Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1760 Fragaria x ananassa HOM05D001960 ORTHO05D004348 2.4e-59 231.9 109 100.0
HanXRQChr15g0474171 Helianthus annuus HOM05D001960 ORTHO05D004348 1.6e-55 219.2 102 100.0
FvH4_6g49160 Fragaria vesca HOM05D001960 ORTHO05D004348 3.6e-55 218.0 102 99.0
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 3.6e-55 218.0 102 99.0
FAN05G5323 Fragaria x ananassa HOM05D001960 ORTHO05D004348 3.6e-55 218.0 102 99.0
FAN14G2932 Fragaria x ananassa HOM05D001960 ORTHO05D004348 3.6e-55 218.0 102 99.0
HanXRQChr17g0547421 Helianthus annuus HOM05D001960 ORTHO05D004348 3.6e-55 218.0 102 99.0
Lsat_1_v5_gn_3_102160 Lactuca sativa HOM05D001960 ORTHO05D004348 3.6e-55 218.0 102 99.0
MD09G1048000 Malus domestica HOM05D001960 ORTHO05D004348 3.6e-55 218.0 102 99.0
MD17G1048200 Malus domestica HOM05D001960 ORTHO05D004348 3.6e-55 218.0 102 99.0
PSO017G2769 Papaver somniferum HOM05D001960 ORTHO05D004348 3.6e-55 218.0 102 99.0
PSO478G2180 Papaver somniferum HOM05D001960 ORTHO05D004348 3.6e-55 218.0 102 99.0
Aqoxy3G03291 Aquilegia oxysepala HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
Cpa.g.sc14.35 Carica papaya HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
DCAR_011153 Daucus carota HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
DCAR_011154 Daucus carota HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
Duzib187G1412 Durio zibethinus HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
FAN09G2614 Fragaria x ananassa HOM05D001960 ORTHO05D004348 7.9e-55 216.9 101 100.0
Gohir.A07G215700 Gossypium hirsutum HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
Gohir.A09G022100 Gossypium hirsutum HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
Gohir.D07G222700 Gossypium hirsutum HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
Gohir.D09G021300 Gossypium hirsutum HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
Gorai.001G257000 Gossypium raimondii HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
Gorai.006G025300 Gossypium raimondii HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
Prupe.3G271000 Prunus persica HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
RcHm_v2.0_Chr2g0169031 Rosa chinensis HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
Thecc.04G075700 Theobroma cacao HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
TAR374G0426 Trochodendron aralioides HOM05D001960 ORTHO05D004348 7.9e-55 216.9 102 98.0
Dinv33731 Davidia involucrata HOM05D001960 ORTHO05D004348 1.0e-54 216.5 102 97.1
ECA246G2943 Erigeron canadensis HOM05D001960 ORTHO05D004348 1.0e-54 216.5 102 98.0
EL10Ac2g02943 Beta vulgaris HOM05D001960 ORTHO05D004348 1.4e-54 216.1 102 97.1
AUR62031635 Chenopodium quinoa HOM05D001960 ORTHO05D004348 1.4e-54 216.1 102 97.1
AUR62038866 Chenopodium quinoa HOM05D001960 ORTHO05D004348 1.4e-54 216.1 102 97.1
CSS0024221 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 1.8e-54 215.7 102 98.0
