Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 3.9e-180 634.8 348 100.0
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 2.0e-128 463.0 365 72.9
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 6.6e-87 325.1 212 82.5
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 6.6e-87 325.1 212 82.5
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 6.2e-61 238.8 213 63.4
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 3.9e-47 193.0 238 49.6
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.8e-39 167.5 200 53.5
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 5.1e-39 166.0 350 36.9
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 1.5e-38 164.5 207 47.8
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 3.1e-36 156.8 211 48.3
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.0e-34 151.8 177 51.4
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 3.8e-34 149.8 236 43.6
FAN14G3646 Fragaria x ananassa HOM05D003268 ORTHO05D209592 7.2e-33 145.6 86 86.0
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 9.4e-33 145.2 206 47.6
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 3.6e-32 143.3 212 42.5
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 3.6e-32 143.3 163 53.4
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 4.6e-32 142.9 170 48.2
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 4.6e-32 142.9 195 46.7
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 6.1e-32 142.5 220 44.1
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 7.9e-32 142.1 158 53.8
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 7.9e-32 142.1 188 47.3
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 8.8e-31 138.7 182 47.8
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 2.0e-30 137.5 161 49.1
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 2.6e-30 137.1 179 48.0
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 4.4e-30 136.3 188 46.3
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 5.7e-30 136.0 181 48.1
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 5.7e-30 136.0 172 49.4
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 1.7e-29 134.4 171 47.4
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 2.8e-29 133.7 189 48.1
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 2.8e-29 133.7 193 42.5
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 4.8e-29 132.9 215 41.9
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 6.3e-29 132.5 228 45.2
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 6.3e-29 132.5 228 45.2
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 1.4e-28 131.3 182 46.7
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 1.4e-28 131.3 165 49.1
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.4e-28 130.6 192 41.1
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 4.1e-28 129.8 213 43.2
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 4.1e-28 129.8 168 47.0
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 6.9e-28 129.0 184 48.4
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 9.1e-28 128.6 178 48.3
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 9.1e-28 128.6 171 46.2
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 1.5e-27 127.9 164 45.7
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 1.5e-27 127.9 189 41.8
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 3.4e-27 126.7 185 43.8
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 4.5e-27 126.3 171 45.6
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 4.5e-27 126.3 171 45.6
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 5.9e-27 125.9 218 40.4
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 1.0e-26 125.2 169 46.7
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 1.7e-26 124.4 205 39.5
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 1.7e-26 124.4 209 39.2
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 2.2e-26 124.0 181 42.5
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 2.9e-26 123.6 196 43.4
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 3.8e-26 123.2 205 41.0
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 6.5e-26 122.5 190 42.6
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 6.5e-26 122.5 190 42.6
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 1.1e-25 121.7 217 38.7
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 1.1e-25 121.7 217 38.7
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.1e-25 121.7 171 43.9
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 1.1e-25 121.7 171 43.9
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.4e-25 121.3 190 42.1
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.9e-25 120.9 188 41.5
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.9e-25 120.9 185 40.5
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 2.5e-25 120.6 208 38.0
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 2.5e-25 120.6 208 38.0
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 2.5e-25 120.6 166 49.4
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 2.5e-25 120.6 193 42.0
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 2.5e-25 120.6 175 41.1
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 2.5e-25 120.6 175 41.1
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 3.2e-25 120.2 194 41.8
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 7.2e-25 119.0 194 42.8
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 9.4e-25 118.6 176 39.2
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 9.4e-25 118.6 196 40.8
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 1.2e-24 118.2 183 42.1
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 1.2e-24 118.2 221 37.6
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 1.2e-24 118.2 221 37.6
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.2e-24 118.2 171 43.3
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 2.1e-24 117.5 186 40.3
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 2.7e-24 117.1 198 38.4
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 3.6e-24 116.7 185 41.6
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 3.6e-24 116.7 167 41.3
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 4.7e-24 116.3 175 39.4
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 4.7e-24 116.3 229 37.1
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 6.1e-24 115.9 196 41.8
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 6.1e-24 115.9 193 39.9
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 7.9e-24 115.5 187 40.1
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 7.9e-24 115.5 170 39.4
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 1.4e-23 114.8 184 44.0
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 2.3e-23 114.0 214 38.3
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 3.0e-23 113.6 185 41.6
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 3.0e-23 113.6 203 40.4
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 3.9e-23 113.2 173 39.9
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 5.2e-23 112.8 193 39.9
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 6.7e-23 112.5 160 41.9
