Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1685 Fragaria x ananassa HOM05D000013 ORTHO05D010272 1.1e-30 136.0 68 100.0
FAN16G2615 Fragaria x ananassa HOM05D000013 ORTHO05D000011 9.1e-17 89.7 46 93.5
FvH4_3g03323 Fragaria vesca HOM05D000013 ORTHO05D000011 2.0e-16 88.6 46 91.3
FvH4_6g00257 Fragaria vesca HOM05D000013 ORTHO05D000011 2.0e-16 88.6 46 91.3
FvH4_6g00270 Fragaria vesca HOM05D000013 ORTHO05D000011 2.0e-16 88.6 46 91.3
FAN11G1763 Fragaria x ananassa HOM05D000013 ORTHO05D000011 2.0e-16 88.6 46 91.3
FAN14G3155 Fragaria x ananassa HOM05D000013 ORTHO05D000011 2.0e-16 88.6 46 91.3
FvH4_3g03320 Fragaria vesca HOM05D000013 ORTHO05D000011 4.5e-16 87.4 46 89.1
FAN11G0775 Fragaria x ananassa HOM05D000013 ORTHO05D000011 4.5e-16 87.4 46 89.1
FAN09G2722 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.0e-15 86.3 46 89.1
FAN14G5700 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.7e-15 85.5 46 87.0
FAN21G0642 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.7e-15 85.5 46 89.1
RcHm_v2.0_Chr5g0005101 Rosa chinensis HOM05D000013 ORTHO05D000011 1.1e-14 82.8 46 84.8
FAN25G2228 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.5e-14 82.4 53 77.4
FAN16G0434 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.8e-12 75.5 39 89.7
FAN16G0927 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.8e-12 75.5 39 89.7
RcHm_v2.0_Chr3g0476761 Rosa chinensis HOM05D000013 ORTHO05D000011 2.3e-12 75.1 46 73.9
RcHm_v2.0_Chr3g0476791 Rosa chinensis HOM05D000013 ORTHO05D000011 2.3e-12 75.1 46 73.9
RcHm_v2.0_Chr5g0002911 Rosa chinensis HOM05D000013 ORTHO05D000011 6.8e-12 73.6 46 69.6
FvH4_6g20800 Fragaria vesca HOM05D000013 ORTHO05D000011 8.8e-12 73.2 53 67.9
FAN05G1230 Fragaria x ananassa HOM05D000013 ORTHO05D000011 8.8e-12 73.2 53 67.9
FAN05G1273 Fragaria x ananassa HOM05D000013 ORTHO05D000011 8.8e-12 73.2 53 67.9
FAN14G4633 Fragaria x ananassa HOM05D000013 ORTHO05D000011 8.8e-12 73.2 53 67.9
FAN02G2815 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.5e-11 72.4 53 67.9
Prupe.4G031900 Prunus persica HOM05D000013 ORTHO05D000011 1.5e-11 72.4 46 67.4
Prupe.4G032100 Prunus persica HOM05D000013 ORTHO05D000011 5.7e-11 70.5 51 58.8
RcHm_v2.0_Chr2g0132541 Rosa chinensis HOM05D000013 ORTHO05D000011 5.7e-11 70.5 46 67.4
RcHm_v2.0_Chr3g0476801 Rosa chinensis HOM05D000013 ORTHO05D000011 7.5e-11 70.1 44 72.7
RcHm_v2.0_Chr5g0005071 Rosa chinensis HOM05D000013 ORTHO05D010272 7.5e-11 70.1 43 76.7
RcHm_v2.0_Chr7g0224061 Rosa chinensis HOM05D000013 ORTHO05D000011 7.5e-11 70.1 46 67.4
