Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1478 Fragaria x ananassa HOM05D000644 ORTHO05D017476 7.6e-55 216.9 104 100.0
FAN05G0936 Fragaria x ananassa HOM05D000644 ORTHO05D000504 5.3e-32 141.0 99 77.8
FvH4_2g02720 Fragaria vesca HOM05D000644 ORTHO05D000504 7.6e-31 137.1 98 73.5
FAN24G1829 Fragaria x ananassa HOM05D000644 ORTHO05D000504 1.7e-30 136.0 98 73.5
FAN27G3069 Fragaria x ananassa HOM05D000644 ORTHO05D000504 3.2e-29 131.7 98 72.4
FAN15G1298 Fragaria x ananassa HOM05D000644 ORTHO05D000504 9.3e-29 130.2 98 71.4
FAN20G0801 Fragaria x ananassa HOM05D000644 ORTHO05D000504 9.3e-29 130.2 98 71.4
FAN09G4353 Fragaria x ananassa HOM05D000061 ORTHO05D004086 3.3e-26 121.7 65 90.8
FAN02G1190 Fragaria x ananassa HOM05D000644 ORTHO05D000504 6.2e-25 117.5 77 79.2
RcHm_v2.0_Chr6g0247171 Rosa chinensis HOM05D000644 ORTHO05D000504 4.1e-24 114.8 98 63.3
FvH4_6g45201 Fragaria vesca HOM05D000644 ORTHO05D017476 5.8e-23 110.9 79 74.7
MD10G1114300 Malus domestica HOM05D000644 ORTHO05D000504 4.6e-20 101.3 101 60.4
Prupe.8G155800 Prunus persica HOM05D000644 ORTHO05D000504 7.9e-20 100.5 102 58.8
Rhsim05G0094000 Rhododendron simsii HOM05D000644 ORTHO05D000504 1.8e-19 99.4 99 55.6
Cfa004751 Carpinus fangiana HOM05D000644 ORTHO05D000504 3.9e-19 98.2 98 54.1
Dinv09510 Davidia involucrata HOM05D000644 ORTHO05D000504 8.7e-19 97.1 99 56.6
Actinidia28007 Actinidia chinensis HOM05D000644 ORTHO05D000504 1.9e-18 95.9 100 56.0
Haze_10352 Corylus avellana HOM05D000644 ORTHO05D000504 5.7e-18 94.4 110 49.1
Haze_10348 Corylus avellana HOM05D000644 ORTHO05D000504 7.4e-18 94.0 110 49.1
Dinv09514 Davidia involucrata HOM05D000644 ORTHO05D000504 7.4e-18 94.0 99 54.5
TWI14G0622 Tripterygium wilfordii HOM05D000644 ORTHO05D000504 1.3e-17 93.2 99 52.5
Dinv16055 Davidia involucrata HOM05D000644 ORTHO05D000504 4.8e-17 91.3 99 52.5
Cc02_g20340 Coffea canephora HOM05D000644 ORTHO05D000504 6.3e-17 90.9 100 55.0
CANSAT11G0027 Cannabis sativa HOM05D000644 ORTHO05D000504 1.4e-16 89.7 99 51.5
MD05G1110800 Malus domestica HOM05D000644 ORTHO05D000504 1.4e-16 89.7 101 57.4
DCAR_021928 Daucus carota HOM05D000644 ORTHO05D000504 1.8e-16 89.4 98 50.0
Nitab4.5_0001477g0120 Nicotiana tabacum HOM05D000644 ORTHO05D000504 2.4e-16 89.0 100 53.0
Potri.001G288000 Populus trichocarpa HOM05D000644 ORTHO05D000504 2.4e-16 89.0 99 51.5
Cpa.g.sc20.74 Carica papaya HOM05D000644 ORTHO05D000504 5.3e-16 87.8 99 46.5
Migut.N01117 Erythranthe guttata HOM05D000644 ORTHO05D000504 6.9e-16 87.4 98 50.0
CsaV3_7G007530 Cucumis sativus L. HOM05D000644 ORTHO05D000504 1.2e-15 86.7 98 51.0
SalBow6G5299 Salvia bowleyana HOM05D000644 ORTHO05D000504 2.0e-15 85.9 100 47.0
Manes.07G050000 Manihot esculenta HOM05D000644 ORTHO05D000504 2.6e-15 85.5 99 47.5
TWI59G1223 Tripterygium wilfordii HOM05D000644 ORTHO05D000504 2.6e-15 85.5 98 49.0
Thecc.02G033800 Theobroma cacao HOM05D000644 ORTHO05D000504 3.4e-15 85.1 99 49.5
vmacro22265 Vaccinium macrocarpon HOM05D000644 ORTHO05D000504 4.5e-15 84.7 100 48.0
