Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 0.0e+00 1485.7 774 100.0
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 0.0e+00 1386.7 774 94.2
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 0.0e+00 1362.1 786 91.6
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 0.0e+00 1359.4 774 92.6
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 0.0e+00 1308.5 771 89.2
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 0.0e+00 1179.1 775 79.7
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 0.0e+00 1159.1 775 78.2
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 0.0e+00 1156.4 775 78.3
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 7.1e-307 1057.0 583 94.5
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 7.3e-304 1047.0 780 70.8
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 1.5e-296 1022.7 772 69.9
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 4.0e-294 1014.6 774 68.6
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 5.8e-293 1010.7 773 69.2
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 7.1e-291 1003.8 760 69.6
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 5.1e-289 997.7 780 67.8
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.4e-286 989.6 775 66.1
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 4.5e-285 984.6 791 66.1
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 1.3e-281 973.0 775 66.3
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 1.8e-278 962.6 773 65.6
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 4.0e-278 961.4 777 66.3
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 6.9e-278 960.7 772 64.9
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.5e-277 959.5 772 64.8
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 2.0e-277 959.1 706 71.0
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 1.7e-276 956.1 774 66.4
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.9e-275 952.6 775 64.1
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 7.1e-275 950.7 713 70.3
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 3.3e-272 941.8 776 64.4
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 4.3e-272 941.4 777 64.1
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 1.2e-269 933.3 776 63.0
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 1.5e-269 932.9 778 62.6
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 1.9e-267 926.0 774 63.0
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 2.5e-267 925.6 788 62.2
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.5e-267 925.6 782 64.1
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 9.3e-267 923.7 776 62.8
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 2.3e-265 919.1 775 62.1
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 3.9e-265 918.3 796 61.1
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 3.9e-265 918.3 803 62.0
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 3.1e-262 908.7 753 64.3
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 4.5e-261 904.8 772 63.5
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.0e-260 903.7 775 61.4
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 2.2e-260 902.5 780 62.2
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 1.1e-259 900.2 775 61.0
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 1.4e-259 899.8 775 61.4
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 1.4e-259 899.8 777 60.6
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 3.2e-259 898.7 776 61.1
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 5.5e-259 897.9 781 61.8
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 7.9e-258 894.0 769 60.5
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 1.4e-257 893.3 775 60.8
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.4e-257 893.3 775 61.5
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 2.0e-256 889.4 755 62.6
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 2.5e-256 889.0 773 60.4
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 5.7e-256 887.9 775 61.4
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 2.8e-255 885.6 775 60.5
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 4.5e-253 878.2 775 60.1
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 2.5e-251 872.5 770 59.7
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 3.6e-250 868.6 773 58.5
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 3.0e-249 865.5 773 59.8
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 5.1e-249 864.8 775 58.3
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 9.7e-248 860.5 773 58.9
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 2.2e-247 859.4 778 58.2
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 4.8e-247 858.2 773 58.3
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 4.8e-247 858.2 773 58.3
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.7e-244 849.7 778 57.8
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 5.0e-244 848.2 773 58.9
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.5e-243 846.7 776 58.4
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 4.2e-243 845.1 800 56.2
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.6e-242 843.2 784 58.0
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 4.0e-241 838.6 774 56.7
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.5e-240 836.6 776 58.8
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 2.2e-239 832.8 787 56.5
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 1.1e-238 830.5 696 63.2
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.4e-238 829.3 723 61.8
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 2.0e-237 826.2 710 62.3
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 1.3e-236 823.5 773 59.0
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.9e-235 819.7 778 57.2
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.2e-234 817.0 773 57.1
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 1.0e-233 813.9 774 57.8
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 4.0e-233 812.0 815 54.5
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.3e-228 797.0 772 56.9
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 2.2e-228 796.2 780 55.6
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 2.1e-226 789.6 587 69.2
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.3e-223 780.4 592 67.7
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 2.0e-221 773.1 718 61.1
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 2.9e-220 769.2 759 55.9
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 5.0e-220 768.5 773 54.1
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 1.4e-217 760.4 774 52.7
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 2.3e-217 759.6 706 58.8
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 7.8e-213 744.6 752 56.9
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 1.1e-211 740.7 578 67.1
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 1.4e-209 733.8 583 66.6
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.2e-208 730.7 578 66.8
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 3.0e-204 716.1 780 52.9
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 1.2e-202 710.7 584 64.2
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 7.5e-200 701.4 774 49.9
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 2.9e-199 699.5 515 71.7
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 6.4e-199 698.4 772 49.2
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 1.9e-198 696.8 592 61.5
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 1.0e-196 691.0 580 61.6
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 2.3e-196 689.9 648 57.4
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 1.7e-191 673.7 671 54.2
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 8.4e-191 671.4 759 49.7
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.1e-190 671.0 773 50.8
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 3.9e-180 636.0 548 61.1
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 9.0e-177 624.8 540 63.0
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 8.4e-175 618.2 774 47.4
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 6.7e-172 608.6 472 68.4
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 2.8e-162 576.6 505 60.4
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 2.4e-153 547.0 649 47.3
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.0e-151 541.6 540 53.5
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 4.2e-150 536.2 793 38.7
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 8.8e-140 501.9 425 59.3
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 1.2e-128 464.9 336 70.8
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 8.0e-125 452.2 489 51.3
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 6.7e-124 449.1 533 50.1
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 3.2e-118 430.3 329 68.7
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 3.4e-107 393.7 302 68.5
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 8.3e-106 389.0 289 69.6
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 3.3e-102 377.1 834 29.6
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 3.6e-101 373.6 399 53.9
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 6.8e-100 369.4 476 46.4
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.8e-97 361.3 218 83.9
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 4.4e-91 340.1 299 61.2
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 2.9e-90 337.4 299 61.5
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 2.0e-88 331.3 755 29.1
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 3.1e-84 317.4 345 46.1
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 1.3e-82 312.0 234 69.2
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 7.8e-80 302.8 177 86.4
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 6.6e-79 299.7 772 28.0
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 7.3e-78 296.2 248 69.8
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 4.9e-66 256.9 204 64.2
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 5.8e-59 233.4 666 26.7
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 6.2e-53 213.4 185 60.5
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 5.1e-47 193.7 251 46.6
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.7e-45 187.6 426 33.8
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.1e-44 184.5 417 34.1
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 2.5e-41 174.9 128 77.3
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 4.6e-40 170.6 150 64.0
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 8.2e-37 159.8 186 46.8
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 1.2e-27 129.4 138 53.6
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 1.4e-25 122.5 88 68.2
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.1e-24 118.6 89 65.2
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 6.1e-24 117.1 85 64.7
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 2.0e-19 102.1 306 27.8
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.6e-19 101.7 76 65.8
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.0e-18 99.8 245 33.1
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 1.9e-17 95.5 104 54.8
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.7e-15 87.0 68 61.8
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-11 75.5 111 34.2
Glyma.20G074700 Glycine max HOM05D004734 ORTHO05D213795 1.5e-06 59.3 45 68.9
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 2.0e-06 58.9 37 75.7
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 2.6e-06 58.5 131 29.8


User provided reference genes

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