RcHm_v2.0_Chr3g0476811 Rosa chinensis HOM05D000013 ORTHO05D000011 9.8e-11 69.7 42 73.8
RcHm_v2.0_Chr5g0046181 Rosa chinensis HOM05D000013 ORTHO05D000011 9.8e-11 69.7 46 67.4
RcHm_v2.0_Chr5g0046231 Rosa chinensis HOM05D000013 ORTHO05D000011 9.8e-11 69.7 46 67.4
MD05G1332000 Malus domestica HOM05D000013 ORTHO05D000011 1.7e-10 68.9 58 56.9
RcHm_v2.0_Chr4g0413551 Rosa chinensis HOM05D000013 ORTHO05D000011 1.7e-10 68.9 46 67.4
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 2.2e-10 68.6 53 64.2
Prupe.4G032000 Prunus persica HOM05D000013 ORTHO05D000011 2.2e-10 68.6 46 63.0
MD10G1307800 Malus domestica HOM05D000013 ORTHO05D000011 2.8e-10 68.2 55 58.2
RcHm_v2.0_Chr2g0130831 Rosa chinensis HOM05D000013 ORTHO05D000011 2.8e-10 68.2 46 65.2
Prupe.4G032200 Prunus persica HOM05D000013 ORTHO05D000011 3.7e-10 67.8 46 63.0
FvH4_3g03350 Fragaria vesca HOM05D000013 ORTHO05D000011 4.8e-10 67.4 53 58.5
FAN16G2412 Fragaria x ananassa HOM05D000013 ORTHO05D000011 4.8e-10 67.4 53 58.5
MD05G1332100 Malus domestica HOM05D000013 ORTHO05D000011 4.8e-10 67.4 53 56.6
MD10G1307600 Malus domestica HOM05D000013 ORTHO05D000011 4.8e-10 67.4 41 73.2
FAN11G0449 Fragaria x ananassa HOM05D000013 ORTHO05D000011 6.3e-10 67.0 53 58.5
FvH4_6g20790 Fragaria vesca HOM05D000013 ORTHO05D018166 8.3e-10 66.6 53 62.3
RcHm_v2.0_Chr5g0006341 Rosa chinensis HOM05D000013 ORTHO05D000011 1.1e-09 66.2 53 58.5
FAN25G0295 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.4e-09 65.9 46 63.0
RcHm_v2.0_Chr5g0046161 Rosa chinensis HOM05D000013 ORTHO05D010607 1.4e-09 65.9 43 69.8
FvH4_3g06140 Fragaria vesca HOM05D000013 ORTHO05D000011 1.8e-09 65.5 53 58.5
FAN16G1157 Fragaria x ananassa HOM05D000013 ORTHO05D000011 2.4e-09 65.1 46 63.0
MD05G1327900 Malus domestica HOM05D000013 ORTHO05D000011 3.1e-09 64.7 40 70.0
MD05G1328000 Malus domestica HOM05D000013 ORTHO05D000011 3.1e-09 64.7 40 70.0
FAN14G1159 Fragaria x ananassa HOM05D000013 ORTHO05D000011 4.1e-09 64.3 42 71.4
QL05p079323 Quercus lobata HOM05D000013 ORTHO05D000011 4.1e-09 64.3 44 63.6
QL11p048809 Quercus lobata HOM05D000013 ORTHO05D000011 4.1e-09 64.3 44 63.6
FAN14G1921 Fragaria x ananassa HOM05D000013 ORTHO05D018166 7.0e-09 63.5 53 60.4
RcHm_v2.0_Chr3g0455681 Rosa chinensis HOM05D000013 ORTHO05D000011 7.0e-09 63.5 46 63.0
QL05p079234 Quercus lobata HOM05D000013 ORTHO05D010272 9.1e-09 63.2 43 62.8
RcHm_v2.0_Chr5g0005121 Rosa chinensis HOM05D000013 ORTHO05D346906 9.1e-09 63.2 43 69.8
MD05G1328200 Malus domestica HOM05D000013 ORTHO05D000011 1.2e-08 62.8 40 67.5
QL05p079296 Quercus lobata HOM05D000013 ORTHO05D000011 1.2e-08 62.8 44 61.4
