Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1188 Fragaria x ananassa HOM05D003003 ORTHO05D008343 1.6e-55 219.2 108 100.0
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 8.1e-52 206.8 105 96.2
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 3.1e-51 204.9 105 95.2
FAN05G1701 Fragaria x ananassa HOM05D003003 ORTHO05D008343 5.3e-51 204.1 105 94.3
FAN02G2939 Fragaria x ananassa HOM05D003003 ORTHO05D008343 1.5e-50 202.6 105 95.2
RcHm_v2.0_Chr3g0460061 Rosa chinensis HOM05D003003 ORTHO05D008343 7.9e-47 190.3 107 90.7
Prupe.6G296900 Prunus persica HOM05D003003 ORTHO05D008343 1.1e-27 126.7 103 65.0
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 1.4e-27 126.3 95 67.4
Hma1.2p1_0174F.1_g076680 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 5.9e-26 120.9 95 68.4
Hma1.2p1_0174F.1_g076690 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 5.9e-26 120.9 95 68.4
Gohir.D02G106600 Gossypium hirsutum HOM05D003003 ORTHO05D008343 3.8e-25 118.2 96 66.7
Gohir.A02G089500 Gossypium hirsutum HOM05D003003 ORTHO05D008343 5.0e-25 117.9 96 65.6
Thecc.04G148400 Theobroma cacao HOM05D003003 ORTHO05D008343 1.1e-24 116.7 95 65.3
CiPaw.09G223200 Carya illinoinensis HOM05D003003 ORTHO05D008343 3.6e-23 111.7 81 66.7
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 1.0e-22 110.2 82 68.3
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 1.4e-22 109.8 96 60.4
TAR633G0041 Trochodendron aralioides HOM05D003003 ORTHO05D008343 1.8e-22 109.4 107 55.1
Gorai.005G121100 Gossypium raimondii HOM05D003003 ORTHO05D008343 3.0e-22 108.6 95 63.2
MD04G1177200 Malus domestica HOM05D003003 ORTHO05D008343 3.0e-22 108.6 109 56.0
QL07p031297 Quercus lobata HOM05D003003 ORTHO05D008343 3.9e-22 108.2 98 58.2
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 2.0e-21 105.9 99 58.6
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 2.6e-21 105.5 95 58.9
Nn2g10236 Nelumbo nucifera HOM05D003003 ORTHO05D008343 3.3e-21 105.1 102 53.9
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 5.7e-21 104.4 95 53.7
Actinidia11485 Actinidia chinensis HOM05D000166 ORTHO05D001348 5.7e-21 104.4 83 59.0
Glyma.09G272400 Glycine max HOM05D003003 ORTHO05D008343 7.4e-21 104.0 85 58.8
PGR004G0262 Punica granatum HOM05D003003 ORTHO05D008343 9.7e-21 103.6 97 56.7
arahy.Tifrunner.gnm1.ann1.NKAS4C Arachis hypogaea HOM05D003003 ORTHO05D008343 1.3e-20 103.2 80 63.8
arahy.Tifrunner.gnm1.ann1.V4D1ZF Arachis hypogaea HOM05D003003 ORTHO05D008343 1.3e-20 103.2 80 63.8
arahy.Tifrunner.gnm1.ann1.7LY3NN Arachis hypogaea HOM05D003003 ORTHO05D008343 1.7e-20 102.8 80 63.8
Cfa017002 Carpinus fangiana HOM05D003003 ORTHO05D008343 1.7e-20 102.8 93 55.9
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 2.2e-20 102.4 93 55.9
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 8.2e-20 100.5 105 56.2
TPR.G24287 Trifolium pratense HOM05D003003 ORTHO05D008343 1.8e-19 99.4 85 57.6
Sed0024487 Sechium edule HOM05D003003 ORTHO05D008343 2.4e-19 99.0 84 60.7
VMungo1383G2339 Vigna mungo HOM05D003003 ORTHO05D008343 2.4e-19 99.0 85 56.5
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 3.1e-19 98.6 96 57.3
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 4.1e-19 98.2 108 50.0
