Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.4e-217 759.2 612 100.0
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.5e-176 622.5 621 88.7
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 7.8e-176 621.3 620 83.4
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 1.0e-175 620.9 620 88.4
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.9e-175 619.0 621 88.4
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.9e-169 600.1 613 79.4
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 6.1e-136 488.8 630 73.7
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 1.2e-96 358.2 651 53.5
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 4.7e-72 276.6 624 47.9
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 5.2e-71 273.1 589 55.2
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 9.2e-68 262.3 600 38.2
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 8.7e-66 255.8 639 36.0
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 6.9e-55 219.5 639 34.7
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 6.2e-48 196.4 638 39.5
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 6.4e-45 186.4 652 38.7
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 2.1e-43 181.4 620 29.5
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 4.6e-43 180.3 654 32.0
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 6.0e-43 179.9 753 40.0
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 3.9e-42 177.2 620 29.5
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 3.9e-42 177.2 591 33.3
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 1.1e-41 175.6 594 35.5
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 1.5e-41 175.3 626 33.5
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 5.6e-41 173.3 660 39.4
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 3.7e-40 170.6 618 32.7
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 3.7e-40 170.6 627 36.7
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 4.8e-40 170.2 681 28.8
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 1.4e-39 168.7 581 27.0
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 5.3e-39 166.8 616 35.7
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 5.3e-39 166.8 662 27.0
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 1.2e-38 165.6 583 32.2
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 7.6e-38 162.9 601 32.3
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.7e-37 161.8 655 34.5
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.2e-37 161.4 655 34.5
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 8.4e-37 159.5 629 27.7
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 1.9e-36 158.3 662 36.4
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 6.0e-35 153.3 660 42.3
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 7.9e-35 152.9 651 37.8
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.3e-34 152.1 586 32.4
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 1.8e-34 151.8 627 30.8
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 8.7e-34 149.4 644 29.2
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 4.3e-33 147.1 163 51.5
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 5.7e-33 146.7 642 25.2
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 5.7e-33 146.7 596 29.0
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 8.2e-32 142.9 624 26.4
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.8e-31 141.7 577 36.9
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 9.0e-31 139.4 653 32.0
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 2.0e-30 138.3 587 37.1
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 1.0e-29 136.0 599 25.0
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 1.3e-29 135.6 646 33.1
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 4.2e-28 130.6 653 23.7
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 2.7e-27 127.9 583 31.6
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 2.3e-26 124.8 164 47.6
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 3.9e-26 124.0 629 28.3
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 9.7e-25 119.4 643 33.9
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 1.7e-24 118.6 625 29.9
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 2.2e-24 118.2 622 30.9
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 2.2e-24 118.2 622 30.9
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 2.8e-24 117.9 692 36.3
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 3.7e-24 117.5 760 29.7
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 6.3e-24 116.7 188 37.8
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.1e-23 115.9 593 31.5
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 1.8e-23 115.2 638 24.3
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.4e-23 114.8 663 27.8
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 3.1e-23 114.4 258 36.4
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 6.9e-23 113.2 634 28.4
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 9.1e-23 112.8 165 40.6
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 2.6e-22 111.3 642 28.8
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 5.9e-22 110.2 202 37.6
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 1.0e-21 109.4 187 36.9
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 2.2e-21 108.2 662 36.7
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.2e-21 108.2 593 26.5
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 5.0e-21 107.1 579 27.1
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 2.5e-20 104.8 645 28.5
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 2.5e-20 104.8 783 24.0
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 4.2e-20 104.0 674 30.7
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 7.2e-20 103.2 593 30.7
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 9.4e-20 102.8 158 40.5
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 6.1e-19 100.1 162 42.6
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 7.9e-19 99.8 160 38.1
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 1.4e-18 99.0 271 28.4
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 1.8e-18 98.6 630 31.6
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 3.0e-18 97.8 658 30.5
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 3.9e-18 97.4 159 42.8
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 1.1e-17 95.9 644 30.0
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 1.5e-17 95.5 160 41.9
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 7.4e-17 93.2 158 38.6
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 4.8e-16 90.5 647 24.9
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 4.8e-16 90.5 628 30.9
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 1.1e-15 89.4 144 34.0
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 3.1e-15 87.8 138 39.9
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 5.3e-15 87.0 600 25.2
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 9.1e-15 86.3 610 36.6
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.2e-14 85.9 611 33.4
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 2.6e-14 84.7 204 32.4
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 1.0e-13 82.8 137 38.0
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 1.3e-13 82.4 612 31.4
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 1.7e-13 82.0 166 33.7
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 3.8e-13 80.9 637 32.0
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 1.1e-12 79.3 704 33.2
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 1.9e-12 78.6 680 29.1
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 1.9e-12 78.6 133 31.6
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 2.5e-12 78.2 284 29.9
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 2.5e-12 78.2 617 32.7
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 3.2e-12 77.8 137 35.8
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 3.2e-12 77.8 208 30.3
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 7.2e-12 76.6 167 32.9
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 1.2e-11 75.9 579 24.0
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 4.7e-11 73.9 618 22.5
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 8.0e-11 73.2 151 29.8
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 8.0e-11 73.2 151 29.8
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 3.9e-10 70.9 579 37.1
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 1.1e-09 69.3 327 30.6
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.1e-09 69.3 206 36.9
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.5e-09 68.9 623 22.6
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 2.6e-09 68.2 236 30.5
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 4.4e-09 67.4 116 35.3
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 5.7e-09 67.0 153 32.7
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 9.7e-09 66.2 690 34.9
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.3e-08 65.9 120 39.2
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.7e-08 65.5 114 37.7
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 2.8e-08 64.7 222 26.6
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 1.1e-07 62.8 588 26.5
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 1.8e-07 62.0 626 28.8
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 2.4e-07 61.6 193 29.5
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 2.4e-07 61.6 638 19.7
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 2.6e-06 58.2 710 29.6
CDE02G2189 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 3.5e-06 57.8 196 24.0
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 3.5e-06 57.8 651 28.1
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 4.5e-06 57.4 46 58.7
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 7.7e-06 56.6 71 39.4


User provided reference genes

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