QL11p048857 Quercus lobata HOM05D000013 ORTHO05D000011 1.2e-08 62.8 44 61.4
MD05G1327800 Malus domestica HOM05D000013 ORTHO05D000011 1.6e-08 62.4 40 67.5
QL05p079206 Quercus lobata HOM05D000013 ORTHO05D000011 1.6e-08 62.4 44 61.4
QL11p048933 Quercus lobata HOM05D000013 ORTHO05D000011 1.6e-08 62.4 44 61.4
MD05G1328500 Malus domestica HOM05D000013 ORTHO05D000011 2.0e-08 62.0 40 67.5
QL11p048873 Quercus lobata HOM05D000013 ORTHO05D000011 2.0e-08 62.0 46 58.7
QL11p048962 Quercus lobata HOM05D000013 ORTHO05D000011 4.5e-08 60.8 46 56.5
QL11p048988 Quercus lobata HOM05D000013 ORTHO05D000011 5.9e-08 60.5 44 59.1
QL05p079268 Quercus lobata HOM05D000013 ORTHO05D000011 1.0e-07 59.7 44 63.6
Manes.14G165632 Manihot esculenta HOM05D000013 ORTHO05D000011 8.6e-07 56.6 42 52.4
RcHm_v2.0_Chr2g0132531 Rosa chinensis HOM05D000013 ORTHO05D022640 8.6e-07 56.6 35 71.4
QL05p004237 Quercus lobata HOM05D000013 ORTHO05D000011 1.1e-06 56.2 43 55.8
FAN16G1242 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.5e-06 55.8 50 50.0
FAN16G1430 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.5e-06 55.8 50 50.0
FAN21G3252 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.5e-06 55.8 50 50.0
TAR627G0217 Trochodendron aralioides HOM05D000013 ORTHO05D000011 1.9e-06 55.5 42 59.5
FvH4_3g03410 Fragaria vesca HOM05D000013 ORTHO05D000011 2.5e-06 55.1 50 48.0
FAN11G2941 Fragaria x ananassa HOM05D000013 ORTHO05D000011 2.5e-06 55.1 57 47.4
QL05p079109 Quercus lobata HOM05D000013 ORTHO05D000011 2.5e-06 55.1 43 55.8
FAN16G2358 Fragaria x ananassa HOM05D000013 ORTHO05D000011 3.3e-06 54.7 52 46.2
RcHm_v2.0_Chr5g0005161 Rosa chinensis HOM05D000013 ORTHO05D000011 4.2e-06 54.3 46 50.0
TAR629G3193 Trochodendron aralioides HOM05D000013 ORTHO05D000011 4.2e-06 54.3 40 60.0
RcHm_v2.0_Chr5g0005131 Rosa chinensis HOM05D000013 ORTHO05D000011 5.5e-06 53.9 42 54.8
TAR625G1557 Trochodendron aralioides HOM05D000013 ORTHO05D000011 5.5e-06 53.9 40 57.5
Manes.16G018200 Manihot esculenta HOM05D000013 ORTHO05D000011 7.2e-06 53.5 43 51.2
Manes.16G018380 Manihot esculenta HOM05D000013 ORTHO05D000011 7.2e-06 53.5 43 51.2
Manes.16G018560 Manihot esculenta HOM05D000013 ORTHO05D010272 7.2e-06 53.5 43 51.2
QL05p079128 Quercus lobata HOM05D000013 ORTHO05D000011 7.2e-06 53.5 43 55.8
TAR627G0680 Trochodendron aralioides HOM05D000013 ORTHO05D000011 9.5e-06 53.1 47 53.2
TAR636G0848 Trochodendron aralioides HOM05D000013 ORTHO05D000011 9.5e-06 53.1 54 44.4


User provided reference genes

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