Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1272 Fragaria x ananassa HOM05D006298 ORTHO05D008167 8.5e-131 470.3 232 100.0
FAN02G1782 Fragaria x ananassa HOM05D006298 ORTHO05D008167 2.2e-126 455.7 232 97.0
FAN05G1999 Fragaria x ananassa HOM05D006298 ORTHO05D008167 8.2e-126 453.8 232 97.0
FAN05G2800 Fragaria x ananassa HOM05D006298 ORTHO05D008167 8.2e-126 453.8 232 97.0
FvH4_6g16470 Fragaria vesca HOM05D006298 ORTHO05D008167 1.0e-123 446.8 232 95.7
FAN14G4061 Fragaria x ananassa HOM05D006298 ORTHO05D008167 1.0e-123 446.8 232 95.7
RcHm_v2.0_Chr3g0470361 Rosa chinensis HOM05D006298 ORTHO05D008167 1.1e-119 433.3 235 93.2
Prupe.7G128900 Prunus persica HOM05D006298 ORTHO05D008167 3.0e-104 382.1 241 82.6
MD04G1092500 Malus domestica HOM05D006298 ORTHO05D008167 3.5e-100 368.6 244 80.3
PGR142G1273 Punica granatum HOM05D006298 ORTHO05D008167 8.6e-91 337.4 247 73.3
Cfa017623 Carpinus fangiana HOM05D006298 ORTHO05D008167 1.2e-89 333.6 241 75.5
ClCG10G020070 Citrullus lanatus HOM05D006298 ORTHO05D008167 2.8e-89 332.4 243 72.4
QL07p043135 Quercus lobata HOM05D006298 ORTHO05D008167 3.6e-89 332.0 238 73.9
Phvul.007G147500 Phaseolus vulgaris HOM05D006298 ORTHO05D008167 1.5e-87 326.6 238 72.3
VMungo0720G2332 Vigna mungo HOM05D006298 ORTHO05D008167 1.5e-87 326.6 240 72.1
GSVIVG01033647001 Vitis vinifera HOM05D006298 ORTHO05D008167 1.5e-87 326.6 239 72.0
Sabra16G0098900 Salix brachista HOM05D006298 ORTHO05D008167 5.7e-87 324.7 241 72.2
TAR623G0635 Trochodendron aralioides HOM05D006298 ORTHO05D008167 9.8e-87 323.9 246 70.3
Lj4g0025039 Lotus japonicus HOM05D006298 ORTHO05D008167 3.7e-86 322.0 245 71.8
COL.COLO4_26951 Corchorus olitorius HOM05D006298 ORTHO05D008167 4.9e-86 321.6 242 72.3
CsaV3_3G036020 Cucumis sativus L. HOM05D006298 ORTHO05D008167 4.9e-86 321.6 240 71.2
Rhsim03G0091000 Rhododendron simsii HOM05D006298 ORTHO05D008167 1.4e-85 320.1 244 71.7
CSS0011355 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 2.4e-85 319.3 247 70.0
Haze_20529 Corylus avellana HOM05D006298 ORTHO05D008167 2.4e-85 319.3 261 69.0
CSS0035285 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 4.1e-85 318.5 251 68.9
Gohir.D01G130400 Gossypium hirsutum HOM05D006298 ORTHO05D008167 4.1e-85 318.5 241 70.5
Gorai.002G161800 Gossypium raimondii HOM05D006298 ORTHO05D008167 4.1e-85 318.5 241 70.5
Sed0010557 Sechium edule HOM05D006298 ORTHO05D008167 4.1e-85 318.5 238 73.5
CiPaw.09G171800 Carya illinoinensis HOM05D006298 ORTHO05D008167 7.0e-85 317.8 241 73.4
Eucgr.K02926 Eucalyptus grandis HOM05D006298 ORTHO05D008167 3.5e-84 315.5 244 69.3
Oeu053684.1 Olea europaea HOM05D006298 ORTHO05D008167 3.5e-84 315.5 252 69.0
Cpa.g.sc102.32 Carica papaya HOM05D006298 ORTHO05D008167 5.9e-84 314.7 239 72.0
