Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1670 Fragaria x ananassa HOM05D006672 ORTHO05D007769 5.7e-86 320.9 160 100.0
FvH4_6g31600 Fragaria vesca HOM05D006672 ORTHO05D007769 1.9e-81 305.8 160 96.2
FAN14G5379 Fragaria x ananassa HOM05D006672 ORTHO05D007769 7.3e-73 277.3 161 90.1
FAN05G5736 Fragaria x ananassa HOM05D006672 ORTHO05D007769 5.4e-68 261.2 166 84.3
RcHm_v2.0_Chr2g0138661 Rosa chinensis HOM05D006672 ORTHO05D007769 4.6e-51 204.9 165 70.9
Prupe.3G068600 Prunus persica HOM05D006672 ORTHO05D007769 1.6e-43 179.9 168 65.5
MD17G1192500 Malus domestica HOM05D006672 ORTHO05D007769 5.1e-34 148.3 168 55.4
CiPaw.02G149600 Carya illinoinensis HOM05D006672 ORTHO05D007769 6.6e-34 147.9 171 58.5
Cfa009362 Carpinus fangiana HOM05D006672 ORTHO05D007769 1.5e-33 146.7 155 59.4
Haze_12408 Corylus avellana HOM05D006672 ORTHO05D007769 4.8e-32 141.7 153 58.2
QL05p022164 Quercus lobata HOM05D006672 ORTHO05D007769 2.4e-31 139.4 165 56.4
Dinv30493 Davidia involucrata HOM05D006672 ORTHO05D007769 5.3e-31 138.3 162 55.6
Cc04_g03140 Coffea canephora HOM05D006672 ORTHO05D007769 6.9e-31 137.9 151 57.0
Rhsim12G0199700 Rhododendron simsii HOM05D006672 ORTHO05D007769 1.7e-29 133.3 165 55.8
Manes.04G128475 Manihot esculenta HOM05D006672 ORTHO05D007769 4.9e-29 131.7 193 49.7
vmacro16964 Vaccinium macrocarpon HOM05D006672 ORTHO05D007769 8.4e-29 131.0 179 52.0
SGA_v2.0_scaffold4G02004 Striga asiatica HOM05D006672 ORTHO05D007769 7.1e-28 127.9 172 50.0
Glyma.08G205200 Glycine max HOM05D006672 ORTHO05D007769 4.6e-27 125.2 151 55.0
ECA234G2073 Erigeron canadensis HOM05D006672 ORTHO05D007769 1.3e-26 123.6 157 53.5
EL10Ac9g22019 Beta vulgaris HOM05D000202 ORTHO05D000117 1.8e-26 123.2 169 51.5
CANSAT56G0062 Cannabis sativa HOM05D006672 ORTHO05D007769 2.3e-26 122.9 169 50.3
AUR62011637 Chenopodium quinoa HOM05D006672 ORTHO05D007769 2.3e-26 122.9 139 59.7
Actinidia24746 Actinidia chinensis HOM05D006672 ORTHO05D007769 3.0e-26 122.5 152 53.9
ClCG07G013120 Citrullus lanatus HOM05D006672 ORTHO05D007769 6.7e-26 121.3 169 50.9
Phvul.010G149100 Phaseolus vulgaris HOM05D006672 ORTHO05D007769 6.7e-26 121.3 176 51.7
Migut.D01021 Erythranthe guttata HOM05D006672 ORTHO05D007769 1.1e-25 120.6 148 54.7
TAR636G2852 Trochodendron aralioides HOM05D006672 ORTHO05D007769 1.5e-25 120.2 158 52.5
TWI75G0771 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 3.3e-25 119.0 185 45.9
Ah.01g021520 Amaranthus hybridus HOM05D006672 ORTHO05D007769 4.3e-25 118.6 156 49.4
Lsat_1_v5_gn_5_130661 Lactuca sativa HOM05D006672 ORTHO05D007769 4.3e-25 118.6 158 51.9
SalBow1G8254 Salvia bowleyana HOM05D000380 ORTHO05D000561 5.6e-25 118.2 147 53.1
Atru.chr1.3318 Acer truncatum HOM05D006672 ORTHO05D007769 1.6e-24 116.7 168 50.6
arahy.Tifrunner.gnm1.ann1.HW7XL7 Arachis hypogaea HOM05D006672 ORTHO05D007769 1.6e-24 116.7 128 57.8
