Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 7.6e-95 350.5 181 100.0
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 1.0e-91 340.1 181 97.2
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 2.0e-87 325.9 193 89.6
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 8.5e-86 320.5 171 97.1
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 4.6e-84 314.7 181 89.5
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 2.9e-78 295.4 177 85.9
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 7.2e-77 290.8 174 84.5
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 5.9e-71 271.2 177 77.4
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 6.5e-70 267.7 176 77.3
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 1.6e-68 263.1 177 71.8
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 2.3e-67 259.2 175 74.9
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 3.9e-67 258.5 179 71.5
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 6.7e-67 257.7 176 74.4
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 1.5e-66 256.5 173 73.4
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 2.0e-66 256.1 177 70.1
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 2.0e-66 256.1 177 74.0
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 4.4e-66 255.0 179 70.4
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 7.4e-66 254.2 179 71.5
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 2.2e-65 252.7 179 69.8
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 3.7e-65 251.9 177 71.2
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 3.7e-65 251.9 178 70.2
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 8.2e-65 250.8 170 72.4
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 8.2e-65 250.8 179 68.7
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 8.2e-65 250.8 173 71.1
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.8e-64 249.6 184 67.4
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 3.1e-64 248.8 173 71.1
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 4.1e-64 248.4 176 70.5
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 4.1e-64 248.4 176 69.9
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 5.3e-64 248.1 177 71.2
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 9.1e-64 247.3 170 71.8
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 1.2e-63 246.9 169 72.8
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 1.6e-63 246.5 187 67.9
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 3.5e-63 245.4 173 69.4
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 4.5e-63 245.0 177 68.4
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 7.7e-63 244.2 177 67.2
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 1.0e-62 243.8 174 70.7
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 1.0e-62 243.8 173 67.6
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 1.3e-62 243.4 177 67.8
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 2.2e-62 242.7 174 69.5
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 2.9e-62 242.3 177 69.5
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 8.5e-62 240.7 171 69.6
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 1.5e-61 240.0 171 69.0
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 3.2e-61 238.8 171 72.5
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 7.2e-61 237.7 173 69.4
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 2.1e-60 236.1 178 66.9
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 3.6e-60 235.3 173 69.4
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 6.1e-60 234.6 177 64.4
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 1.4e-59 233.4 169 69.2
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 1.8e-59 233.0 177 64.4
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 5.2e-59 231.5 177 64.4
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 8.8e-59 230.7 174 69.0
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 1.2e-58 230.3 178 64.6
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 1.2e-58 230.3 178 64.6
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 4.4e-58 228.4 178 64.0
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 4.4e-58 228.4 178 64.0
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 5.7e-58 228.0 177 63.3
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 5.7e-58 228.0 174 62.1
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 7.5e-58 227.6 177 63.3
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 9.7e-58 227.3 177 63.3
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 1.3e-57 226.9 177 63.8
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 1.7e-57 226.5 165 69.7
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 2.8e-57 225.7 172 66.3
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 3.7e-57 225.3 174 64.9
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 4.8e-57 224.9 177 62.7
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 1.8e-56 223.0 180 62.8
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 2.4e-56 222.6 165 66.1
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 2.4e-56 222.6 168 67.3
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 5.3e-56 221.5 172 63.4
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 2.0e-55 219.5 169 64.5
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 3.5e-55 218.8 179 62.0
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 4.5e-55 218.4 139 78.4
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 5.9e-55 218.0 168 64.3
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 5.9e-55 218.0 252 52.4
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 7.7e-55 217.6 147 74.1
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 7.7e-55 217.6 166 64.5
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 3.8e-54 215.3 177 59.9
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 8.5e-54 214.2 138 79.7
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 4.2e-53 211.8 180 61.1
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 9.4e-53 210.7 168 64.3
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 1.2e-52 210.3 152 66.4
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 2.7e-52 209.1 166 65.7
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 3.6e-52 208.8 152 69.7
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 4.7e-52 208.4 167 65.3
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 1.4e-51 206.8 165 61.8
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.2e-50 203.8 210 53.3
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 1.5e-50 203.4 179 59.8
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 1.4e-48 196.8 140 70.7
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 5.4e-48 194.9 150 66.7
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 5.9e-47 191.4 135 68.1
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 1.0e-46 190.7 168 55.4
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 1.7e-46 189.9 177 58.2
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 3.8e-46 188.7 140 63.6
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 4.2e-45 185.3 117 75.2
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 2.8e-44 182.6 143 65.7
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 3.6e-44 182.2 201 50.2
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 7.5e-42 174.5 120 74.2
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 7.0e-40 167.9 120 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 2.0e-39 166.4 168 48.8
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 2.9e-38 162.5 168 48.2
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 5.0e-38 161.8 168 47.0
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 2.0e-34 149.8 139 59.0
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 1.3e-33 147.1 137 53.3
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 3.3e-29 132.5 156 42.3
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 3.6e-28 129.0 112 57.1
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 6.8e-27 124.8 70 92.9
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 2.1e-23 113.2 88 62.5
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 1.3e-17 94.0 73 68.5
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 5.2e-11 72.0 42 76.2
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 8.9e-11 71.2 48 77.1
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 1.2e-10 70.9 153 28.1
Medtr1g051110 Medicago truncatula HOM05D001420 ORTHO05D009292 3.0e-06 56.2 73 46.6


User provided reference genes

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