Gohir.A01G141763 Gossypium hirsutum HOM05D006298 ORTHO05D008167 5.9e-84 314.7 241 70.1
Actinidia08768 Actinidia chinensis HOM05D006298 ORTHO05D008167 1.3e-83 313.5 248 68.5
Manes.08G011200 Manihot esculenta HOM05D006298 ORTHO05D008167 1.3e-83 313.5 246 69.9
Potri.016G099300 Populus trichocarpa HOM05D006298 ORTHO05D008167 1.3e-83 313.5 241 70.1
Thecc.05G068100 Theobroma cacao HOM05D006298 ORTHO05D008167 1.7e-83 313.2 218 74.8
Ca_11509_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 3.9e-83 312.0 240 69.2
SGA_v2.0_scaffold40G15525 Striga asiatica HOM05D006298 ORTHO05D008167 3.3e-82 308.9 246 68.7
THA.LOC104807061 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 3.3e-82 308.9 235 68.5
Hma1.2p1_0205F.1_g086920 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 4.3e-82 308.5 239 68.2
Aqoxy1G01145 Aquilegia oxysepala HOM05D006298 ORTHO05D008167 9.5e-82 307.4 252 67.1
Glyma.10G054900 Glycine max HOM05D006298 ORTHO05D008167 2.8e-81 305.8 236 66.9
Cc06_g04290 Coffea canephora HOM05D006298 ORTHO05D008167 3.6e-81 305.4 233 69.1
DCAR_017674 Daucus carota HOM05D006298 ORTHO05D008167 3.6e-81 305.4 248 68.1
TPR.G11270 Trifolium pratense HOM05D006298 ORTHO05D008167 3.6e-81 305.4 241 67.2
Migut.J00651 Erythranthe guttata HOM05D006298 ORTHO05D008167 1.1e-80 303.9 246 66.7
Duzib106G2039 Durio zibethinus HOM05D006298 ORTHO05D008167 1.8e-80 303.1 195 77.9
TWI53G1706 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 4.0e-80 302.0 238 68.9
Ciclev10012651m.g Citrus clementina HOM05D006298 ORTHO05D008167 6.8e-80 301.2 203 76.8
CANSAT80G2892 Cannabis sativa HOM05D006298 ORTHO05D008167 8.9e-80 300.8 236 69.1
Glyma.13G142000 Glycine max HOM05D006298 ORTHO05D008167 1.2e-79 300.4 239 65.3
Psat6g073640 Pisum sativum HOM05D006298 ORTHO05D008167 4.4e-79 298.5 187 77.0
TWI77G0409 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 7.5e-79 297.7 239 68.6
THA.LOC104805233 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 2.9e-78 295.8 271 62.0
Actinidia28907 Actinidia chinensis HOM05D006298 ORTHO05D008167 4.9e-78 295.0 290 59.7
Aa31LG5G22130 Aethionema arabicum HOM05D006298 ORTHO05D008167 8.3e-78 294.3 240 65.0
Lalb_Chr21g0315031 Lupinus albus HOM05D006298 ORTHO05D008167 1.1e-77 293.9 193 76.2
arahy.Tifrunner.gnm1.ann1.GSM08A Arachis hypogaea HOM05D006298 ORTHO05D008167 1.4e-77 293.5 241 68.9
arahy.Tifrunner.gnm1.ann1.UZM884 Arachis hypogaea HOM05D006298 ORTHO05D008167 1.4e-77 293.5 241 68.9
PSO339G0145 Papaver somniferum HOM05D006298 ORTHO05D008167 1.4e-77 293.5 246 65.0
Lj2A120T46 Lonicera japonica HOM05D006298 ORTHO05D008167 1.9e-77 293.1 246 65.4
HPP92_022584 Vanilla planifolia HOM05D006298 ORTHO05D008167 1.9e-77 293.1 240 64.6
