Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.5e-261 904.4 457 100.0
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.1e-258 895.2 457 99.1
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.8e-255 884.0 457 98.0
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.8e-255 884.0 457 98.2
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 1.1e-254 882.9 457 98.2
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 1.4e-241 839.3 461 93.5
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 2.5e-219 765.4 465 84.1
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 2.2e-215 752.3 451 84.3
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 3.2e-214 748.4 458 82.8
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 3.4e-208 728.4 466 79.2
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 5.1e-204 714.5 459 78.6
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 2.5e-203 712.2 460 78.9
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 4.3e-203 711.4 460 79.6
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 4.3e-203 711.4 459 78.4
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 7.3e-203 710.7 459 78.0
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.1e-202 709.1 459 77.8
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 4.0e-201 704.9 461 78.3
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 2.9e-199 698.7 460 76.1
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.4e-198 695.7 459 76.9
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 7.9e-197 690.6 469 76.3
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 5.6e-195 684.5 473 74.4
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 1.3e-194 683.3 460 76.3
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 3.1e-193 678.7 459 75.6
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 4.9e-191 671.4 459 74.1
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 6.4e-191 671.0 458 73.8
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 8.4e-191 670.6 459 74.9
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 4.6e-189 664.8 477 73.6
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 4.6e-189 664.8 459 73.6
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 6.7e-188 661.0 460 73.9
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 2.5e-187 659.1 440 76.1
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 9.6e-187 657.1 458 72.9
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.6e-186 656.4 460 73.9
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 2.1e-186 656.0 480 72.5
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.8e-185 652.9 459 73.9
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 5.3e-185 651.4 461 73.3
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 5.8e-184 647.9 459 72.8
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 2.9e-183 645.6 461 72.7
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 6.5e-183 644.4 459 71.5
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.9e-182 642.9 458 71.2
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.7e-181 639.0 475 70.9
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 7.9e-181 637.5 459 71.5
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 2.3e-180 636.0 453 72.0
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.1e-179 633.6 461 70.9
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.5e-179 633.3 451 72.1
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 2.5e-179 632.5 459 71.5
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 4.3e-179 631.7 456 70.8
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 5.7e-179 631.3 487 68.6
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 4.8e-178 628.2 494 67.4
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 6.3e-178 627.9 458 71.2
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.1e-177 627.1 458 71.2
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 3.1e-177 625.5 459 71.5
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 6.9e-177 624.4 455 70.8
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 6.9e-177 624.4 454 70.3
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 2.0e-176 622.9 471 69.6
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 7.6e-176 620.9 463 70.6
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.2e-175 619.4 459 70.6
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 5.0e-175 618.2 460 70.0
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 8.5e-175 617.5 452 70.6
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 8.5e-175 617.5 460 69.8
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 8.5e-175 617.5 461 69.6
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 2.5e-174 615.9 453 71.5
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 4.2e-174 615.1 455 69.2
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 9.3e-174 614.0 463 69.5
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 9.3e-174 614.0 458 70.7
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 2.1e-173 612.8 460 69.3
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 4.6e-173 611.7 461 69.6
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 6.1e-173 611.3 461 68.8
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 1.0e-172 610.5 456 69.7
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.3e-172 610.1 453 70.6
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 1.8e-172 609.8 538 59.9
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.3e-172 609.4 453 70.0
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.3e-172 609.4 453 68.2
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 3.9e-172 608.6 455 69.2
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 6.7e-172 607.8 460 70.0
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 1.5e-171 606.7 453 68.9
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 9.7e-171 604.0 449 69.7
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 1.4e-169 600.1 455 68.8
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 1.8e-169 599.7 455 68.8
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 1.8e-169 599.7 455 68.8
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 4.5e-168 595.1 430 71.6
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 2.2e-167 592.8 453 67.8
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.9e-167 592.4 454 68.1
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 5.0e-167 591.7 457 68.7
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 5.0e-167 591.7 452 69.2
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 5.0e-167 591.7 453 69.5
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 5.0e-167 591.7 450 66.2
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.1e-166 590.5 450 67.8
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 4.2e-166 588.6 454 68.9
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 5.5e-166 588.2 442 69.5
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 9.4e-166 587.4 442 69.5
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.6e-165 586.6 454 68.5
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.7e-165 585.9 454 68.3
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 3.6e-165 585.5 458 67.2