Nitab4.5_0001315g0240 Nicotiana tabacum HOM05D006672 ORTHO05D007769 1.6e-24 116.7 158 50.6
TWI12G1441 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 2.8e-24 115.9 159 50.9
MELO3C012968.2 Cucumis melo HOM05D006672 ORTHO05D007769 3.7e-24 115.5 169 50.9
Hma1.2p1_2022F.1_g311340 Hydrangea macrophylla HOM05D006672 ORTHO05D007769 3.7e-24 115.5 149 51.7
Nitab4.5_0008314g0010 Nicotiana tabacum HOM05D006672 ORTHO05D007769 4.8e-24 115.2 148 50.7
MBI04_g22016_MAGBIO Magnolia biondii HOM05D006672 ORTHO05D007769 6.2e-24 114.8 150 53.3
Oeu040367.1 Olea europaea HOM05D006672 ORTHO05D007769 8.1e-24 114.4 173 49.1
COL.COLO4_30405 Corchorus olitorius HOM05D006672 ORTHO05D007769 1.1e-23 114.0 183 48.1
FvH4_4g05631 Fragaria vesca HOM05D017723 ORTHO05D007769 1.1e-23 114.0 124 57.3
HanXRQChr10g0313401 Helianthus annuus HOM05D006672 ORTHO05D007769 1.1e-23 114.0 164 48.2
THA.LOC104800426 Tarenaya hassleriana HOM05D006672 ORTHO05D007769 1.8e-23 113.2 179 45.3
Potri.003G053500 Populus trichocarpa HOM05D006672 ORTHO05D007769 4.0e-23 112.1 177 45.8
AUR62016468 Chenopodium quinoa HOM05D006672 ORTHO05D007769 5.3e-23 111.7 130 56.2
Lsat_1_v5_gn_2_34400 Lactuca sativa HOM05D008424 ORTHO05D007769 6.9e-23 111.3 148 50.7
arahy.Tifrunner.gnm1.ann1.ZTP7X5 Arachis hypogaea HOM05D006672 ORTHO05D007769 9.0e-23 110.9 128 55.5
Sopen03g039560 Solanum pennellii HOM05D006672 ORTHO05D007769 9.0e-23 110.9 168 46.4
Solyc03g120740.1 Solanum lycopersicum HOM05D006672 ORTHO05D007769 1.2e-22 110.5 168 47.0
VMungo0331G0342 Vigna mungo HOM05D006672 ORTHO05D007769 1.5e-22 110.2 171 46.8
Thecc.06G091100 Theobroma cacao HOM05D006672 ORTHO05D007769 2.0e-22 109.8 193 46.1
MSTRG.22671 Avicennia marina HOM05D006672 ORTHO05D007769 2.6e-22 109.4 151 52.3
CsaV3_3G025030 Cucumis sativus L. HOM05D006672 ORTHO05D007769 3.4e-22 109.0 150 49.3
Sabra03G0029900 Salix brachista HOM05D006672 ORTHO05D007769 3.4e-22 109.0 167 47.3
DCAR_026329 Daucus carota HOM05D006672 ORTHO05D007769 4.5e-22 108.6 158 49.4
arahy.Tifrunner.gnm1.ann1.N61AC9 Arachis hypogaea HOM05D006672 ORTHO05D007769 7.6e-22 107.8 126 56.3
DCAR_022631 Daucus carota HOM05D006672 ORTHO05D007769 7.6e-22 107.8 152 49.3
Ciclev10026595m.g Citrus clementina HOM05D006672 ORTHO05D007769 9.9e-22 107.5 176 46.6
Actinidia08988 Actinidia chinensis HOM05D000726 ORTHO05D007769 1.3e-21 107.1 152 52.6
Lj3g0012066 Lotus japonicus HOM05D006672 ORTHO05D007769 1.3e-21 107.1 165 47.9
Sp1g13550 Schrenkiella parvula HOM05D006672 ORTHO05D007769 2.9e-21 105.9 179 42.5
arahy.Tifrunner.gnm1.ann1.MVJ1PZ Arachis hypogaea HOM05D006672 ORTHO05D007769 4.9e-21 105.1 155 49.0
BraA06t24303Z Brassica rapa HOM05D006672 ORTHO05D007769 1.1e-20 104.0 170 46.5
FAN25G2660 Fragaria x ananassa HOM05D017723 ORTHO05D007769 1.9e-20 103.2 127 54.3
Lsat_1_v5_gn_5_130760 Lactuca sativa HOM05D006672 ORTHO05D007769 1.9e-20 103.2 121 55.4