ClCG10G014880 Citrullus lanatus HOM05D001960 ORTHO05D004348 1.8e-54 215.7 102 97.1
MELO3C009887.2 Cucumis melo HOM05D001960 ORTHO05D004348 1.8e-54 215.7 102 97.1
CsaV3_3G041630 Cucumis sativus L. HOM05D001960 ORTHO05D004348 1.8e-54 215.7 102 97.1
Lsat_1_v5_gn_2_88741 Lactuca sativa HOM05D001960 ORTHO05D004348 1.8e-54 215.7 102 97.1
Medtr7g009590 Medicago truncatula HOM05D001960 ORTHO05D004348 2.3e-54 215.3 102 97.1
Sed0008481 Sechium edule HOM05D001960 ORTHO05D004348 2.3e-54 215.3 102 96.1
Lj2A726T8 Lonicera japonica HOM05D001960 ORTHO05D004348 3.0e-54 214.9 102 98.0
Manes.17G022500 Manihot esculenta HOM05D001960 ORTHO05D004348 3.0e-54 214.9 102 97.1
Manes.17G022600 Manihot esculenta HOM05D001960 ORTHO05D004348 3.0e-54 214.9 102 97.1
CSS0022239 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 3.9e-54 214.5 102 97.1
CANSAT11G2018 Cannabis sativa HOM05D001960 ORTHO05D004348 3.9e-54 214.5 102 97.1
Ciclev10012084m.g Citrus clementina HOM05D001960 ORTHO05D004348 3.9e-54 214.5 102 97.1
Hma1.2p1_0449F.1_g155170 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 3.9e-54 214.5 102 97.1
Ah.12g065390 Amaranthus hybridus HOM05D001960 ORTHO05D004348 6.7e-54 213.8 102 96.1
CSS0002033 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 6.7e-54 213.8 102 97.1
Actinidia34797 Actinidia chinensis HOM05D001960 ORTHO05D004348 8.8e-54 213.4 102 96.1
Actinidia38882 Actinidia chinensis HOM05D001960 ORTHO05D004348 8.8e-54 213.4 102 96.1
COL.COLO4_25163 Corchorus olitorius HOM05D001960 ORTHO05D004348 8.8e-54 213.4 102 97.1
Duzib147G0831 Durio zibethinus HOM05D001960 ORTHO05D004348 8.8e-54 213.4 102 96.1
TAR629G1922 Trochodendron aralioides HOM05D001960 ORTHO05D004348 8.8e-54 213.4 102 97.1
Ah.10g031310 Amaranthus hybridus HOM05D001960 ORTHO05D004348 1.1e-53 213.0 102 95.1
Nn1g04484 Nelumbo nucifera HOM05D001960 ORTHO05D004348 1.1e-53 213.0 102 95.1
Psat3g196680 Pisum sativum HOM05D001960 ORTHO05D004348 1.1e-53 213.0 102 95.1
HPP92_006462 Vanilla planifolia HOM05D001960 ORTHO05D004348 1.1e-53 213.0 102 96.1
arahy.Tifrunner.gnm1.ann1.EZF2RR Arachis hypogaea HOM05D001960 ORTHO05D004348 1.5e-53 212.6 102 95.1
arahy.Tifrunner.gnm1.ann1.M50Q99 Arachis hypogaea HOM05D001960 ORTHO05D004348 1.5e-53 212.6 102 95.1
Hund13234 Selenicereus undatus HOM05D001960 ORTHO05D004348 1.5e-53 212.6 102 95.1
CiPaw.04G019300 Carya illinoinensis HOM05D001960 ORTHO05D004348 2.0e-53 212.2 102 95.1
Ca_04106_v3 Cicer arietinum L. HOM05D001960 ORTHO05D004348 2.6e-53 211.8 102 94.1
Ca_04115_v3 Cicer arietinum L. HOM05D001960 ORTHO05D004348 2.6e-53 211.8 102 94.1
PGR142G1484 Punica granatum HOM05D001960 ORTHO05D004348 2.6e-53 211.8 102 95.1
Lj1g0025494 Lotus japonicus HOM05D001960 ORTHO05D004348 3.3e-53 211.5 102 94.1
SGA_v2.0_scaffold236G43786 Striga asiatica HOM05D001960 ORTHO05D004348 4.4e-53 211.1 102 96.1
SGA_v2.0_scaffold30G12526 Striga asiatica HOM05D001960 ORTHO05D004348 4.4e-53 211.1 102 96.1