QL11p027797 Quercus lobata HOM05D000644 ORTHO05D000504 5.9e-15 84.3 101 48.5
GSVIVG01036988001 Vitis vinifera HOM05D000644 ORTHO05D000504 5.9e-15 84.3 102 50.0
MELO3C018549.2 Cucumis melo HOM05D000644 ORTHO05D000504 7.7e-15 84.0 98 49.0
Lj9A339G49 Lonicera japonica HOM05D000644 ORTHO05D000504 7.7e-15 84.0 104 51.0
Potri.009G082300 Populus trichocarpa HOM05D000644 ORTHO05D000504 7.7e-15 84.0 99 47.5
CAN.G504.30 Capsicum annuum HOM05D000644 ORTHO05D000504 1.0e-14 83.6 100 50.0
TAR376G1067 Trochodendron aralioides HOM05D000644 ORTHO05D000504 1.3e-14 83.2 99 52.5
CSS0017881 Camellia sinensis var. sinensis HOM05D000644 ORTHO05D000504 2.2e-14 82.4 100 48.0
Sabra16G0180300 Salix brachista HOM05D000644 ORTHO05D000504 2.2e-14 82.4 99 48.5
PGSC0003DMG400005124 Solanum tuberosum HOM05D000644 ORTHO05D000504 2.2e-14 82.4 100 50.0
TPR.G16868 Trifolium pratense HOM05D000644 ORTHO05D000504 2.2e-14 82.4 99 46.5
Ciclev10028492m.g Citrus clementina HOM05D000644 ORTHO05D000504 2.9e-14 82.0 100 49.0
Medtr4g092610 Medicago truncatula HOM05D000644 ORTHO05D000504 2.9e-14 82.0 99 47.5
CiPaw.05G023600 Carya illinoinensis HOM05D000644 ORTHO05D000504 5.0e-14 81.3 99 47.5
Glyma.07G185800 Glycine max HOM05D000644 ORTHO05D000504 6.5e-14 80.9 99 48.5
Glyma.08G063400 Glycine max HOM05D000644 ORTHO05D000504 6.5e-14 80.9 99 48.5
Solyc01g106570.3 Solanum lycopersicum HOM05D000644 ORTHO05D000504 6.5e-14 80.9 100 49.0
Gohir.A03G213200 Gossypium hirsutum HOM05D000644 ORTHO05D000504 8.5e-14 80.5 99 47.5
VMungo0251G3284 Vigna mungo HOM05D000644 ORTHO05D000504 1.4e-13 79.7 99 49.5
Duzib052G0954 Durio zibethinus HOM05D000644 ORTHO05D000504 2.5e-13 79.0 99 46.5
Nitab4.5_0007763g0020 Nicotiana tabacum HOM05D000644 ORTHO05D000504 2.5e-13 79.0 113 45.1
Sopen01g048920 Solanum pennellii HOM05D000644 ORTHO05D000504 3.2e-13 78.6 100 48.0
ClCG02G007370 Citrullus lanatus HOM05D000644 ORTHO05D000504 4.2e-13 78.2 108 44.4
Gorai.005G262700 Gossypium raimondii HOM05D000644 ORTHO05D000504 7.2e-13 77.4 99 45.5
Phvul.002G217200 Phaseolus vulgaris HOM05D000644 ORTHO05D000504 7.2e-13 77.4 99 48.5
Psat7g104680 Pisum sativum HOM05D000644 ORTHO05D000504 7.2e-13 77.4 99 45.5
Glyma.13G252800 Glycine max HOM05D000644 ORTHO05D000504 1.2e-12 76.6 99 48.5
Duzib132G1010 Durio zibethinus HOM05D000644 ORTHO05D000504 1.6e-12 76.3 99 45.5
Gohir.D02G234700 Gossypium hirsutum HOM05D000644 ORTHO05D000504 1.6e-12 76.3 99 44.4
SalBow6G3369 Salvia bowleyana HOM05D000644 ORTHO05D000504 2.1e-12 75.9 100 42.0
Carub.0003s2851 Capsella rubella HOM05D000644 ORTHO05D000504 2.7e-12 75.5 98 44.9
Aa31sc730G20 Aethionema arabicum HOM05D000644 ORTHO05D000504 4.6e-12 74.7 98 44.9
arahy.Tifrunner.gnm1.ann1.FCW1MU Arachis hypogaea HOM05D000644 ORTHO05D000504 4.6e-12 74.7 100 47.0
HanXRQChr10g0301991 Helianthus annuus HOM05D000644 ORTHO05D000504 6.1e-12 74.3 99 47.5
CARHR241790 Cardamine hirsuta HOM05D000644 ORTHO05D000504 7.9e-12 73.9 99 44.4