PSO063G5537 Papaver somniferum HOM05D006298 ORTHO05D008167 4.6e-76 288.5 247 64.8
Thhalv10017183m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 7.8e-76 287.7 238 66.0
Sp4g19190 Schrenkiella parvula HOM05D006298 ORTHO05D008167 7.8e-76 287.7 235 65.1
EL10Ac7g16640 Beta vulgaris HOM05D006298 ORTHO05D008167 1.7e-75 286.6 256 62.9
ATR0219G012 Amborella trichopoda HOM05D006298 ORTHO05D008167 3.9e-75 285.4 245 63.7
Carub.0004s1875 Capsella rubella HOM05D006298 ORTHO05D008167 3.3e-74 282.3 241 62.7
BcaB06g28958 Brassica carinata HOM05D006298 ORTHO05D008167 4.3e-74 282.0 233 64.4
CDE03G0133 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 4.3e-74 282.0 231 62.3
vmacro07297 Vaccinium macrocarpon HOM05D006298 ORTHO05D008167 7.3e-74 281.2 198 73.2
A04p28210 Brassica napus HOM05D006298 ORTHO05D008167 9.5e-74 280.8 239 63.6
C04p65570 Brassica napus HOM05D006298 ORTHO05D008167 9.5e-74 280.8 239 63.6
Os03g0152600 Oryza sativa ssp. japonica HOM05D006298 ORTHO05D008167 1.2e-73 280.4 222 65.3
Peaxi162Scf00311g01110 Petunia axillaris HOM05D006298 ORTHO05D008167 2.1e-73 279.6 240 63.8
BraA04t18305Z Brassica rapa HOM05D006298 ORTHO05D008167 2.8e-73 279.3 239 63.6
CDE04G2630 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 2.8e-73 279.3 211 66.4
BolC4t28046H Brassica oleracea HOM05D006298 ORTHO05D008167 4.7e-73 278.5 239 63.2
Sopen10g033440 Solanum pennellii HOM05D006298 ORTHO05D008167 4.7e-73 278.5 201 68.2
PGSC0003DMG400028288 Solanum tuberosum HOM05D006298 ORTHO05D008167 4.7e-73 278.5 200 68.5
Nitab4.5_0000063g0130 Nicotiana tabacum HOM05D006298 ORTHO05D008167 6.2e-73 278.1 198 69.2
Sc20g0005540 Simmondsia chinensis HOM05D006298 ORTHO05D008167 6.2e-73 278.1 243 60.5
Lsat_1_v5_gn_1_51681 Lactuca sativa HOM05D006298 ORTHO05D008167 8.1e-73 277.7 240 62.9
Solyc10g083990.2 Solanum lycopersicum HOM05D006298 ORTHO05D008167 8.1e-73 277.7 201 68.2
HanXRQChr11g0350481 Helianthus annuus HOM05D006298 ORTHO05D008167 1.8e-72 276.6 239 62.8
Nitab4.5_0000814g0050 Nicotiana tabacum HOM05D006298 ORTHO05D008167 2.3e-72 276.2 237 62.9
BcaC02g07571 Brassica carinata HOM05D006298 ORTHO05D008167 3.1e-72 275.8 239 62.8
AUR62040336 Chenopodium quinoa HOM05D006298 ORTHO05D008167 8.9e-72 274.2 198 68.7
Atru.BG.206.p Acer truncatum HOM05D006298 ORTHO05D008167 1.2e-71 273.9 160 80.6
AT2G36895 Arabidopsis thaliana HOM05D006298 ORTHO05D008167 1.7e-70 270.0 267 57.7
AUR62042070 Chenopodium quinoa HOM05D006298 ORTHO05D008167 1.9e-69 266.5 243 60.9
AUR62044331 Chenopodium quinoa HOM05D006298 ORTHO05D008167 1.9e-69 266.5 243 60.9
MBI18_g02636_MAGBIO Magnolia biondii HOM05D006298 ORTHO05D008167 4.1e-69 265.4 290 54.1
