Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1263 Fragaria x ananassa HOM05D002542 ORTHO05D012505 6.4e-64 247.3 127 100.0
FAN18G1778 Fragaria x ananassa HOM05D002542 ORTHO05D012505 9.6e-52 206.8 105 99.0
FAN28G1798 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.1e-47 193.4 127 85.0
FAN27G1131 Fragaria x ananassa HOM05D002542 ORTHO05D012505 3.6e-43 178.3 109 87.2
FAN05G1732 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.5e-41 172.9 127 76.4
FAN14G4235 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.5e-41 172.9 127 76.4
FAN21G0987 Fragaria x ananassa HOM05D002542 ORTHO05D012505 4.5e-41 171.4 127 75.6
FAN12G1957 Fragaria x ananassa HOM05D002542 ORTHO05D012505 8.4e-40 167.2 127 74.0
FAN15G3150 Fragaria x ananassa HOM05D002542 ORTHO05D012505 2.1e-35 152.5 105 80.0
FAN07G1065 Fragaria x ananassa HOM05D002542 ORTHO05D012505 2.9e-32 142.1 75 97.3
FvH4_5g11310 Fragaria vesca HOM05D002542 ORTHO05D012505 5.5e-31 137.9 113 70.8
FAN15G0815 Fragaria x ananassa HOM05D002542 ORTHO05D012505 7.9e-30 134.0 127 65.4
FAN25G0160 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.1e-28 130.2 65 100.0
FAN19G2349 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.3e-27 126.7 65 98.5
FAN01G1158 Fragaria x ananassa HOM05D002542 ORTHO05D012505 2.4e-26 122.5 105 68.6
FAN22G1401 Fragaria x ananassa HOM05D002542 ORTHO05D012505 3.1e-26 122.1 119 63.9
FvH4_3g43310 Fragaria vesca HOM05D002542 ORTHO05D005078 6.9e-26 120.9 65 93.8
FAN11G0849 Fragaria x ananassa HOM05D002542 ORTHO05D005078 6.9e-26 120.9 65 93.8
FAN20G2271 Fragaria x ananassa HOM05D002542 ORTHO05D012505 6.9e-26 120.9 105 67.6
FAN27G1763 Fragaria x ananassa HOM05D002542 ORTHO05D012505 6.9e-26 120.9 105 67.6
FAN25G0516 Fragaria x ananassa HOM05D002542 ORTHO05D005078 9.0e-26 120.6 65 92.3
RcHm_v2.0_Chr5g0077371 Rosa chinensis HOM05D002542 ORTHO05D005078 1.5e-25 119.8 65 92.3
FAN16G1676 Fragaria x ananassa HOM05D002542 ORTHO05D005078 2.0e-25 119.4 65 92.3
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 7.6e-25 117.5 65 92.3
FAN28G1120 Fragaria x ananassa HOM05D002542 ORTHO05D012505 2.9e-24 115.5 105 65.7
MD11G1027800 Malus domestica HOM05D002542 ORTHO05D005078 2.5e-23 112.5 65 86.2
CANSAT56G4386 Cannabis sativa HOM05D002542 ORTHO05D005078 5.5e-23 111.3 65 84.6
Prupe.6G021800 Prunus persica HOM05D002542 ORTHO05D005078 5.5e-23 111.3 65 84.6
FvH4_2g07530 Fragaria vesca HOM05D002542 ORTHO05D012505 1.0e-21 107.1 65 84.6
ClCG02G023450 Citrullus lanatus HOM05D002542 ORTHO05D005078 1.9e-20 102.8 65 78.5
QL01p005723 Quercus lobata HOM05D002542 ORTHO05D005078 9.7e-20 100.5 70 70.0
MELO3C014617.2 Cucumis melo HOM05D002542 ORTHO05D005078 1.6e-19 99.8 65 76.9
