Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.4e-125 452.2 233 100.0
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 8.8e-120 433.7 233 95.3
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.8e-120 433.7 233 95.3
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.6e-119 432.2 233 94.8
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.1e-117 424.9 233 93.6
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 1.2e-97 360.1 229 83.4
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 8.3e-86 320.9 232 68.5
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 9.9e-79 297.4 223 67.3
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.0e-75 287.3 244 69.7
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 2.6e-71 272.7 227 62.1
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 4.4e-71 271.9 231 61.0
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.7e-70 270.0 237 59.5
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 8.4e-70 267.7 229 60.7
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.4e-69 266.9 231 60.6
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.2e-68 263.8 227 60.4
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 7.8e-68 261.2 227 60.8
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.0e-67 260.8 227 54.6
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.9e-67 258.8 227 61.7
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 3.9e-67 258.8 229 58.5
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 6.6e-67 258.1 232 57.8
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.5e-66 256.9 227 62.1
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.5e-66 256.1 227 61.2
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 2.5e-66 256.1 227 56.8
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 4.3e-66 255.4 227 59.9
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.3e-66 255.4 228 59.2
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 5.6e-66 255.0 223 55.6
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 1.6e-65 253.4 230 57.0
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 2.1e-65 253.1 227 55.5
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 2.1e-65 253.1 230 59.1
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 2.8e-65 252.7 223 54.7
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 2.8e-65 252.7 233 54.5
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 3.6e-65 252.3 227 58.1
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 6.2e-65 251.5 227 57.7
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 1.8e-64 250.0 228 60.5
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 3.1e-64 249.2 223 57.4
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 3.1e-64 249.2 223 55.6
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.1e-64 249.2 227 56.8
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 5.3e-64 248.4 227 57.7
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 6.9e-64 248.1 223 52.9
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 9.0e-64 247.7 227 57.3
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 9.0e-64 247.7 227 57.3
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 9.0e-64 247.7 227 53.3
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.2e-63 247.3 223 53.4
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.2e-63 247.3 223 53.4
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.5e-63 246.9 229 56.8
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 5.8e-63 245.0 223 53.4
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 7.6e-63 244.6 223 57.0
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 9.9e-63 244.2 229 58.1
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 9.9e-63 244.2 228 53.1
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.7e-62 243.4 223 56.5
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.7e-62 243.4 225 55.6
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 2.2e-62 243.0 223 52.5
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 2.2e-62 243.0 239 53.1
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 2.9e-62 242.7 223 51.6
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 2.9e-62 242.7 223 52.5
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.9e-62 242.7 227 53.7
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 3.8e-62 242.3 228 56.6
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 8.4e-62 241.1 227 55.9
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.9e-61 240.0 229 57.2
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 3.2e-61 239.2 228 50.4
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 3.2e-61 239.2 225 56.4
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 3.2e-61 239.2 229 57.2
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 3.2e-61 239.2 230 53.5
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 5.4e-61 238.4 225 54.2
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 7.1e-61 238.0 236 51.7
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 7.1e-61 238.0 227 54.2
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 7.1e-61 238.0 225 55.1
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.2e-60 237.3 227 52.9
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.2e-60 237.3 229 56.8
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 2.1e-60 236.5 223 55.2
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 2.1e-60 236.5 223 55.2
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 2.1e-60 236.5 230 52.6
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.7e-60 236.1 239 52.7
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 2.7e-60 236.1 227 53.7
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 3.5e-60 235.7 227 57.7
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 3.5e-60 235.7 227 53.7
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 3.5e-60 235.7 240 52.1
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 4.6e-60 235.3 225 56.0
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 7.9e-60 234.6 238 52.5
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.0e-59 234.2 227 55.9
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.0e-59 234.2 229 54.6
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 1.0e-59 234.2 235 53.2
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.0e-59 234.2 229 54.1
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.3e-59 233.8 224 57.1
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.8e-59 233.4 219 53.0
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 1.8e-59 233.4 227 56.4
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 2.3e-59 233.0 225 53.8
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.0e-59 232.6 228 55.3
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 3.9e-59 232.3 227 55.1
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.1e-59 231.9 225 52.4
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 6.7e-59 231.5 225 54.7
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.5e-58 230.3 247 49.8
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 1.5e-58 230.3 233 49.4
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 2.5e-58 229.6 228 53.5
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 7.4e-58 228.0 249 52.6
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.4e-58 228.0 225 51.6
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 7.4e-58 228.0 229 54.1
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 9.6e-58 227.6 227 51.5
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.3e-57 227.3 227 50.2
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.3e-57 227.3 172 63.4
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.6e-57 226.9 219 52.1
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.6e-57 226.9 227 55.5
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 2.1e-57 226.5 225 51.1
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.1e-57 226.5 232 50.4
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 2.8e-57 226.1 227 53.7
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 8.1e-57 224.6 227 55.1
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 8.1e-57 224.6 213 56.3
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 8.1e-57 224.6 225 52.9
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 3.1e-56 222.6 224 52.2
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 4.0e-56 222.2 223 52.9
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 5.3e-56 221.9 229 51.5
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 6.9e-56 221.5 228 52.6
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.5e-55 220.3 224 49.1
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.5e-55 220.3 236 50.4
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 5.8e-55 218.4 223 50.7
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 7.6e-55 218.0 239 49.4
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.8e-54 215.7 219 48.9
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 4.9e-54 215.3 240 48.8
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 4.9e-54 215.3 227 52.0
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 1.1e-53 214.2 229 52.4
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.1e-53 214.2 229 52.4
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.4e-53 213.8 224 48.7
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 2.4e-53 213.0 268 47.0
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 4.2e-53 212.2 231 46.3
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 4.2e-53 212.2 247 49.8
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 5.5e-53 211.8 158 62.7
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.2e-52 210.7 280 41.8
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.3e-51 207.2 151 62.3
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 1.9e-50 203.4 204 48.5
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 9.6e-50 201.1 223 46.2
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.6e-49 200.3 249 46.2
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 3.7e-49 199.1 143 67.8
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 5.8e-47 191.8 129 71.3
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 5.8e-47 191.8 134 65.7
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 6.5e-46 188.3 131 66.4
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.6e-44 182.2 263 40.3
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 6.0e-44 181.8 204 49.0
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.3e-43 180.6 129 67.4
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 3.0e-43 179.5 228 46.9
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 8.7e-43 177.9 132 63.6
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.1e-42 177.6 209 50.2
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 4.3e-42 175.6 130 68.5
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.6e-41 173.7 140 57.9
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 2.2e-41 173.3 122 65.6
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 6.9e-40 168.3 154 49.4
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.0e-39 166.8 127 61.4
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 2.1e-36 156.8 124 59.7
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 2.6e-31 139.8 129 58.1
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 3.4e-31 139.4 87 74.7
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 3.6e-28 129.4 84 67.9
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 3.1e-24 116.3 233 32.2
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 3.4e-23 112.8 112 53.6
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 7.2e-21 105.1 88 61.4
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 3.9e-19 99.4 124 40.3
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.4e-16 90.9 180 34.4
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 2.4e-16 90.1 123 38.2
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 1.0e-14 84.7 124 34.7
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 4.2e-13 79.3 117 33.3
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 6.1e-12 75.5 77 46.8
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.3e-09 67.8 107 41.1
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 1.4e-08 64.3 77 40.3
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 1.8e-08 63.9 73 42.5
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 1.6e-07 60.8 96 45.8
CsaV3_6G016170 Cucumis sativus L. HOM05D004149 ORTHO05D174512 1.7e-06 57.4 63 44.4


User provided reference genes

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