Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.6e-124 450.7 529 100.0
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 7.4e-122 441.8 535 95.5
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.0e-115 419.9 529 96.8
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.2e-113 411.8 529 96.2
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 2.6e-95 353.6 529 92.2
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.8e-91 338.6 533 84.8
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.5e-70 268.9 544 63.6
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 1.2e-55 221.9 551 76.4
FAN11G0041 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.3e-43 181.0 102 93.1
FAN10G0942 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.4e-42 177.2 102 90.2
FAN21G0234 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.7e-41 173.7 99 91.9
FAN27G2855 Fragaria x ananassa HOM05D006485 ORTHO05D006108 6.4e-41 172.9 102 89.2
FAN11G0239 Fragaria x ananassa HOM05D006485 ORTHO05D006108 6.2e-36 156.4 84 95.2
FAN03G0002 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.4e-35 155.2 84 95.2
FAN13G1461 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.4e-35 155.2 84 95.2
FAN21G1428 Fragaria x ananassa HOM05D006485 ORTHO05D006108 4.0e-35 153.7 84 94.0
FAN25G0700 Fragaria x ananassa HOM05D000681 ORTHO05D012645 6.6e-22 109.8 98 65.3
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 9.6e-21 105.9 122 54.9
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 8.1e-20 102.8 121 51.2
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 1.4e-19 102.1 114 54.4
FAN22G1073 Fragaria x ananassa HOM05D000681 ORTHO05D012645 9.0e-19 99.4 86 66.3
FAN15G1461 Fragaria x ananassa HOM05D000681 ORTHO05D006108 9.9e-18 95.9 84 65.5
FAN06G3135 Fragaria x ananassa HOM05D000681 ORTHO05D011778 2.9e-17 94.4 84 64.3
FAN28G1994 Fragaria x ananassa HOM05D000681 ORTHO05D006108 2.9e-17 94.4 84 64.3
FAN25G1048 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.4e-16 92.0 84 63.1
Sc02g0001270 Simmondsia chinensis HOM05D006485 ORTHO05D006108 2.4e-16 91.3 135 43.7
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 4.2e-16 90.5 115 50.4
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 5.4e-16 90.1 112 49.1
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 9.3e-16 89.4 115 50.4
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 1.2e-15 89.0 115 50.4
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 1.2e-15 89.0 115 50.4
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 1.6e-15 88.6 80 57.5
TWI53G1251 Tripterygium wilfordii HOM05D006485 ORTHO05D006108 2.1e-15 88.2 128 48.4
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 2.7e-15 87.8 82 56.1
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 2.7e-15 87.8 115 49.6
FAN06G3376 Fragaria x ananassa HOM05D000681 ORTHO05D012645 2.7e-15 87.8 79 63.3
FAN22G1082 Fragaria x ananassa HOM05D000681 ORTHO05D011778 2.7e-15 87.8 79 63.3
FAN24G0338 Fragaria x ananassa HOM05D000681 ORTHO05D011778 2.7e-15 87.8 79 63.3
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 2.7e-15 87.8 127 46.5
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 4.6e-15 87.0 120 48.3
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 6.0e-15 86.7 112 46.4
CSS0031113 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 7.8e-15 86.3 184 36.4
Lj3C1005T3 Lonicera japonica HOM05D011389 ORTHO05D006108 7.8e-15 86.3 120 44.2
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 1.0e-14 85.9 79 57.0
TAR623G0376 Trochodendron aralioides HOM05D006485 ORTHO05D006108 1.0e-14 85.9 123 43.1