CsaV3_4G024050 Cucumis sativus L. HOM05D002542 ORTHO05D005078 1.6e-19 99.8 65 76.9
Sed0011721 Sechium edule HOM05D002542 ORTHO05D005078 4.8e-19 98.2 65 73.8
TAR623G0073 Trochodendron aralioides HOM05D002542 ORTHO05D005078 6.3e-19 97.8 65 70.8
TAR636G0047 Trochodendron aralioides HOM05D002542 ORTHO05D005078 8.2e-19 97.4 65 72.3
TAR623G0292 Trochodendron aralioides HOM05D002542 ORTHO05D005078 1.8e-18 96.3 65 69.2
Eucgr.J00798 Eucalyptus grandis HOM05D002542 ORTHO05D005078 2.4e-18 95.9 65 69.2
Aqoxy1G00203 Aquilegia oxysepala HOM05D002542 ORTHO05D005078 5.3e-18 94.7 65 69.2
Dinv08045 Davidia involucrata HOM05D002542 ORTHO05D005078 6.9e-18 94.4 65 72.3
Nn2g15512 Nelumbo nucifera HOM05D002542 ORTHO05D005078 9.0e-18 94.0 65 70.8
Nn7g36091 Nelumbo nucifera HOM05D002542 ORTHO05D005078 9.0e-18 94.0 64 68.8
Oeu055810.1 Olea europaea HOM05D002542 ORTHO05D005078 9.0e-18 94.0 64 73.4
Oeu055812.1 Olea europaea HOM05D002542 ORTHO05D005078 9.0e-18 94.0 64 73.4
TAR369G0468 Trochodendron aralioides HOM05D002542 ORTHO05D005078 2.0e-17 92.8 65 67.7
Actinidia16301 Actinidia chinensis HOM05D002542 ORTHO05D005078 3.4e-17 92.0 66 69.7
Dinv36293 Davidia involucrata HOM05D002542 ORTHO05D005078 3.4e-17 92.0 64 70.3
Hma1.2p1_0728F.1_g209330 Hydrangea macrophylla HOM05D002542 ORTHO05D005078 5.9e-17 91.3 69 65.2
MBI01_g36438_MAGBIO Magnolia biondii HOM05D002542 ORTHO05D005078 1.3e-16 90.1 62 71.0
Peaxi162Scf00839g00235 Petunia axillaris HOM05D002542 ORTHO05D005078 1.7e-16 89.7 93 53.8
SalBow4G1692 Salvia bowleyana HOM05D002542 ORTHO05D005078 1.7e-16 89.7 64 71.9
SalBow4G1723 Salvia bowleyana HOM05D002542 ORTHO05D005078 1.7e-16 89.7 64 71.9
SGA_v2.0_scaffold3G01539 Striga asiatica HOM05D002542 ORTHO05D005078 1.7e-16 89.7 64 68.8
Lalb_Chr14g0372211 Lupinus albus HOM05D002542 ORTHO05D005078 2.2e-16 89.4 77 62.3
Atru.chr3.2552 Acer truncatum HOM05D002542 ORTHO05D005078 5.0e-16 88.2 71 63.4
Actinidia06880 Actinidia chinensis HOM05D002542 ORTHO05D005078 5.0e-16 88.2 66 66.7
MSTRG.17576 Avicennia marina HOM05D002542 ORTHO05D005078 5.0e-16 88.2 64 67.2
Thecc.09G226200 Theobroma cacao HOM05D002542 ORTHO05D005078 5.0e-16 88.2 71 64.8
arahy.Tifrunner.gnm1.ann1.SMM6ZV Arachis hypogaea HOM05D002542 ORTHO05D005078 6.5e-16 87.8 72 65.3
arahy.Tifrunner.gnm1.ann1.EPQ3BP Arachis hypogaea HOM05D002542 ORTHO05D005078 8.5e-16 87.4 72 65.3
Gohir.A09G115100 Gossypium hirsutum HOM05D002542 ORTHO05D005078 8.5e-16 87.4 67 62.7
Gohir.D09G111700 Gossypium hirsutum HOM05D002542 ORTHO05D005078 8.5e-16 87.4 67 62.7
Gorai.006G129500 Gossypium raimondii HOM05D002542 ORTHO05D005078 8.5e-16 87.4 67 62.7
Duzib170G1079 Durio zibethinus HOM05D002542 ORTHO05D005078 1.4e-15 86.7 65 64.6