arahy.Tifrunner.gnm1.ann1.QF27IC Arachis hypogaea HOM05D006672 ORTHO05D007769 3.2e-20 102.4 129 55.0
Carub.0001s1499 Capsella rubella HOM05D006672 ORTHO05D007769 3.2e-20 102.4 167 43.7
Gohir.D05G130600 Gossypium hirsutum HOM05D006672 ORTHO05D007769 4.2e-20 102.1 170 47.6
arahy.Tifrunner.gnm1.ann1.C7681Z Arachis hypogaea HOM05D006672 ORTHO05D007769 7.1e-20 101.3 128 53.9
A06p11230 Brassica napus HOM05D006672 ORTHO05D007769 7.1e-20 101.3 171 45.6
TPR.G17666 Trifolium pratense HOM05D006672 ORTHO05D007769 7.1e-20 101.3 123 56.1
PSO782G0352 Papaver somniferum HOM05D006672 ORTHO05D007769 9.3e-20 100.9 168 44.6
Thhalv10008936m.g Eutrema salsugineum HOM05D006672 ORTHO05D007769 1.2e-19 100.5 174 44.8
BolC5t30073H Brassica oleracea HOM05D006672 ORTHO05D007769 1.6e-19 100.1 171 42.7
Ca_20375_v3 Cicer arietinum L. HOM05D006672 ORTHO05D007769 1.6e-19 100.1 158 46.8
AL1G27320 Arabidopsis lyrata HOM05D006672 ORTHO05D007769 2.1e-19 99.8 167 42.5
Gorai.009G134300 Gossypium raimondii HOM05D006672 ORTHO05D007769 2.7e-19 99.4 160 49.4
AT1G15230 Arabidopsis thaliana HOM05D006672 ORTHO05D007769 3.5e-19 99.0 171 45.0
Gohir.A05G131200 Gossypium hirsutum HOM05D006672 ORTHO05D007769 4.6e-19 98.6 161 48.4
Sed0005168 Sechium edule HOM05D006672 ORTHO05D007769 4.6e-19 98.6 166 44.6
BcaC05g25452 Brassica carinata HOM05D006672 ORTHO05D007769 6.0e-19 98.2 171 43.3
C05p13360 Brassica napus HOM05D006672 ORTHO05D007769 6.0e-19 98.2 171 43.3
arahy.Tifrunner.gnm1.ann1.07RGV5 Arachis hypogaea HOM05D006672 ORTHO05D007769 1.3e-18 97.1 173 43.9
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 1.8e-18 96.7 154 45.5
arahy.Tifrunner.gnm1.ann1.HQ5KA8 Arachis hypogaea HOM05D006672 ORTHO05D007769 3.0e-18 95.9 103 54.4
Lalb_Chr25g0279941 Lupinus albus HOM05D006672 ORTHO05D007769 3.9e-18 95.5 144 47.2
Nn8g39154 Nelumbo nucifera HOM05D006672 ORTHO05D007769 3.9e-18 95.5 188 43.1
CARHR015760 Cardamine hirsuta HOM05D006672 ORTHO05D007769 5.1e-18 95.1 142 46.5
PSO832G0654 Papaver somniferum HOM05D006672 ORTHO05D007769 5.1e-18 95.1 148 44.6
Medtr0206s0010 Medicago truncatula HOM05D006672 ORTHO05D007769 8.7e-18 94.4 165 45.5
unitig_899.g14774 Utricularia gibba HOM05D006672 ORTHO05D007769 1.1e-17 94.0 169 42.6
FvH4_6g22601 Fragaria vesca HOM05D017723 ORTHO05D035582 2.5e-17 92.8 80 68.8
Aqoxy7G01641 Aquilegia oxysepala HOM05D006672 ORTHO05D007769 3.3e-17 92.4 170 45.3
Psat7g250280 Pisum sativum HOM05D006672 ORTHO05D007769 4.3e-17 92.0 114 53.5
Medtr4g012950 Medicago truncatula HOM05D006672 ORTHO05D007769 5.6e-17 91.7 162 44.4
arahy.Tifrunner.gnm1.ann1.K72DJ3 Arachis hypogaea HOM05D006672 ORTHO05D007769 9.6e-17 90.9 101 56.4
Duzib160G0370 Durio zibethinus HOM05D000726 ORTHO05D007769 1.3e-16 90.5 158 44.3
PGSC0003DMG400040414 Solanum tuberosum HOM05D006672 ORTHO05D007769 1.6e-16 90.1 168 42.3
BcaC05g25464 Brassica carinata HOM05D006672 ORTHO05D007769 2.1e-16 89.7 139 50.4