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 8.8e-23 112.1 193 38.9
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 8.8e-23 112.1 182 37.9
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 1.5e-22 111.3 213 40.8
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 2.0e-22 110.9 164 42.7
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 2.0e-22 110.9 185 37.8
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 2.6e-22 110.5 200 38.5
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 4.4e-22 109.8 208 37.0
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 7.4e-22 109.0 206 36.9
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 7.4e-22 109.0 161 46.6
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 7.4e-22 109.0 193 38.9
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 7.4e-22 109.0 180 38.9
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 7.4e-22 109.0 185 36.2
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 7.4e-22 109.0 159 43.4
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 9.7e-22 108.6 193 40.9
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 1.3e-21 108.2 186 39.2
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.3e-21 108.2 173 38.2
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 1.7e-21 107.8 182 36.8
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 2.2e-21 107.5 220 36.8
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 2.8e-21 107.1 159 43.4
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 2.8e-21 107.1 170 42.4
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 3.7e-21 106.7 176 42.0
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 6.3e-21 105.9 177 39.5
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 6.3e-21 105.9 196 37.8
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 8.2e-21 105.5 194 40.7
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 1.1e-20 105.1 195 39.5
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 1.8e-20 104.4 151 41.1
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 1.8e-20 104.4 181 42.0
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 1.8e-20 104.4 195 36.9
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 3.1e-20 103.6 198 39.4
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 3.1e-20 103.6 167 39.5
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 4.1e-20 103.2 179 37.4
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 5.3e-20 102.8 183 39.3
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 7.0e-20 102.4 161 39.8
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 1.2e-19 101.7 179 37.4
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 2.0e-19 100.9 191 35.1
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 2.6e-19 100.5 183 39.9
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 3.5e-19 100.1 154 38.3
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 3.5e-19 100.1 154 38.3
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 4.5e-19 99.8 188 37.8
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 1.3e-18 98.2 159 39.0
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 2.2e-18 97.4 132 44.7
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 5.0e-18 96.3 176 39.2
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 5.0e-18 96.3 157 41.4
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 6.5e-18 95.9 185 39.5
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 6.5e-18 95.9 190 38.4
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 8.5e-18 95.5 133 43.6
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 8.5e-18 95.5 195 35.9
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 1.1e-17 95.1 172 36.0
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.1e-17 95.1 193 36.8
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 1.5e-17 94.7 207 33.3
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 2.5e-17 94.0 186 34.9
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 3.2e-17 93.6 134 43.3
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 4.2e-17 93.2 171 35.7
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 4.2e-17 93.2 183 36.1
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 4.2e-17 93.2 171 35.1
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 9.4e-17 92.0 173 35.8
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 1.2e-16 91.7 152 36.2
BcaC07g38513 Brassica carinata HOM05D003268 ORTHO05D003719 1.6e-16 91.3 186 37.1
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.6e-16 91.3 182 31.9
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 2.7e-16 90.5 189 33.9
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 4.7e-16 89.7 188 35.1
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 1.0e-15 88.6 194 30.9
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 2.3e-15 87.4 192 33.9
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 2.3e-15 87.4 186 31.2
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 3.0e-15 87.0 198 34.3
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 3.0e-15 87.0 84 47.6
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 4.0e-15 86.7 177 35.6
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 4.0e-15 86.7 196 29.6
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 4.0e-15 86.7 161 39.8
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 5.2e-15 86.3 176 33.5
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 5.2e-15 86.3 154 38.3
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 8.8e-15 85.5 176 34.7
Lj4g0025064 Lotus japonicus HOM05D003268 ORTHO05D003719 2.0e-14 84.3 187 37.4
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 3.3e-14 83.6 120 39.2
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 3.3e-14 83.6 154 37.0
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 3.3e-14 83.6 201 33.3
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 5.7e-14 82.8 172 35.5
FvH4_6g08441 Fragaria vesca HOM05D000017 ORTHO05D000013 9.7e-14 82.0 47 87.2
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 8.2e-13 79.0 192 38.5
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 1.4e-12 78.2 186 30.6
Actinidia17741 Actinidia chinensis HOM05D003268 ORTHO05D003719 7.0e-12 75.9 118 42.4
Os05g0277200 Oryza sativa ssp. japonica HOM05D003268 ORTHO05D003719 2.0e-11 74.3 215 31.6
RcHm_v2.0_Chr3g0458421 Rosa chinensis HOM05D000017 ORTHO05D000013 7.7e-11 72.4 47 80.9
Aa31LG1G5600 Aethionema arabicum HOM05D003268 ORTHO05D003719 1.7e-10 71.2 109 45.9
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 3.8e-10 70.1 181 30.4
Zm00001eb417400 Zea mays HOM05D003268 ORTHO05D003719 6.5e-10 69.3 151 34.4
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 1.1e-09 68.6 173 30.1
Lsat_1_v5_gn_9_82161 Lactuca sativa HOM05D050257 ORTHO05D003719 3.2e-09 67.0 166 30.1
BcaC07g41877 Brassica carinata HOM05D003268 ORTHO05D003719 1.2e-08 65.1 198 31.3
Os05g0136100 Oryza sativa ssp. japonica HOM05D003268 ORTHO05D003719 2.1e-08 64.3 129 35.7
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 5.7e-06 56.2 169 29.0


User provided reference genes

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