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 1.3e-14 85.5 80 55.0
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 1.7e-14 85.1 124 45.2
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 3.0e-14 84.3 118 48.3
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 3.0e-14 84.3 146 39.7
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 5.1e-14 83.6 108 48.1
FAN06G1871 Fragaria x ananassa HOM05D000681 ORTHO05D003965 6.6e-14 83.2 77 62.3
Ah.15g091240 Amaranthus hybridus HOM05D011389 ORTHO05D006108 1.9e-13 81.6 136 41.9
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 1.9e-13 81.6 149 39.6
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 4.3e-13 80.5 94 52.1
BcaC02g11777 Brassica carinata HOM05D006485 ORTHO05D006108 5.6e-13 80.1 102 47.1
BolC4t22800H Brassica oleracea HOM05D006485 ORTHO05D006108 5.6e-13 80.1 102 47.1
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 5.6e-13 80.1 120 43.3
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 7.3e-13 79.7 108 47.2
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 7.3e-13 79.7 101 52.5
Ca_08949_v3 Cicer arietinum L. HOM05D013121 ORTHO05D015407 1.3e-12 79.0 143 39.2
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 1.6e-12 78.6 108 48.1
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 1.6e-12 78.6 108 47.2
Aqoxy1G01006 Aquilegia oxysepala HOM05D006485 ORTHO05D006108 2.1e-12 78.2 201 33.3
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 2.1e-12 78.2 116 44.8
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 2.1e-12 78.2 88 55.7
BcaC02g07584 Brassica carinata HOM05D006485 ORTHO05D006108 3.6e-12 77.4 107 48.6
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 6.2e-12 76.6 131 43.5
EL10Ac7g16753 Beta vulgaris HOM05D006485 ORTHO05D006108 1.1e-11 75.9 100 43.0
vmacro08809 Vaccinium macrocarpon HOM05D011389 ORTHO05D006108 1.8e-11 75.1 72 55.6
Gorai.009G410100 Gossypium raimondii HOM05D006485 ORTHO05D006108 2.4e-11 74.7 138 42.8
Rhsim04G0137200 Rhododendron simsii HOM05D000023 ORTHO05D000014 3.1e-11 74.3 85 51.8
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 4.0e-11 73.9 105 48.6
DCAR_020791 Daucus carota HOM05D006485 ORTHO05D006108 9.0e-11 72.8 113 40.7
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 1.5e-10 72.0 107 43.0
Carub.0005s1954 Capsella rubella HOM05D006485 ORTHO05D006108 2.0e-10 71.6 87 49.4
Gohir.D04G106200 Gossypium hirsutum HOM05D006485 ORTHO05D006108 2.0e-10 71.6 113 46.9
Atru.chr8.1686 Acer truncatum HOM05D006485 ORTHO05D006108 2.6e-10 71.2 100 46.0
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 4.5e-10 70.5 108 42.6
Gohir.A04G067600 Gossypium hirsutum HOM05D006485 ORTHO05D006108 4.5e-10 70.5 113 46.9
Cfa020727 Carpinus fangiana HOM05D006485 ORTHO05D006108 5.8e-10 70.1 96 46.9
Gohir.A09G142800 Gossypium hirsutum HOM05D006485 ORTHO05D006108 5.8e-10 70.1 154 40.9
Actinidia32467 Actinidia chinensis HOM05D011389 ORTHO05D006108 9.9e-10 69.3 98 48.0
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 9.9e-10 69.3 112 37.5
Gohir.D09G139000 Gossypium hirsutum HOM05D006485 ORTHO05D006108 9.9e-10 69.3 154 39.6
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 9.9e-10 69.3 93 48.4
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 1.3e-09 68.9 96 47.9
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 1.7e-09 68.6 89 47.2
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 3.8e-09 67.4 83 54.2
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 4.9e-09 67.0 87 44.8
CAN.G824.55 Capsicum annuum HOM05D006485 ORTHO05D006108 4.9e-09 67.0 96 42.7