CiPaw.06G162000 Carya illinoinensis HOM05D000644 ORTHO05D000504 7.9e-12 73.9 104 42.3
PGR142G2966 Punica granatum HOM05D000644 ORTHO05D000504 7.9e-12 73.9 101 40.6
Sed0021248 Sechium edule HOM05D000644 ORTHO05D000504 1.4e-11 73.2 100 46.0
Aa31LG8G12730 Aethionema arabicum HOM05D000644 ORTHO05D000504 2.3e-11 72.4 100 45.0
Carub.0007s0672 Capsella rubella HOM05D000644 ORTHO05D000504 3.0e-11 72.0 99 46.5
Eucgr.I02511 Eucalyptus grandis HOM05D000644 ORTHO05D000504 3.0e-11 72.0 99 45.5
Eucgr.L02046 Eucalyptus grandis HOM05D000644 ORTHO05D000504 3.0e-11 72.0 99 45.5
Nn5g30688 Nelumbo nucifera HOM05D000644 ORTHO05D000504 3.0e-11 72.0 99 46.5
Lj4g0006604 Lotus japonicus HOM05D000644 ORTHO05D000504 3.9e-11 71.6 99 45.5
AT4G33700 Arabidopsis thaliana HOM05D000644 ORTHO05D000504 5.1e-11 71.2 99 45.5
ECA236G0453 Erigeron canadensis HOM05D000644 ORTHO05D000504 5.1e-11 71.2 99 39.4
Lsat_1_v5_gn_7_84261 Lactuca sativa HOM05D000644 ORTHO05D000504 5.1e-11 71.2 101 42.6
Lj5C222T26 Lonicera japonica HOM05D000644 ORTHO05D000504 5.1e-11 71.2 108 45.4
Lalb_Chr05g0217971 Lupinus albus HOM05D000644 ORTHO05D000504 5.1e-11 71.2 99 46.5
AL7G17780 Arabidopsis lyrata HOM05D000644 ORTHO05D000504 6.7e-11 70.9 99 46.5
Glyma.15G062100 Glycine max HOM05D000644 ORTHO05D000504 6.7e-11 70.9 99 46.5
Sp3g27720 Schrenkiella parvula HOM05D000644 ORTHO05D000504 6.7e-11 70.9 98 43.9
Gorai.008G043300 Gossypium raimondii HOM05D000644 ORTHO05D000504 8.8e-11 70.5 98 42.9
ECA234G1846 Erigeron canadensis HOM05D000644 ORTHO05D000504 1.5e-10 69.7 99 45.5
Gohir.D12G041400 Gossypium hirsutum HOM05D000644 ORTHO05D000504 1.5e-10 69.7 98 42.9
MSTRG.27775 Avicennia marina HOM05D000644 ORTHO05D000504 2.5e-10 68.9 99 43.4
BcaB08g34554 Brassica carinata HOM05D000644 ORTHO05D000504 2.5e-10 68.9 100 44.0
Lsat_1_v5_gn_5_109701 Lactuca sativa HOM05D000644 ORTHO05D000504 2.5e-10 68.9 98 42.9
Lsat_1_v5_gn_7_84241 Lactuca sativa HOM05D000644 ORTHO05D000504 2.5e-10 68.9 100 39.0
Peaxi162Scf00016g03341 Petunia axillaris HOM05D000644 ORTHO05D000504 2.5e-10 68.9 74 54.1
BraA03t13653Z Brassica rapa HOM05D000644 ORTHO05D000504 3.3e-10 68.6 97 40.2
THA.LOC104804428 Tarenaya hassleriana HOM05D000644 ORTHO05D000504 3.3e-10 68.6 100 45.0
VMungo0540G0242 Vigna mungo HOM05D000644 ORTHO05D000504 5.7e-10 67.8 99 44.4
Glyma.15G061900 Glycine max HOM05D000644 ORTHO05D000504 9.7e-10 67.0 99 42.4
A03p45180 Brassica napus HOM05D000644 ORTHO05D000504 1.3e-09 66.6 100 42.0
MBI16_g36641_MAGBIO Magnolia biondii HOM05D000644 ORTHO05D000504 1.3e-09 66.6 99 43.4
Phvul.006G197700 Phaseolus vulgaris HOM05D000644 ORTHO05D000504 1.3e-09 66.6 100 45.0
BcaC01g03098 Brassica carinata HOM05D000644 ORTHO05D000504 2.2e-09 65.9 100 42.0
C03p56050 Brassica napus HOM05D000644 ORTHO05D000504 2.2e-09 65.9 100 42.0
BolC3t17892H Brassica oleracea HOM05D000644 ORTHO05D000504 2.2e-09 65.9 100 42.0
Migut.B00495 Erythranthe guttata HOM05D000644 ORTHO05D000504 2.2e-09 65.9 100 39.0