SalBow1G4343 Salvia bowleyana HOM05D001960 ORTHO05D004348 5.7e-53 210.7 102 96.1
Sed0005459 Sechium edule HOM05D001960 ORTHO05D004348 5.7e-53 210.7 102 94.1
THA.LOC104805447 Tarenaya hassleriana HOM05D001960 ORTHO05D004348 5.7e-53 210.7 102 94.1
THA.LOC104823931 Tarenaya hassleriana HOM05D001960 ORTHO05D004348 5.7e-53 210.7 102 94.1
CiPaw.03G029300 Carya illinoinensis HOM05D001960 ORTHO05D004348 7.4e-53 210.3 102 93.1
Eucgr.I01925 Eucalyptus grandis HOM05D001960 ORTHO05D004348 7.4e-53 210.3 102 95.1
Migut.K01329 Erythranthe guttata HOM05D001960 ORTHO05D004348 9.7e-53 209.9 102 96.1
Nitab4.5_0000098g0050 Nicotiana tabacum HOM05D001960 ORTHO05D004348 1.7e-52 209.1 102 94.1
Nitab4.5_0013371g0010 Nicotiana tabacum HOM05D001960 ORTHO05D004348 1.7e-52 209.1 102 94.1
Peaxi162Scf00163g00105 Petunia axillaris HOM05D001960 ORTHO05D004348 1.7e-52 209.1 102 94.1
Cfa007519 Carpinus fangiana HOM05D001960 ORTHO05D004348 2.2e-52 208.8 102 94.1
Haze_14570 Corylus avellana HOM05D001960 ORTHO05D004348 2.2e-52 208.8 102 94.1
Glyma.09G240300 Glycine max HOM05D001960 ORTHO05D004348 2.2e-52 208.8 102 93.1
Glyma.18G256200 Glycine max HOM05D001960 ORTHO05D004348 2.2e-52 208.8 102 93.1
Potri.017G079200 Populus trichocarpa HOM05D001960 ORTHO05D004348 2.2e-52 208.8 102 95.1
QL02p080802 Quercus lobata HOM05D001960 ORTHO05D004348 2.2e-52 208.8 102 93.1
TWI32G1350 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 2.2e-52 208.8 102 95.1
VMungo1383G3104 Vigna mungo HOM05D001960 ORTHO05D004348 2.2e-52 208.8 102 93.1
AT3G28715 Arabidopsis thaliana HOM05D001960 ORTHO05D004348 2.8e-52 208.4 102 93.1
BcaB07g30124 Brassica carinata HOM05D001960 ORTHO05D004348 2.8e-52 208.4 102 93.1
BcaC03g17524 Brassica carinata HOM05D001960 ORTHO05D004348 2.8e-52 208.4 102 93.1
A02p36010 Brassica napus HOM05D001960 ORTHO05D004348 2.8e-52 208.4 102 93.1
C02p54850 Brassica napus HOM05D001960 ORTHO05D004348 2.8e-52 208.4 102 93.1
BolC2t11546H Brassica oleracea HOM05D001960 ORTHO05D004348 2.8e-52 208.4 102 93.1
BraA02t08600Z Brassica rapa HOM05D001960 ORTHO05D004348 2.8e-52 208.4 102 93.1
TWI60G1096 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 2.8e-52 208.4 102 93.1
MSTRG.15485 Avicennia marina HOM05D001960 ORTHO05D004348 3.7e-52 208.0 102 95.1
MSTRG.3317 Avicennia marina HOM05D001960 ORTHO05D004348 3.7e-52 208.0 102 94.1
Hma1.2p1_0423F.1_g150240 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 3.7e-52 208.0 102 94.1
Manes.17G022700 Manihot esculenta HOM05D001960 ORTHO05D004348 3.7e-52 208.0 102 94.1
Oeu050223.1 Olea europaea HOM05D001960 ORTHO05D004348 3.7e-52 208.0 102 93.1
CAN.G128.149 Capsicum annuum HOM05D001960 ORTHO05D004348 4.8e-52 207.6 102 93.1
Migut.H00896 Erythranthe guttata HOM05D001960 ORTHO05D004348 4.8e-52 207.6 102 95.1
Phvul.008G043300 Phaseolus vulgaris HOM05D001960 ORTHO05D004348 4.8e-52 207.6 102 92.2
Sabra17G0070400 Salix brachista HOM05D001960 ORTHO05D004348 4.8e-52 207.6 102 94.1
Solyc10g081530.2 Solanum lycopersicum HOM05D001960 ORTHO05D004348 4.8e-52 207.6 102 93.1
