7e-162 576.2 434 68.9
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 5.5e-158 562.4 587 55.4
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 5.6e-134 482.6 397 66.8
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 4.7e-117 426.4 592 47.8
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 2.4e-100 370.9 453 51.9
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 6.9e-84 316.2 212 79.2
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 8.7e-79 299.3 686 36.2
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 5.7e-78 296.6 771 32.2
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 5.8e-75 286.6 207 71.5
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 6.1e-72 276.6 197 72.1
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.0e-71 275.8 197 72.1
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.0e-71 275.8 197 72.1
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 3.7e-69 267.3 210 65.2
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.7e-66 258.5 236 61.4
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.1e-60 239.2 504 36.9
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 5.9e-59 233.4 121 88.4
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-56 224.9 465 38.1
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 3.0e-47 194.5 131 77.9
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 1.5e-46 192.2 787 27.4
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.5e-41 174.9 199 51.8
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.8e-38 162.9 83 81.9
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.8e-38 162.9 83 81.9
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.6e-35 155.6 89 77.5
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.0e-30 138.7 348 31.0
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 4.9e-29 134.0 142 50.0
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.7e-27 126.7 118 55.9
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 7.2e-25 120.2 89 61.8
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 8.0e-24 116.7 75 84.0
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 4.9e-21 107.5 74 70.3
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.2e-20 104.8 149 40.3
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 1.2e-19 102.8 69 66.7
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 1.7e-18 99.0 57 89.5
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.7e-18 99.0 107 50.5
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.0e-18 98.2 84 60.7
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.1e-16 92.0 133 44.4
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 2.3e-15 88.6 57 68.4
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 3.4e-14 84.7 78 57.7
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 8.3e-13 80.1 106 50.0
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 7.0e-12 77.0 77 54.5
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 3.5e-11 74.7 77 54.5
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 4.6e-11 74.3 52 78.8
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 8.6e-10 70.1 50 78.0
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 4.3e-09 67.8 50 74.0
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 5.6e-09 67.4 65 63.1
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 1.6e-08 65.9 76 51.3
Oeu049880.1 Olea europaea HOM05D000526 ORTHO05D000956 2.3e-07 62.0 74 51.4
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.3e-07 62.0 246 28.9
Lsat_1_v5_gn_6_82700 Lactuca sativa HOM05D003991 ORTHO05D232831 6.8e-07 60.5 68 48.5
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 1.5e-06 59.3 107 40.2


User provided reference genes

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