Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 0.0e+00 1236.9 825 100.0
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 0.0e+00 1213.7 825 91.8
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 0.0e+00 1204.1 827 91.3
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 0.0e+00 1189.1 827 91.1
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 0.0e+00 1095.5 827 85.1
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 3.8e-274 948.3 833 83.2
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 9.0e-268 927.2 833 75.0
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 3.6e-200 702.6 856 60.6
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 4.1e-196 689.1 854 66.4
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 9.5e-193 677.9 785 61.4
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 8.1e-192 674.9 847 59.5
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 3.2e-188 662.9 866 57.4
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 1.6e-187 660.6 859 58.9
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 5.1e-186 655.6 861 58.7
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 1.5e-185 654.1 860 58.8
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 1.2e-184 651.0 822 59.2
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 3.1e-183 646.4 861 57.7
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 9.9e-182 641.3 865 57.3
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 4.9e-181 639.0 876 58.3
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 1.7e-178 630.6 854 58.8
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 3.0e-178 629.8 858 63.4
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 1.5e-177 627.5 854 59.3
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 7.3e-177 625.2 852 58.3
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 3.1e-175 619.8 854 56.6
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 8.9e-175 618.2 823 57.2
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 2.9e-173 613.2 861 56.1
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 1.1e-172 611.3 856 57.0
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 1.9e-172 610.5 669 66.1
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 1.0e-170 604.7 860 55.9
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 2.5e-169 600.1 669 64.3
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 2.4e-167 593.6 669 62.2
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 4.0e-167 592.8 868 48.2
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 5.3e-167 592.4 859 53.8
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 1.5e-166 590.9 857 60.6
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 7.6e-166 588.6 864 53.6
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 7.6e-166 588.6 864 53.6
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 9.9e-166 588.2 865 53.8
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 1.3e-165 587.8 669 63.8
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 2.2e-165 587.0 859 53.3
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 2.9e-165 586.6 850 56.1
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 1.9e-164 583.9 810 57.2
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 5.4e-164 582.4 866 53.7
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 5.4e-164 582.4 868 53.2
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 1.2e-163 581.3 842 52.7
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 1.2e-163 581.3 842 52.7
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 1.6e-163 580.9 674 61.3
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 1.6e-163 580.9 674 63.4
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 6.0e-163 578.9 778 56.3
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 3.0e-162 576.6 706 61.3
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 8.7e-162 575.1 794 55.0
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 8.7e-162 575.1 796 55.4
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 1.1e-161 574.7 671 62.9
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 7.4e-161 572.0 672 62.4
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 1.3e-160 571.2 709 52.3
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 1.3e-160 571.2 709 52.3
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 2.4e-159 567.0 789 56.4
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 3.1e-159 566.6 800 55.6
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 4.0e-159 566.2 858 54.5
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 6.9e-159 565.5 689 61.7
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 1.5e-158 564.3 860 54.0
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 1.5e-158 564.3 808 52.1
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 2.0e-158 563.9 829 48.3
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 4.5e-158 562.8 858 54.3
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 4.2e-156 556.2 846 53.1
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 4.2e-156 556.2 864 59.3
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 1.6e-155 554.3 868 58.5
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 3.5e-155 553.1 852 53.5
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 3.0e-154 550.1 904 44.4
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 3.3e-153 546.6 859 53.3
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 4.3e-153 546.2 869 45.3
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 2.1e-152 543.9 805 54.3
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 3.7e-152 543.1 852 46.9
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 5.3e-151 539.3 844 52.6
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.4e-148 531.2 818 47.9
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 1.9e-148 530.8 822 53.6
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 1.6e-147 527.7 669 59.9
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 6.0e-147 525.8 848 52.4
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 1.3e-146 524.6 759 55.6
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 2.3e-146 523.9 855 49.5
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 3.0e-146 523.5 824 47.2
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 2.2e-141 507.3 675 60.9
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 1.5e-134 484.6 875 43.7
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 1.5e-134 484.6 824 51.8
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 7.2e-132 475.7 747 43.6
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 9.1e-127 458.8 597 63.7
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 5.5e-116 422.9 735 49.8
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 3.7e-112 410.2 806 40.2
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 2.0e-105 387.9 522 63.2
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 4.8e-104 383.3 810 44.7
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 8.9e-90 335.9 633 36.3
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 2.3e-85 321.2 556 47.7
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 4.0e-82 310.5 343 65.6
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 6.0e-78 296.6 281 73.7
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 2.0e-73 281.6 833 40.8
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 2.6e-73 281.2 538 53.9
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.6e-67 260.8 824 41.1
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 8.6e-61 239.6 822 41.0
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 1.4e-50 205.7 231 51.9
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 3.2e-47 194.5 236 48.3
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 3.3e-44 184.5 292 41.4
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 2.1e-38 165.2 371 39.4
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 3.5e-38 164.5 322 50.3
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 1.4e-31 142.5 74 91.9
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.1e-26 124.8 211 39.3
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 3.0e-21 108.2 106 50.0
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 1.0e-13 83.2 157 33.8
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 7.4e-12 77.0 74 50.0
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 3.7e-11 74.7 161 59.6
vmacro02472 Vaccinium macrocarpon HOM05D000001 ORTHO05D009986 6.5e-08 63.9 178 28.1
VMungo1383G1120 Vigna mungo HOM05D000001 ORTHO05D009986 3.6e-06 58.2 152 28.3


User provided reference genes

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