Sopen10g032040 Solanum pennellii HOM05D001960 ORTHO05D004348 4.8e-52 207.6 102 93.1
PGSC0003DMG400028218 Solanum tuberosum HOM05D001960 ORTHO05D004348 4.8e-52 207.6 102 93.1
unitig_748.g8436 Utricularia gibba HOM05D001960 ORTHO05D004348 8.2e-52 206.8 102 94.1
Lalb_Chr21g0318931 Lupinus albus HOM05D001960 ORTHO05D004348 1.1e-51 206.5 102 92.2
AL5G18390 Arabidopsis lyrata HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
AL5G18410 Arabidopsis lyrata HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
AT3G28710 Arabidopsis thaliana HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
BcaC06g33635 Brassica carinata HOM05D001960 ORTHO05D008957 2.4e-51 205.3 102 92.2
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
A09p03760 Brassica napus HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
C09p03950 Brassica napus HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 2.4e-51 205.3 102 92.2
BolC9t53326H Brassica oleracea HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
BraA09t36012Z Brassica rapa HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
Carub.0005s0724 Capsella rubella HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
Carub.0005s0725 Capsella rubella HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
CARHR151640 Cardamine hirsuta HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
Thhalv10004497m.g Eutrema salsugineum HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
Thhalv10004498m.g Eutrema salsugineum HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
Lalb_Chr02g0159521 Lupinus albus HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 91.2
Lalb_Chr02g0159571 Lupinus albus HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 91.2
Nitab4.5_0002087g0050 Nicotiana tabacum HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
Sp2g17353 Schrenkiella parvula HOM05D001960 ORTHO05D004348 2.4e-51 205.3 102 92.2
Nitab4.5_0000387g0100 Nicotiana tabacum HOM05D001960 ORTHO05D004348 3.1e-51 204.9 102 92.2
BcaB04g19480 Brassica carinata HOM05D001960 ORTHO05D004348 4.1e-51 204.5 102 91.2
Oeu060924.1 Olea europaea HOM05D001960 ORTHO05D004348 4.1e-51 204.5 102 92.2
CDE06G0436 Ceratophyllum demersum HOM05D001960 ORTHO05D004348 1.5e-50 202.6 102 91.2
Aa31LG2G4500 Aethionema arabicum HOM05D001960 ORTHO05D004348 2.0e-50 202.2 102 89.2
CDE04G1714 Ceratophyllum demersum HOM05D001960 ORTHO05D004348 2.0e-50 202.2 102 92.2
Sp2g17360 Schrenkiella parvula HOM05D001960 ORTHO05D004348 2.0e-50 202.2 102 90.2
Zm00001eb160620 Zea mays HOM05D001960 ORTHO05D004348 2.0e-50 202.2 102 90.2
Aa31LG9G1760 Aethionema arabicum HOM05D001960 ORTHO05D004348 3.4e-50 201.4 102 90.2
Sc02g0007720 Simmondsia chinensis HOM05D001960 ORTHO05D004348 3.4e-50 201.4 102 88.2
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 4.5e-50 201.1 102 91.2
Atru.chr8.2689 Acer truncatum HOM05D001960 ORTHO05D004348 1.0e-49 199.9 94 98.9