Migut.N02300 Erythranthe guttata HOM05D002542 ORTHO05D005078 1.4e-15 86.7 64 62.5
PGR119G0847 Punica granatum HOM05D002542 ORTHO05D005078 1.4e-15 86.7 63 71.4
VMungo1127G1966 Vigna mungo HOM05D002542 ORTHO05D005078 1.4e-15 86.7 69 66.7
Duzib168G0207 Durio zibethinus HOM05D002542 ORTHO05D005078 1.9e-15 86.3 67 64.2
ECA233G4099 Erigeron canadensis HOM05D002542 ORTHO05D005078 1.9e-15 86.3 67 62.7
Nitab4.5_0002278g0060 Nicotiana tabacum HOM05D002542 ORTHO05D005078 1.9e-15 86.3 65 67.7
Solyc11g056620.3 Solanum lycopersicum HOM05D002542 ORTHO05D005078 1.9e-15 86.3 108 50.0
Ca_20579_v3 Cicer arietinum L. HOM05D002542 ORTHO05D005078 2.5e-15 85.9 69 66.7
Lsat_1_v5_gn_6_48640 Lactuca sativa HOM05D002542 ORTHO05D005078 2.5e-15 85.9 64 64.1
Psat5g288320 Pisum sativum HOM05D002542 ORTHO05D005078 2.5e-15 85.9 69 62.3
CiPaw.14G122700 Carya illinoinensis HOM05D002542 ORTHO05D005078 3.2e-15 85.5 76 56.6
COL.COLO4_24828 Corchorus olitorius HOM05D002542 ORTHO05D005078 3.2e-15 85.5 71 62.0
Phvul.011G057300 Phaseolus vulgaris HOM05D002542 ORTHO05D005078 3.2e-15 85.5 69 65.2
Sopen11g023360 Solanum pennellii HOM05D002542 ORTHO05D005078 3.2e-15 85.5 68 70.6
CSS0032394 Camellia sinensis var. sinensis HOM05D002542 ORTHO05D005078 5.5e-15 84.7 72 63.9
DCAR_002044 Daucus carota HOM05D002542 ORTHO05D005078 5.5e-15 84.7 65 66.2
Duzib150G1060 Durio zibethinus HOM05D002542 ORTHO05D005078 5.5e-15 84.7 67 64.2
Nitab4.5_0000175g0060 Nicotiana tabacum HOM05D002542 ORTHO05D005078 5.5e-15 84.7 65 66.2
Cfa009716 Carpinus fangiana HOM05D002542 ORTHO05D005078 7.2e-15 84.3 76 60.5
HanXRQChr13g0404001 Helianthus annuus HOM05D002542 ORTHO05D005078 7.2e-15 84.3 62 66.1
THA.LOC104799095 Tarenaya hassleriana HOM05D002542 ORTHO05D005078 9.4e-15 84.0 68 63.2
Lj3g0023719 Lotus japonicus HOM05D002542 ORTHO05D005078 1.2e-14 83.6 69 65.2
Manes.06G167900 Manihot esculenta HOM05D002542 ORTHO05D005078 1.2e-14 83.6 78 53.8
Medtr2g098340 Medicago truncatula HOM05D002542 ORTHO05D005078 1.2e-14 83.6 69 62.3
CiPaw.13G164700 Carya illinoinensis HOM05D002542 ORTHO05D005078 1.6e-14 83.2 76 57.9
Glyma.11G131000 Glycine max HOM05D002542 ORTHO05D005078 1.6e-14 83.2 69 63.8
Gohir.A07G125700 Gossypium hirsutum HOM05D002542 ORTHO05D005078 1.6e-14 83.2 67 59.7
Migut.D00566 Erythranthe guttata HOM05D002542 ORTHO05D005078 2.1e-14 82.8 67 64.2
Gohir.D07G129901 Gossypium hirsutum HOM05D002542 ORTHO05D005078 2.1e-14 82.8 67 58.2
Gorai.001G140400 Gossypium raimondii HOM05D002542 ORTHO05D005078 2.1e-14 82.8 67 58.2
Potri.001G017000 Populus trichocarpa HOM05D002542 ORTHO05D005078 2.1e-14 82.8 70 60.0
TPR.G13667 Trifolium pratense HOM05D002542 ORTHO05D005078 2.1e-14 82.8 68 63.2
