Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.9e-37 158.7 79 100.0
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.2e-31 139.4 80 91.2
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-31 139.4 80 91.2
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-30 136.0 80 90.0
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-30 136.0 80 90.0
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 8.4e-30 133.3 79 83.5
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 1.8e-16 89.0 78 61.5
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 5.3e-16 87.4 81 60.5
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 2.0e-15 85.5 81 59.3
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 3.8e-14 81.3 94 51.1
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 6.4e-14 80.5 74 59.5
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 8.4e-14 80.1 80 53.8
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.9e-13 79.0 94 51.1
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 5.4e-13 77.4 80 50.0
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.2e-12 76.3 91 48.4
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.6e-12 75.9 90 47.8
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.5e-12 74.7 91 45.1
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.5e-12 74.7 90 50.0
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.0e-12 73.9 91 45.1
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.3e-11 72.8 56 57.1
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.8e-11 72.4 36 91.7
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.3e-11 72.0 81 48.1
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.3e-11 72.0 45 68.9
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.9e-11 71.2 93 50.5
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.1e-11 70.9 49 61.2
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 6.7e-11 70.5 83 49.4
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 8.7e-11 70.1 85 49.4
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 8.7e-11 70.1 85 49.4
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 8.7e-11 70.1 91 47.3
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 8.7e-11 70.1 90 50.0
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 1.1e-10 69.7 86 45.3
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.5e-10 69.3 81 48.1
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.5e-10 69.3 49 61.2
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.5e-10 69.3 97 45.4
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.9e-10 68.9 78 47.4
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 2.5e-10 68.6 85 47.1
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 2.5e-10 68.6 88 45.5
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.3e-10 68.2 95 45.3
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 4.3e-10 67.8 94 47.9
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 5.6e-10 67.4 97 45.4
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 5.6e-10 67.4 83 48.2
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 5.6e-10 67.4 91 47.3
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.4e-10 67.0 45 64.4
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 7.4e-10 67.0 96 47.9
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.6e-10 66.6 76 47.4
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 1.3e-09 66.2 74 44.6
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.6e-09 65.9 81 46.9
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.6e-09 65.9 40 72.5
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.6e-09 65.9 88 46.6
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 1.6e-09 65.9 43 72.1
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.1e-09 65.5 88 45.5
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.8e-09 65.1 89 43.8
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 2.8e-09 65.1 105 41.9
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.8e-09 65.1 84 46.4
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 2.8e-09 65.1 47 61.7
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 2.8e-09 65.1 91 44.0
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.7e-09 64.7 93 40.9
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 4.8e-09 64.3 81 50.6
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 4.8e-09 64.3 85 44.7
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 4.8e-09 64.3 45 62.2
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 4.8e-09 64.3 88 47.7
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.2e-09 63.9 92 45.7
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 8.1e-09 63.5 87 42.5
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 8.1e-09 63.5 92 40.2
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.1e-08 63.2 96 45.8
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.4e-08 62.8 40 72.5
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.4e-08 62.8 89 46.1
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.8e-08 62.4 90 42.2
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 3.1e-08 61.6 94 42.6
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 3.1e-08 61.6 93 41.9
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 4.0e-08 61.2 83 42.2
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 4.0e-08 61.2 38 68.4
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 4.0e-08 61.2 87 46.0
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 5.3e-08 60.8 84 44.0
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 5.3e-08 60.8 84 44.0
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 5.3e-08 60.8 44 63.6
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.3e-08 60.8 96 42.7
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.3e-08 60.8 96 42.7
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 6.9e-08 60.5 86 43.0
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 6.9e-08 60.5 46 60.9
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 6.9e-08 60.5 87 41.4
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.9e-08 60.5 41 68.3
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.0e-08 60.1 90 41.1
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 9.0e-08 60.1 89 43.8
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 9.0e-08 60.1 74 50.0
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 9.0e-08 60.1 92 37.0
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.0e-08 60.1 42 64.3
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 1.2e-07 59.7 41 63.4
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.5e-07 59.3 57 50.9
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 1.5e-07 59.3 40 67.5
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.5e-07 59.3 40 62.5
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.5e-07 59.3 90 43.3
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.5e-07 59.3 92 41.3
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 1.5e-07 59.3 51 56.9
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.0e-07 58.9 91 44.0
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 2.0e-07 58.9 90 41.1
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.0e-07 58.9 40 70.0
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 2.0e-07 58.9 46 60.9
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 2.0e-07 58.9 46 60.9
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 2.0e-07 58.9 75 42.7
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.6e-07 58.5 96 38.5
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.6e-07 58.5 93 40.9
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.6e-07 58.5 44 56.8
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.6e-07 58.5 84 41.7
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 2.6e-07 58.5 66 45.5
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 2.6e-07 58.5 54 53.7
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 2.6e-07 58.5 47 55.3
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.6e-07 58.5 40 67.5
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 3.4e-07 58.2 91 40.7
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.4e-07 58.2 90 42.2
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.4e-07 58.2 42 59.5
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 4.5e-07 57.8 51 51.0
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 4.5e-07 57.8 51 51.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 4.5e-07 57.8 51 51.0
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 4.5e-07 57.8 51 51.0
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.5e-07 57.8 41 61.0
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.5e-07 57.8 95 38.9
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 4.5e-07 57.8 45 57.8
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 4.5e-07 57.8 80 45.0
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 4.5e-07 57.8 97 37.1
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 4.5e-07 57.8 89 41.6
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 7.6e-07 57.0 46 52.2
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 9.9e-07 56.6 90 43.3
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 9.9e-07 56.6 89 39.3
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 9.9e-07 56.6 40 60.0
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 9.9e-07 56.6 42 59.5
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 1.3e-06 56.2 85 37.6
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 1.3e-06 56.2 40 60.0
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 1.7e-06 55.8 39 64.1
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.7e-06 55.8 46 58.7
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.7e-06 55.8 44 54.5
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 2.2e-06 55.5 41 61.0
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 2.2e-06 55.5 94 36.2
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.2e-06 55.5 46 56.5
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.2e-06 55.5 50 52.0
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 2.9e-06 55.1 44 59.1
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 2.9e-06 55.1 87 36.8
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 2.9e-06 55.1 66 45.5
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 2.9e-06 55.1 81 44.4
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 3.8e-06 54.7 79 41.8
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 3.8e-06 54.7 79 41.8
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 3.8e-06 54.7 36 66.7
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 3.8e-06 54.7 90 41.1
ECA240G4721 Erigeron canadensis HOM05D006380 ORTHO05D008400 3.8e-06 54.7 63 42.9
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 3.8e-06 54.7 94 39.4
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 4.9e-06 54.3 39 56.4
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 4.9e-06 54.3 37 70.3
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 4.9e-06 54.3 46 56.5
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 4.9e-06 54.3 59 49.2
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 4.9e-06 54.3 90 41.1
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 4.9e-06 54.3 40 57.5
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.9e-06 54.3 40 57.5
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 6.4e-06 53.9 36 66.7
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 6.4e-06 53.9 85 40.0
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 6.4e-06 53.9 37 64.9
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 6.4e-06 53.9 70 42.9
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 6.4e-06 53.9 61 42.6
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 8.4e-06 53.5 84 40.5
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 8.4e-06 53.5 40 57.5
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 8.4e-06 53.5 50 56.0


User provided reference genes

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