Os01g0587000 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D004348 1.7e-49 199.1 102 87.3
CSS0026364 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 7.2e-48 193.7 96 93.8
TPR.G4258 Trifolium pratense HOM05D001960 ORTHO05D004348 7.2e-48 193.7 108 85.2
Pp3c20_18840 Physcomitrium patens HOM05D001960 ORTHO05D004348 1.6e-47 192.6 102 86.3
Mapoly0006s0177 Marchantia polymorpha HOM05D001960 ORTHO05D004348 4.7e-47 191.0 102 84.3
Mapoly0140s0023 Marchantia polymorpha HOM05D001960 ORTHO05D004348 2.3e-46 188.7 102 84.3
SMO137G0011 Selaginella moellendorffii HOM05D001960 ORTHO05D004348 2.6e-45 185.3 102 83.3
AagrBONN_evm.TU.Sc2ySwM_340.257 Anthoceros agrestis HOM05D001960 ORTHO05D004348 3.3e-45 184.9 102 82.4
vmacro10254 Vaccinium macrocarpon HOM05D001960 ORTHO05D004348 2.2e-44 182.2 170 57.1
CBR_g20991 Chara braunii HOM05D001960 ORTHO05D004348 6.3e-44 180.6 102 79.4
ATR0706G077 Amborella trichopoda HOM05D001960 ORTHO05D004348 5.3e-43 177.6 102 83.3
Peaxi162Scf00061g02912 Petunia axillaris HOM05D001960 ORTHO05D004348 7.7e-42 173.7 84 94.0
CBR_g20375 Chara braunii HOM05D001960 ORTHO05D004348 3.8e-41 171.4 102 74.5
BolC8t50104H Brassica oleracea HOM05D001960 ORTHO05D004348 6.3e-36 154.1 80 87.5
CSS0019148 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 9.1e-35 150.2 102 74.5
PRCOL_00003698 Prasinoderma coloniale HOM05D001960 ORTHO05D004348 4.5e-34 147.9 101 63.4
Cre03.g176250 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D004348 8.5e-33 143.7 102 60.8
Rhsim09G0146500 Rhododendron simsii HOM05D001960 ORTHO05D004348 1.5e-29 132.9 73 84.9
CARHR151620 Cardamine hirsuta HOM05D001960 ORTHO05D004348 3.5e-26 121.7 60 90.0
GSVIVG01011352001 Vitis vinifera HOM05D001960 ORTHO05D004348 1.3e-25 119.8 56 96.4
RcHm_v2.0_Chr4g0431361 Rosa chinensis HOM05D001960 ORTHO05D004348 6.5e-25 117.5 60 88.3
RcHm_v2.0_Chr6g0297701 Rosa chinensis HOM05D001960 ORTHO05D004348 1.6e-23 112.8 60 83.3
Dinv40238 Davidia involucrata HOM05D001960 ORTHO05D004348 7.5e-21 104.0 53 88.7
MCO01G616 Micromonas commoda HOM05D001960 ORTHO05D004348 1.8e-19 99.4 100 43.0
Haze_26410 Corylus avellana HOM05D001960 ORTHO05D004348 5.4e-19 97.8 95 47.4
Haze_26095 Corylus avellana HOM05D001960 ORTHO05D004348 1.3e-17 93.2 100 43.0
Rhsim09G0146300 Rhododendron simsii HOM05D001960 ORTHO05D004348 8.6e-17 90.5 42 97.6
Cfa024469 Carpinus fangiana HOM05D001960 ORTHO05D004348 1.9e-16 89.4 98 43.9
Medtr7g009485 Medicago truncatula HOM05D001960 ORTHO05D004348 1.9e-16 89.4 42 95.2
Zm00001eb357360 Zea mays HOM05D001960 ORTHO05D033473 2.5e-16 89.0 45 86.7
Hma1.2p1_2982F.1_g331260 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 4.3e-16 88.2 42 95.2
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 1.6e-15 86.3 45 84.4
Dinv33729 Davidia involucrata HOM05D001960 ORTHO05D004348 6.8e-14 80.9 42 90.5
C08p24880 Brassica napus HOM05D001960 ORTHO05D004348 1.3e-12 76.6 40 82.5


User provided reference genes

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