AL6G46900 Arabidopsis lyrata HOM05D002542 ORTHO05D005078 2.7e-14 82.4 68 60.3
AT4G12070 Arabidopsis thaliana HOM05D002542 ORTHO05D005078 2.7e-14 82.4 68 60.3
CARHR254160 Cardamine hirsuta HOM05D002542 ORTHO05D005078 2.7e-14 82.4 68 60.3
DCAR_029941 Daucus carota HOM05D002542 ORTHO05D005078 2.7e-14 82.4 65 60.0
Glyma.12G055300 Glycine max HOM05D002542 ORTHO05D005078 2.7e-14 82.4 69 63.8
Medtr4g065980 Medicago truncatula HOM05D002542 ORTHO05D005078 2.7e-14 82.4 70 60.0
Carub.0006s3119 Capsella rubella HOM05D002542 ORTHO05D005078 4.6e-14 81.6 68 58.8
Ciclev10015048m.g Citrus clementina HOM05D002542 ORTHO05D005078 6.1e-14 81.3 72 61.1
Cpa.g.sc84.91 Carica papaya HOM05D002542 ORTHO05D005078 7.9e-14 80.9 69 59.4
PSO339G0387 Papaver somniferum HOM05D002542 ORTHO05D005078 7.9e-14 80.9 67 58.2
PSO384G3896 Papaver somniferum HOM05D002542 ORTHO05D005078 7.9e-14 80.9 67 58.2
FAN11G1190 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.0e-13 80.5 42 95.2
Lj2A649G45 Lonicera japonica HOM05D002542 ORTHO05D005078 1.0e-13 80.5 65 63.1
TWI32G0526 Tripterygium wilfordii HOM05D002542 ORTHO05D005078 1.0e-13 80.5 68 60.3
Aa31LG9G10410 Aethionema arabicum HOM05D002542 ORTHO05D005078 1.4e-13 80.1 68 58.8
TPR.G40863 Trifolium pratense HOM05D002542 ORTHO05D005078 1.8e-13 79.7 68 57.4
arahy.Tifrunner.gnm1.ann1.YJX7RI Arachis hypogaea HOM05D002542 ORTHO05D005078 2.3e-13 79.3 69 56.5
BcaB05g23771 Brassica carinata HOM05D002542 ORTHO05D005078 2.3e-13 79.3 68 58.8
BcaC03g16313 Brassica carinata HOM05D002542 ORTHO05D005078 2.3e-13 79.3 68 58.8
A02p25930 Brassica napus HOM05D002542 ORTHO05D005078 2.3e-13 79.3 68 58.8
C02p41260 Brassica napus HOM05D002542 ORTHO05D005078 2.3e-13 79.3 68 58.8
BolC2t10148H Brassica oleracea HOM05D002542 ORTHO05D005078 2.3e-13 79.3 68 58.8
BraA02t07588Z Brassica rapa HOM05D002542 ORTHO05D005078 2.3e-13 79.3 68 58.8
Lj3g0008300 Lotus japonicus HOM05D002542 ORTHO05D005078 2.3e-13 79.3 69 63.8
Thhalv10028621m.g Eutrema salsugineum HOM05D002542 ORTHO05D005078 3.0e-13 79.0 68 57.4
Sp6g05430 Schrenkiella parvula HOM05D002542 ORTHO05D005078 3.0e-13 79.0 68 57.4
Phvul.L011143 Phaseolus vulgaris HOM05D002542 ORTHO05D005078 3.9e-13 78.6 66 62.1
Psat0s3083g0120 Pisum sativum HOM05D002542 ORTHO05D005078 3.9e-13 78.6 68 63.2
Sabra01G0011900 Salix brachista HOM05D002542 ORTHO05D005078 3.9e-13 78.6 70 58.6
VMungo1080G0873 Vigna mungo HOM05D002542 ORTHO05D005078 5.1e-13 78.2 66 62.1
BcaC04g21201 Brassica carinata HOM05D002542 ORTHO05D005078 8.8e-13 77.4 68 55.9
C09p34380 Brassica napus HOM05D002542 ORTHO05D005078 8.8e-13 77.4 68 55.9
BolC9t56280H Brassica oleracea HOM05D002542 ORTHO05D005078 8.8e-13 77.4 68 55.9