PGR102G2442 Punica granatum HOM05D006672 ORTHO05D007769 2.8e-16 89.4 154 44.2
CSS0000508 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 8.2e-16 87.8 150 42.7
BcaC05g25462 Brassica carinata HOM05D006672 ORTHO05D007769 1.1e-15 87.4 167 40.1
FvH4_5g24053 Fragaria vesca HOM05D031413 ORTHO05D029585 1.2e-14 84.0 87 57.5
Duzib235G0275 Durio zibethinus HOM05D006672 ORTHO05D007769 5.8e-14 81.6 62 69.4
FvH4_1g12841 Fragaria vesca HOM05D017723 ORTHO05D007769 1.7e-13 80.1 79 60.8
Aa31LG7G40 Aethionema arabicum HOM05D006672 ORTHO05D007769 2.9e-13 79.3 150 43.3
FAN16G2610 Fragaria x ananassa HOM05D017723 ORTHO05D007769 3.8e-13 79.0 69 66.7
FAN14G0882 Fragaria x ananassa HOM05D017723 ORTHO05D035582 3.2e-12 75.9 97 52.6
FAN14G3105 Fragaria x ananassa HOM05D017723 ORTHO05D035582 3.2e-12 75.9 70 65.7
Peaxi162Scf00015g00013 Petunia axillaris HOM05D006672 ORTHO05D007769 3.2e-12 75.9 93 54.8
arahy.Tifrunner.gnm1.ann1.DAY3RM Arachis hypogaea HOM05D006672 ORTHO05D007769 4.2e-12 75.5 127 44.9
FAN02G2879 Fragaria x ananassa HOM05D031413 ORTHO05D029585 5.5e-12 75.1 60 66.7
Sc15g0001280 Simmondsia chinensis HOM05D006672 ORTHO05D007769 7.1e-12 74.7 175 40.6
arahy.Tifrunner.gnm1.ann1.XTGM9Z Arachis hypogaea HOM05D006672 ORTHO05D007769 9.3e-12 74.3 115 47.8
FAN06G1160 Fragaria x ananassa HOM05D031413 ORTHO05D029585 4.6e-11 72.0 61 60.7
Mapoly0141s0006 Marchantia polymorpha HOM05D006672 ORTHO05D007769 7.9e-11 71.2 152 39.5
Rhsim06G0080600 Rhododendron simsii HOM05D006672 ORTHO05D007769 1.0e-10 70.9 66 57.6
CSS0037944 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 5.1e-10 68.6 151 37.7
Lsat_1_v5_gn_5_130640 Lactuca sativa HOM05D006672 ORTHO05D007769 1.1e-09 67.4 68 58.8
Zm00001eb098380 Zea mays HOM05D006672 ORTHO05D007769 1.1e-09 67.4 54 64.8
FvH4_7g17200 Fragaria vesca HOM05D031413 ORTHO05D029585 4.3e-09 65.5 105 43.8
ATR0829G196 Amborella trichopoda HOM05D006672 ORTHO05D007769 5.7e-09 65.1 141 38.3
SGA_v2.0_scaffold5G02564 Striga asiatica HOM05D000085 ORTHO05D000274 1.6e-08 63.5 139 40.3
PGR102G0682 Punica granatum HOM05D006672 ORTHO05D007769 2.2e-08 63.2 44 75.0
SEGI_22972 Sequoiadendron giganteum HOM05D006672 ORTHO05D007769 2.2e-08 63.2 153 37.9
Atru.chr1.3332 Acer truncatum HOM05D006672 ORTHO05D007769 4.8e-08 62.0 135 41.5
HPP92_005483 Vanilla planifolia HOM05D006672 ORTHO05D007769 6.3e-08 61.6 132 38.6
Lsat_1_v5_gn_4_162060 Lactuca sativa HOM05D006672 ORTHO05D007769 1.2e-06 57.4 44 70.5
SMO364G0119 Selaginella moellendorffii HOM05D006672 ORTHO05D007769 1.2e-06 57.4 155 35.5
Os09g0344700 Oryza sativa ssp. japonica HOM05D006672 ORTHO05D007769 2.6e-06 56.2 139 34.5
AagrBONN_evm.TU.Sc2ySwM_362.2137 Anthoceros agrestis HOM05D006672 ORTHO05D007769 3.4e-06 55.8 121 34.7
Pp3c1_40010 Physcomitrium patens HOM05D006672 ORTHO05D007769 1.0e-05 54.3 131 37.4


User provided reference genes

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