Ah.08g211590 Amaranthus hybridus HOM05D006298 ORTHO05D008167 8.6e-67 257.7 227 59.0
AL4G33120 Arabidopsis lyrata HOM05D006298 ORTHO05D008167 3.8e-62 242.3 236 57.6
Nn6g35281 Nelumbo nucifera HOM05D006298 ORTHO05D008167 3.8e-62 242.3 126 91.3
ECA248G3050 Erigeron canadensis HOM05D006298 ORTHO05D008167 4.1e-61 238.8 172 69.2
SMO119G0246 Selaginella moellendorffii HOM05D006298 ORTHO05D008167 4.3e-58 228.8 190 59.5
Duzib093G1320 Durio zibethinus HOM05D006298 ORTHO05D008167 9.6e-58 227.6 237 56.1
Mapoly0063s0087 Marchantia polymorpha HOM05D006298 ORTHO05D008167 1.8e-56 223.4 182 62.6
Pp3c6_17550 Physcomitrium patens HOM05D006298 ORTHO05D008167 3.4e-55 219.2 184 62.5
AUR62042510 Chenopodium quinoa HOM05D006298 ORTHO05D008167 3.8e-54 215.7 238 55.9
unitig_26.g9235 Utricularia gibba HOM05D006298 ORTHO05D008167 1.4e-53 213.8 126 79.4
Atru.chr8.1795 Acer truncatum HOM05D006298 ORTHO05D008167 2.4e-53 213.0 110 90.9
Dinv35789 Davidia involucrata HOM05D006298 ORTHO05D008167 2.5e-50 203.0 190 62.6
Medtr1g063100 Medicago truncatula HOM05D006298 ORTHO05D008167 5.6e-50 201.8 187 61.5
SEGI_37587 Sequoiadendron giganteum HOM05D006298 ORTHO05D008167 2.6e-47 193.0 131 71.0
Zm00001eb403160 Zea mays HOM05D006298 ORTHO05D008167 6.4e-46 188.3 176 58.0
BcaC02g07569 Brassica carinata HOM05D006298 ORTHO05D008167 3.7e-41 172.6 192 54.7
CARHR131360 Cardamine hirsuta HOM05D006298 ORTHO05D008167 2.9e-38 162.9 90 83.3
Hma1.2p1_0205F.1_g086930 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 4.3e-34 149.1 150 58.0
AagrBONN_evm.TU.Sc2ySwM_228.4347 Anthoceros agrestis HOM05D006298 ORTHO05D008167 2.2e-30 136.7 113 57.5
CBR_g45378 Chara braunii HOM05D006298 ORTHO05D008167 2.1e-28 130.2 91 69.2
Cre11.g469100 Chlamydomonas reinhardtii HOM05D006298 ORTHO05D008167 2.7e-28 129.8 150 48.7
Thhalv10000465m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 2.8e-25 119.8 96 66.7
Medtr6g035275 Medicago truncatula HOM05D006298 ORTHO05D008167 3.2e-21 106.3 54 92.6
MD12G1110600 Malus domestica HOM05D006298 ORTHO05D008167 7.2e-21 105.1 49 95.9
BcaB01g03809 Brassica carinata HOM05D006298 ORTHO05D008167 1.4e-16 90.9 91 49.5
BcaC04g19302 Brassica carinata HOM05D006298 ORTHO05D008167 6.9e-16 88.6 56 75.0
Ca_27221_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 1.7e-14 84.0 65 66.2
BcaC02g07570 Brassica carinata HOM05D006298 ORTHO05D008167 1.2e-12 77.8 38 84.2
Prupe.4G234300 Prunus persica HOM05D006298 ORTHO05D007008 9.1e-08 61.6 39 74.4
arahy.Tifrunner.gnm1.ann1.31G0Q2 Arachis hypogaea HOM05D006298 ORTHO05D082484 2.0e-07 60.5 34 79.4
Ca_27663_v3 Cicer arietinum L. HOM05D002033 ORTHO05D002181 3.4e-07 59.7 35 77.1


User provided reference genes

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