PGSC0003DMG400020976 Solanum tuberosum HOM05D011389 ORTHO05D006108 4.9e-09 67.0 90 44.4
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 6.4e-09 66.6 124 42.7
A04p06430 Brassica napus HOM05D006485 ORTHO05D006108 1.1e-08 65.9 109 43.1
Gorai.006G159500 Gossypium raimondii HOM05D006485 ORTHO05D006108 1.4e-08 65.5 160 38.1
Solyc11g042800.2 Solanum lycopersicum HOM05D011389 ORTHO05D006108 1.4e-08 65.5 90 45.6
Sopen11g019160 Solanum pennellii HOM05D011389 ORTHO05D006108 1.4e-08 65.5 90 45.6
BcaC02g09194 Brassica carinata HOM05D006485 ORTHO05D006108 2.4e-08 64.7 111 43.2
BolC4t25563H Brassica oleracea HOM05D006485 ORTHO05D006108 2.4e-08 64.7 111 43.2
Nitab4.5_0011622g0020 Nicotiana tabacum HOM05D011389 ORTHO05D006108 2.4e-08 64.7 71 47.9
Psat3g037480 Pisum sativum HOM05D013121 ORTHO05D015407 2.4e-08 64.7 135 37.8
AL5G33870 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 3.2e-08 64.3 96 45.8
C04p39920 Brassica napus HOM05D006485 ORTHO05D006108 3.2e-08 64.3 108 44.4
CARHR162930 Cardamine hirsuta HOM05D006485 ORTHO05D006108 3.2e-08 64.3 85 48.2
Sopen09g003560 Solanum pennellii HOM05D006485 ORTHO05D006108 3.2e-08 64.3 105 38.1
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 3.2e-08 64.3 104 40.4
BraA04t16347Z Brassica rapa HOM05D006485 ORTHO05D006108 4.2e-08 63.9 109 42.2
C04p11500 Brassica napus HOM05D006485 ORTHO05D006108 5.4e-08 63.5 82 46.3
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 5.4e-08 63.5 113 38.1
DCAR_020790 Daucus carota HOM05D006485 ORTHO05D006108 7.1e-08 63.2 90 42.2
Lalb_Chr01g0018471 Lupinus albus HOM05D013121 ORTHO05D015407 9.3e-08 62.8 145 36.6
Peaxi162Scf00078g00310 Petunia axillaris HOM05D011389 ORTHO05D006108 9.3e-08 62.8 71 45.1
Manes.08G018000 Manihot esculenta HOM05D006485 ORTHO05D006108 1.6e-07 62.0 97 39.2
arahy.Tifrunner.gnm1.ann1.YET5HL Arachis hypogaea HOM05D013121 ORTHO05D015407 2.1e-07 61.6 115 39.1
Lj1g0021486 Lotus japonicus HOM05D013121 ORTHO05D015407 2.1e-07 61.6 152 37.5
Nn2g13931 Nelumbo nucifera HOM05D006485 ORTHO05D006108 2.1e-07 61.6 167 35.3
arahy.Tifrunner.gnm1.ann1.DLQI02 Arachis hypogaea HOM05D013121 ORTHO05D015407 2.7e-07 61.2 110 41.8
Lj3A1005G41 Lonicera japonica HOM05D011389 ORTHO05D006108 2.7e-07 61.2 83 44.6
Medtr7g103280 Medicago truncatula HOM05D013121 ORTHO05D015407 3.5e-07 60.8 132 35.6
THA.LOC104827498 Tarenaya hassleriana HOM05D006485 ORTHO05D006108 4.6e-07 60.5 84 47.6
Migut.C01359 Erythranthe guttata HOM05D011389 ORTHO05D006108 6.0e-07 60.1 68 47.1
TPR.G31495 Trifolium pratense HOM05D013121 ORTHO05D015407 7.9e-07 59.7 134 35.8
Os01g0276300 Oryza sativa ssp. japonica HOM05D057235 ORTHO05D049483 1.0e-06 59.3 112 34.8
SHI27750 Sapria himalayana HOM05D006485 ORTHO05D006108 1.0e-06 59.3 107 44.9
Lalb_Chr06g0172031 Lupinus albus HOM05D013674 ORTHO05D006108 1.3e-06 58.9 83 49.4
SGA_v2.0_scaffold118G32589 Striga asiatica HOM05D011389 ORTHO05D006108 1.3e-06 58.9 104 41.3
unitig_746.g26769 Utricularia gibba HOM05D006485 ORTHO05D006108 2.3e-06 58.2 96 40.6
Lsat_1_v5_gn_6_29041 Lactuca sativa HOM05D006485 ORTHO05D006108 3.9e-06 57.4 95 41.1
PGR142G2869 Punica granatum HOM05D011389 ORTHO05D006108 5.1e-06 57.0 67 50.7
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 5.1e-06 57.0 109 38.5
Lj5g0014301 Lotus japonicus HOM05D036014 ORTHO05D006108 6.7e-06 56.6 117 41.0
ECA238G0083 Erigeron canadensis HOM05D006485 ORTHO05D006108 8.7e-06 56.2 84 41.7
Glyma.10G064400 Glycine max HOM05D013674 ORTHO05D006108 8.7e-06 56.2 87 42.5
Nitab4.5_0006314g0010 Nicotiana tabacum HOM05D006485 ORTHO05D006108 8.7e-06 56.2 119 36.1


User provided reference genes

Program Settings