Sc18g0007290 Simmondsia chinensis HOM05D000644 ORTHO05D000504 2.2e-09 65.9 102 43.1
TAR628G0122 Trochodendron aralioides HOM05D000644 ORTHO05D000504 2.2e-09 65.9 99 41.4
Gohir.A01G179700 Gossypium hirsutum HOM05D000644 ORTHO05D000504 2.8e-09 65.5 96 41.7
C01p05010 Brassica napus HOM05D000644 ORTHO05D000504 3.7e-09 65.1 99 43.4
A01p04620 Brassica napus HOM05D000644 ORTHO05D000504 4.8e-09 64.7 99 43.4
Ca_00198_v3 Cicer arietinum L. HOM05D000644 ORTHO05D000504 4.8e-09 64.7 100 42.0
THA.LOC104819517 Tarenaya hassleriana HOM05D000644 ORTHO05D000504 4.8e-09 64.7 98 42.9
Thhalv10025294m.g Eutrema salsugineum HOM05D000644 ORTHO05D000504 1.1e-08 63.5 98 42.9
Sp7g31440 Schrenkiella parvula HOM05D000644 ORTHO05D000504 1.1e-08 63.5 99 42.4
VMungo0540G1587 Vigna mungo HOM05D000644 ORTHO05D000504 1.4e-08 63.2 100 42.0
Gorai.002G212300 Gossypium raimondii HOM05D000644 ORTHO05D000504 2.4e-08 62.4 96 39.6
PSO541G4409 Papaver somniferum HOM05D000644 ORTHO05D000504 2.4e-08 62.4 104 40.4
PSO675G4018 Papaver somniferum HOM05D000644 ORTHO05D000504 2.4e-08 62.4 104 40.4
AT2G14520 Arabidopsis thaliana HOM05D000644 ORTHO05D000504 3.1e-08 62.0 98 42.9
Thhalv10022700m.g Eutrema salsugineum HOM05D000644 ORTHO05D000504 3.1e-08 62.0 97 41.2
BcaC09g52180 Brassica carinata HOM05D000644 ORTHO05D000504 4.1e-08 61.6 99 42.4
Hund00409 Selenicereus undatus HOM05D000644 ORTHO05D000504 4.1e-08 61.6 97 43.3
ATR0019G001 Amborella trichopoda HOM05D000644 ORTHO05D000504 5.3e-08 61.2 97 35.1
GSVIVG01007281001 Vitis vinifera HOM05D000644 ORTHO05D000504 5.3e-08 61.2 98 41.8
unitig_62.g23636 Utricularia gibba HOM05D000644 ORTHO05D000504 6.9e-08 60.8 98 35.7
COL.COLO4_17823 Corchorus olitorius HOM05D000644 ORTHO05D017476 1.5e-07 59.7 62 50.0
BraA01t00445Z Brassica rapa HOM05D000644 ORTHO05D000504 2.0e-07 59.3 100 43.0
Manes.12G118200 Manihot esculenta HOM05D000644 ORTHO05D000504 2.6e-07 58.9 98 41.8
BolC1t00483H Brassica oleracea HOM05D000644 ORTHO05D000504 7.7e-07 57.4 100 42.0
Cfa006780 Carpinus fangiana HOM05D000644 ORTHO05D000504 7.7e-07 57.4 98 43.9
Haze_03979 Corylus avellana HOM05D000644 ORTHO05D000504 7.7e-07 57.4 96 42.7
Sed0021149 Sechium edule HOM05D000644 ORTHO05D000504 1.0e-06 57.0 99 41.4
EL10Ac9g22157 Beta vulgaris HOM05D000644 ORTHO05D000504 1.3e-06 56.6 97 39.2
AUR62030894 Chenopodium quinoa HOM05D000644 ORTHO05D000504 1.3e-06 56.6 97 38.1
SGA_v2.0_scaffold342G49423 Striga asiatica HOM05D000644 ORTHO05D000504 2.2e-06 55.8 99 37.4
Thecc.01G077500 Theobroma cacao HOM05D000644 ORTHO05D000504 2.2e-06 55.8 96 37.5
MELO3C007660.2 Cucumis melo HOM05D000644 ORTHO05D000504 3.8e-06 55.1 100 37.0
Aqoxy6G02957 Aquilegia oxysepala HOM05D000644 ORTHO05D000504 5.0e-06 54.7 100 41.0
Cpa.g.sc129.65 Carica papaya HOM05D000644 ORTHO05D000504 8.5e-06 53.9 97 39.2
ClCG01G017850 Citrullus lanatus HOM05D000644 ORTHO05D000504 8.5e-06 53.9 97 38.1


User provided reference genes

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