Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.8e-67 258.5 128 100.0
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 2.1e-62 242.3 128 94.5
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 6.0e-62 240.7 128 93.8
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.3e-61 238.8 128 93.0
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 6.7e-61 237.3 128 93.8
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 8.7e-61 236.9 128 93.0
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 2.8e-59 231.9 128 91.4
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 1.9e-47 192.6 129 76.0
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 6.1e-46 187.6 129 73.6
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 2.3e-45 185.7 129 75.2
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 5.7e-36 154.5 130 65.4
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 4.8e-35 151.4 142 59.9
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 8.2e-35 150.6 141 59.6
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 6.9e-34 147.5 139 61.2
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 1.2e-33 146.7 142 59.2
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 5.5e-31 137.9 135 59.3
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 5.5e-31 137.9 135 59.3
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 7.9e-30 134.0 134 59.0
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 1.4e-29 133.3 130 60.0
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 2.2e-27 125.9 120 59.2
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 2.8e-27 125.6 132 56.8
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 4.8e-27 124.8 138 58.0
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 1.4e-26 123.2 138 58.0
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 1.8e-26 122.9 134 56.7
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 9.1e-26 120.6 138 54.3
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 2.0e-25 119.4 138 53.6
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 7.7e-25 117.5 138 53.6
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.7e-24 116.3 138 53.6
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 1.1e-23 113.6 124 50.0
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 1.1e-23 113.6 124 53.2
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 1.1e-23 113.6 126 54.8
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.5e-23 113.2 124 51.6
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.5e-23 113.2 126 52.4
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 1.9e-23 112.8 122 55.7
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 2.5e-23 112.5 124 55.6
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 2.5e-23 112.5 124 52.4
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 4.2e-23 111.7 113 55.8
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 9.4e-23 110.5 137 47.4
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.7e-22 109.0 124 51.6
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 4.7e-22 108.2 128 53.9
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 4.7e-22 108.2 120 55.0
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 1.0e-21 107.1 125 53.6
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 1.4e-21 106.7 127 54.3
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 1.4e-21 106.7 124 50.8
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 1.8e-21 106.3 125 48.0
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 3.0e-21 105.5 124 54.8
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 2.0e-20 102.8 134 50.7
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 3.3e-20 102.1 124 48.4
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 4.4e-20 101.7 128 51.6
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 7.4e-20 100.9 122 51.6
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 9.7e-20 100.5 140 45.7
FAN25G0828 Fragaria x ananassa HOM05D000531 ORTHO05D000877 9.7e-20 100.5 64 82.8
FAN25G2216 Fragaria x ananassa HOM05D000531 ORTHO05D000877 9.7e-20 100.5 64 82.8
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 9.7e-20 100.5 126 50.0
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 1.7e-19 99.8 132 48.5
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.7e-19 99.8 114 52.6
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 1.1e-18 97.1 130 46.9
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 1.8e-18 96.3 118 49.2
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.8e-18 96.3 114 50.9
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 1.8e-18 96.3 140 46.4
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 4.1e-18 95.1 131 48.1
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 9.1e-18 94.0 121 50.4
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 2.6e-17 92.4 126 50.0
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 2.6e-17 92.4 126 50.0
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 2.6e-17 92.4 114 49.1
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 7.7e-17 90.9 122 45.1
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 3.8e-16 88.6 121 49.6
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 3.8e-16 88.6 143 39.2
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 1.5e-15 86.7 135 45.9
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.9e-15 86.3 125 47.2
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 7.2e-15 84.3 116 44.8
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 4.7e-14 81.6 128 43.0
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 8.0e-14 80.9 124 41.1
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 2.3e-13 79.3 112 46.4
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 3.0e-13 79.0 121 42.1
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 1.2e-12 77.0 127 48.0
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 2.6e-12 75.9 126 40.5
Lj3g0008615 Lotus japonicus HOM05D007398 ORTHO05D004912 9.8e-12 73.9 123 43.1
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 9.8e-12 73.9 118 43.2
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 1.7e-11 73.2 102 51.0
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 1.4e-10 70.1 129 40.3
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 4.1e-10 68.6 103 40.8
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 1.6e-09 66.6 121 42.1
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 2.0e-09 66.2 99 40.4
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 2.0e-09 66.2 89 47.2
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 5.9e-09 64.7 131 38.2
Zm00001eb070220 Zea mays HOM05D007398 ORTHO05D004912 5.9e-09 64.7 132 37.1
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 7.7e-09 64.3 87 47.1
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 1.3e-08 63.5 125 37.6
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 1.7e-08 63.2 124 37.1
ATR0794G061 Amborella trichopoda HOM05D007398 ORTHO05D004912 6.5e-08 61.2 146 31.5
CDE01G0169 Ceratophyllum demersum HOM05D001264 ORTHO05D001167 6.5e-08 61.2 131 38.2
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 8.5e-08 60.8 120 38.3
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 8.5e-08 60.8 89 40.4
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.5e-07 60.1 132 35.6
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 2.5e-07 59.3 129 35.7
Zm00001eb431260 Zea mays HOM05D007398 ORTHO05D004912 2.5e-07 59.3 133 32.3
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 3.2e-07 58.9 96 37.5
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 4.2e-07 58.5 125 36.0
SGA_v2.0_scaffold4G01914 Striga asiatica HOM05D011575 ORTHO05D004912 4.2e-07 58.5 91 42.9
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 5.5e-07 58.2 103 38.8
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.5e-07 58.2 132 34.8
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 5.5e-07 58.2 132 34.8
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 7.2e-07 57.8 130 33.8
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 7.2e-07 57.8 117 36.8
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 7.2e-07 57.8 119 35.3
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 9.4e-07 57.4 107 37.4
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 9.4e-07 57.4 130 37.7
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 9.4e-07 57.4 130 36.2
Haze_06802 Corylus avellana HOM05D061810 ORTHO05D004912 9.4e-07 57.4 103 37.9
Os04g0624701 Oryza sativa ssp. japonica HOM05D007398 ORTHO05D004912 1.2e-06 57.0 102 39.2
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 1.2e-06 57.0 132 34.1
Glyma.13G082600 Glycine max HOM05D011727 ORTHO05D004912 2.1e-06 56.2 98 44.9
Sc16g0005970 Simmondsia chinensis HOM05D007398 ORTHO05D004912 2.1e-06 56.2 111 36.9
VMungo0647G2151 Vigna mungo HOM05D011727 ORTHO05D004912 2.1e-06 56.2 92 42.4
Glyma.14G163600 Glycine max HOM05D011727 ORTHO05D004912 3.6e-06 55.5 90 46.7
Lj1g0009560 Lotus japonicus HOM05D011727 ORTHO05D004912 3.6e-06 55.5 87 42.5
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 4.7e-06 55.1 99 40.4
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 6.1e-06 54.7 128 35.9
AUR62020433 Chenopodium quinoa HOM05D007398 ORTHO05D004912 6.1e-06 54.7 107 40.2
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 8.0e-06 54.3 98 40.8
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 8.0e-06 54.3 128 35.2
SEGI_01426 Sequoiadendron giganteum HOM05D007398 ORTHO05D004912 8.0e-06 54.3 126 34.9


User provided reference genes

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