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 3.6e-165 585.5 455 67.9
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 6.1e-165 584.7 427 70.0
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 7.9e-165 584.3 454 68.5
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 1.0e-164 583.9 453 68.4
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 2.3e-164 582.8 458 65.9
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 3.0e-164 582.4 431 69.6
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 3.9e-164 582.0 451 68.7
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.1e-163 580.5 458 65.9
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 2.0e-163 579.7 452 66.4
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 3.3e-163 578.9 458 65.9
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 5.7e-163 578.2 463 67.4
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 7.4e-163 577.8 456 66.4
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 7.4e-163 577.8 458 66.4
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 1.3e-162 577.0 454 68.3
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.5e-160 570.1 449 65.7
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 3.4e-160 568.9 459 65.1
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 4.5e-160 568.5 452 67.0
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 1.0e-159 567.4 422 71.1
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 5.0e-159 565.1 452 65.7
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 6.7e-156 554.7 453 67.3
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 4.4e-155 552.0 453 66.2
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 2.2e-154 549.7 453 66.7
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 1.7e-151 540.0 441 66.2
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.1e-150 537.3 464 63.6
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 4.0e-148 528.9 515 56.1
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 2.0e-147 526.6 424 67.2
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.3e-146 523.9 447 61.5
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.5e-144 515.4 430 62.3
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 7.2e-142 508.1 446 61.0
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 9.4e-142 507.7 420 65.7
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.8e-138 495.4 437 61.8
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 8.0e-133 478.0 461 57.9
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.0e-132 477.6 453 58.3
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 6.8e-132 474.9 404 63.4
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 1.0e-127 461.1 515 53.4
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.5e-126 457.2 322 73.0
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 5.6e-126 455.3 433 55.7
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 4.4e-123 445.7 291 79.0
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.9e-122 443.0 391 61.6
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 7.3e-118 428.3 342 67.0
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 2.1e-117 426.8 456 52.4
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 4.0e-116 422.5 480 51.7
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 1.1e-105 387.9 458 50.2
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.6e-101 374.0 258 74.0
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 8.4e-98 361.7 455 46.8
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.3e-87 327.0 320 58.1
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.1e-86 324.7 307 60.3
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 3.1e-84 316.6 468 41.7
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.9e-81 307.4 290 60.7
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 4.5e-75 286.2 197 73.1
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 5.8e-75 285.8 261 60.5
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.9e-73 280.8 216 67.1
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 3.2e-73 280.0 197 70.6
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.1e-72 277.3 213 69.0
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 3.9e-71 273.1 301 53.2
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 8.7e-71 271.9 196 69.9
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 8.2e-69 265.4 184 75.5
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 3.9e-63 246.5 237 57.8
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.5e-59 234.6 451 38.8
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.2e-56 224.9 158 72.8
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 2.7e-56 223.8 219 55.3
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 4.5e-51 206.5 292 44.5
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 3.6e-48 196.8 133 72.9
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 1.8e-47 194.5 120 80.0
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 8.2e-45 185.7 174 53.4
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 4.2e-41 173.3 140 61.4
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 4.2e-41 173.3 321 36.8
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 7.2e-41 172.6 177 52.0
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 3.9e-39 166.8 303 38.3
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 2.6e-35 154.1 299 36.1
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 5.3e-28 129.8 159 46.5
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 5.3e-28 129.8 76 82.9
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 1.2e-27 128.6 114 57.0
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 1.6e-27 128.3 154 53.2
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 8.5e-26 122.5 79 82.3
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 2.7e-24 117.5 125 60.0
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 7.5e-22 109.4 126 54.0
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 1.2e-19 102.1 113 59.3
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 5.0e-18 96.7 76 69.7
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 7.5e-14 82.8 109 47.7
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 2.4e-12 77.8 47 78.7
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.4e-12 77.8 58 67.2
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 2.3e-10 71.2 112 44.6
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 3.8e-10 70.5 51 68.6
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 9.5e-09 65.9 118 44.1
Pp3c11_12130 Physcomitrium patens HOM05D002054 ORTHO05D004936 3.6e-08 63.9 159 32.7
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 8.0e-08 62.8 42 71.4
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 6.8e-07 59.7 61 50.8
Pp3c7_14100 Physcomitrium patens HOM05D002054 ORTHO05D004936 8.9e-07 59.3 158 32.3
Thecc.09G143700 Theobroma cacao HOM05D002054 ORTHO05D004936 4.4e-06 57.0 147 27.9
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 7.5e-06 56.2 36 66.7
Lsat_1_v5_gn_5_45480 Lactuca sativa HOM05D002054 ORTHO05D004936 9.8e-06 55.8 151 27.2


User provided reference genes

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