Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 6.0e-132 474.2 238 100.0
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 7.1e-125 450.7 238 95.0
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 6.0e-124 447.6 238 94.5
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 2.3e-123 445.7 238 94.1
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 5.3e-120 434.5 238 89.5
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 7.0e-96 354.4 238 72.3
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 3.8e-94 348.6 238 71.4
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 3.8e-86 322.0 238 71.8
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 2.1e-76 289.7 244 59.8
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 2.7e-76 289.3 242 58.3
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 2.7e-71 272.7 243 55.1
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 4.5e-71 271.9 242 59.9
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 3.8e-70 268.9 244 55.3
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 5.0e-70 268.5 244 58.2
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 1.5e-69 266.9 244 54.9
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 4.2e-69 265.4 243 56.0
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 6.8e-67 258.1 244 54.1
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 1.2e-66 257.3 243 52.7
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 3.4e-66 255.8 171 75.4
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 5.7e-66 255.0 241 52.7
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 2.2e-65 253.1 243 53.5
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 2.8e-65 252.7 243 54.3
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 9.2e-64 247.7 243 52.3
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 4.5e-63 245.4 243 51.4
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 7.8e-63 244.6 241 51.5
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 1.3e-62 243.8 243 51.9
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 1.7e-62 243.4 242 51.7
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 6.6e-62 241.5 244 50.4
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 8.6e-62 241.1 242 51.2
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 1.9e-61 240.0 243 51.0
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 5.6e-61 238.4 243 49.4
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 4.7e-60 235.3 244 50.8
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 1.8e-59 233.4 247 49.0
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 2.3e-59 233.0 247 49.4
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 4.0e-59 232.3 242 47.5
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 5.2e-59 231.9 240 52.1
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 6.8e-59 231.5 245 50.6
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 8.9e-59 231.1 243 51.4
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 3.4e-58 229.2 242 47.5
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 9.8e-58 227.6 243 47.7
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 2.9e-57 226.1 243 46.9
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 6.4e-57 224.9 240 48.3
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 8.3e-57 224.6 243 47.7
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 1.9e-56 223.4 243 49.0
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 3.2e-56 222.6 242 46.3
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 4.1e-56 222.2 243 46.5
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 7.0e-56 221.5 246 48.8
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 1.6e-55 220.3 233 49.8
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 3.5e-55 219.2 243 44.9
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 3.5e-55 219.2 243 45.7
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 1.0e-54 217.6 236 50.4
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 1.3e-54 217.2 245 46.1
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 1.7e-54 216.9 246 48.8
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 1.7e-54 216.9 242 48.3
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 1.7e-54 216.9 241 46.5
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 2.3e-54 216.5 243 46.9
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 3.0e-54 216.1 242 46.7
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 3.9e-54 215.7 243 47.7
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 5.0e-54 215.3 243 44.0
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 5.0e-54 215.3 243 46.9
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 5.0e-54 215.3 243 46.9
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 8.6e-54 214.5 242 46.7
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 1.9e-53 213.4 292 41.1
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 9.5e-53 211.1 245 44.9
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 1.2e-52 210.7 243 46.9
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 1.2e-52 210.7 243 46.9
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 1.6e-52 210.3 243 48.1
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 3.6e-52 209.1 240 44.6
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 1.4e-51 207.2 266 43.6
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 5.2e-51 205.3 218 48.6
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 2.6e-50 203.0 223 47.1
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 3.7e-49 199.1 202 51.5
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 1.1e-48 197.6 240 43.8
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 7.0e-48 194.9 240 42.5
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 9.2e-48 194.5 189 54.0
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 2.3e-46 189.9 169 57.4
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 1.1e-45 187.6 241 41.9
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 2.5e-45 186.4 247 44.9
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 1.2e-44 184.1 246 43.5
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 1.1e-43 181.0 240 41.7
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 2.3e-43 179.9 247 44.1
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 4.4e-42 175.6 201 46.3
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 1.3e-41 174.1 206 45.6
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 2.9e-41 172.9 249 42.2
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 6.4e-41 171.8 184 48.4
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 8.3e-41 171.4 249 41.8
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.4e-40 170.6 249 41.4
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 1.0e-38 164.5 175 50.9
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 8.6e-38 161.4 239 36.0
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 1.5e-37 160.6 241 36.1
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 2.5e-37 159.8 174 45.4
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 2.1e-36 156.8 251 39.4
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 4.2e-32 142.5 202 38.6
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 4.6e-31 139.0 165 44.2
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 1.5e-29 134.0 238 34.9
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 9.6e-29 131.3 69 89.9
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 4.7e-28 129.0 240 34.2
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 2.2e-25 120.2 245 32.7
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 3.4e-18 96.3 91 51.6
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 1.0e-09 68.2 77 44.2
Ah.10g032600 Amaranthus hybridus HOM05D007471 ORTHO05D009481 2.1e-07 60.5 66 47.0
Lsat_1_v5_gn_3_93600 Lactuca sativa HOM05D007471 ORTHO05D233800 3.0e-06 56.6 90 37.8
MBI14_g37361_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 3.9e-06 56.2 57 49.1


User provided reference genes

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