BraA09t38276Z Brassica rapa HOM05D002542 ORTHO05D005078 8.8e-13 77.4 68 55.9
Glyma.13G341900 Glycine max HOM05D002542 ORTHO05D005078 1.1e-12 77.0 68 60.3
Sabra03G0153100 Salix brachista HOM05D002542 ORTHO05D005078 1.1e-12 77.0 74 54.1
BcaB01g01717 Brassica carinata HOM05D002542 ORTHO05D005078 1.5e-12 76.6 68 54.4
Glyma.15G032400 Glycine max HOM05D002542 ORTHO05D005078 3.3e-12 75.5 68 57.4
Lalb_Chr03g0026231 Lupinus albus HOM05D002542 ORTHO05D005078 7.4e-12 74.3 68 60.3
Potri.003G207600 Populus trichocarpa HOM05D002542 ORTHO05D005078 7.4e-12 74.3 74 54.1
TWI34G0903 Tripterygium wilfordii HOM05D002542 ORTHO05D005078 1.3e-11 73.6 68 57.4
A09p27050 Brassica napus HOM05D002542 ORTHO05D005078 2.2e-11 72.8 69 55.1
CDE05G2289 Ceratophyllum demersum HOM05D002542 ORTHO05D005078 2.2e-11 72.8 62 54.8
CDE05G1246 Ceratophyllum demersum HOM05D002542 ORTHO05D005078 2.8e-11 72.4 62 54.8
DCAR_023758 Daucus carota HOM05D002542 ORTHO05D005078 2.8e-11 72.4 66 59.1
unitig_699.g19127 Utricularia gibba HOM05D002542 ORTHO05D005078 4.8e-11 71.6 66 56.1
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 1.4e-10 70.1 54 57.4
EL10Ac4g10309 Beta vulgaris HOM05D002542 ORTHO05D005078 1.8e-10 69.7 68 54.4
SEGI_41426 Sequoiadendron giganteum HOM05D002542 ORTHO05D005078 4.1e-10 68.6 70 44.3
PGR102G1632 Punica granatum HOM05D002542 ORTHO05D005078 6.9e-10 67.8 63 50.8
AUR62019257 Chenopodium quinoa HOM05D002542 ORTHO05D005078 1.5e-09 66.6 68 48.5
AUR62043579 Chenopodium quinoa HOM05D002542 ORTHO05D005078 1.5e-09 66.6 68 48.5
AUR62043684 Chenopodium quinoa HOM05D002542 ORTHO05D005078 1.5e-09 66.6 68 48.5
AUR62000085 Chenopodium quinoa HOM05D002542 ORTHO05D005078 2.6e-09 65.9 68 50.0
QL08p037542 Quercus lobata HOM05D000328 ORTHO05D000191 2.6e-09 65.9 50 62.0
Ah.06g193550 Amaranthus hybridus HOM05D002542 ORTHO05D005078 3.4e-09 65.5 68 50.0
Rhsim13G0224600 Rhododendron simsii HOM05D002542 ORTHO05D005078 1.9e-07 59.7 66 54.5
ATR0605G168 Amborella trichopoda HOM05D002542 ORTHO05D005078 2.5e-07 59.3 64 43.8
Zm00001eb316700 Zea mays HOM05D002542 ORTHO05D005078 2.5e-07 59.3 70 44.3
vmacro04178 Vaccinium macrocarpon HOM05D002542 ORTHO05D005078 2.7e-06 55.8 66 53.0
FvH4_5g38230 Fragaria vesca HOM05D004450 ORTHO05D005491 4.7e-06 55.1 26 100.0
FAN04G1322 Fragaria x ananassa HOM05D004450 ORTHO05D005491 4.7e-06 55.1 26 100.0
FAN08G3465 Fragaria x ananassa HOM05D004450 ORTHO05D005491 4.7e-06 55.1 26 100.0
FAN13G1849 Fragaria x ananassa HOM05D004450 ORTHO05D005491 4.7e-06 55.1 26 100.0
FAN18G0908 Fragaria x ananassa HOM05D004450 ORTHO05D005491 4.7e-06 55.1 26 100.0


User provided reference genes

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