TWI74G0515 Tripterygium wilfordii HOM05D003003 ORTHO05D008343 4.1e-19 98.2 106 52.8
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 5.3e-19 97.8 92 57.6
EL10Ac7g17135 Beta vulgaris HOM05D003003 ORTHO05D008343 6.9e-19 97.4 97 53.6
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 6.9e-19 97.4 65 69.2
Medtr7g073990 Medicago truncatula HOM05D003003 ORTHO05D008343 9.1e-19 97.1 85 56.5
Phvul.008G079900 Phaseolus vulgaris HOM05D003003 ORTHO05D008343 1.2e-18 96.7 85 54.1
MSTRG.18930 Avicennia marina HOM05D003003 ORTHO05D008343 1.5e-18 96.3 105 51.4
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 2.0e-18 95.9 86 57.0
Sed0015775 Sechium edule HOM05D003003 ORTHO05D008343 2.6e-18 95.5 81 60.5
Ca_07787_v3 Cicer arietinum L. HOM05D003003 ORTHO05D008343 3.4e-18 95.1 80 57.5
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 4.5e-18 94.7 97 53.6
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 7.7e-18 94.0 96 52.1
Psat3g117440 Pisum sativum HOM05D003003 ORTHO05D008343 7.7e-18 94.0 108 47.2
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 7.7e-18 94.0 92 55.4
CSS0014362 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 3.8e-17 91.7 65 67.7
Lj1g0019401 Lotus japonicus HOM05D003003 ORTHO05D008343 3.8e-17 91.7 86 55.8
Lj1g0016212 Lotus japonicus HOM05D003003 ORTHO05D008343 5.0e-17 91.3 86 57.0
RcHm_v2.0_Chr1g0328921 Rosa chinensis HOM05D003003 ORTHO05D008343 5.0e-17 91.3 57 80.7
unitig_27.g24893 Utricularia gibba HOM05D003003 ORTHO05D008343 5.0e-17 91.3 73 65.8
Cc06_g00240 Coffea canephora HOM05D003003 ORTHO05D008343 8.5e-17 90.5 85 55.3
CSS0024099 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 2.5e-16 89.0 60 70.0
Glyma.18G216900 Glycine max HOM05D003003 ORTHO05D008343 3.2e-16 88.6 72 59.7
THA.LOC104806235 Tarenaya hassleriana HOM05D003003 ORTHO05D008343 7.2e-16 87.4 83 54.2
Aqoxy4G03302 Aquilegia oxysepala HOM05D003003 ORTHO05D008343 2.1e-15 85.9 91 45.1
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 2.1e-15 85.9 65 66.2
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 2.7e-15 85.5 100 53.0
Cpa.g.sc72.27 Carica papaya HOM05D003003 ORTHO05D008343 2.7e-15 85.5 75 57.3
Sc22g0001890 Simmondsia chinensis HOM05D003003 ORTHO05D008343 3.6e-15 85.1 65 60.0
GSVIVG01029873001 Vitis vinifera HOM05D003003 ORTHO05D008343 3.6e-15 85.1 60 68.3
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 4.7e-15 84.7 67 59.7
FAN14G0728 Fragaria x ananassa HOM05D003003 ORTHO05D008343 8.0e-15 84.0 44 95.5
Os05g0481000 Oryza sativa ssp. japonica HOM05D003003 ORTHO05D008343 1.4e-14 83.2 95 52.6
Thhalv10008400m.g Eutrema salsugineum HOM05D003003 ORTHO05D008343 3.0e-14 82.0 99 55.6
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 3.0e-14 82.0 65 64.6
BcaB03g13769 Brassica carinata HOM05D003003 ORTHO05D008343 3.9e-14 81.6 103 52.4
CARHR031420 Cardamine hirsuta HOM05D003003 ORTHO05D008343 5.2e-14 81.3 110 43.6
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 6.7e-14 80.9 97 53.6
SGA_v2.0_scaffold2144G54083 Striga asiatica HOM05D003003 ORTHO05D008343 1.1e-13 80.1 73 56.2
SGA_v2.0_scaffold373G50193 Striga asiatica HOM05D003003 ORTHO05D008343 1.1e-13 80.1 73 56.2
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 2.6e-13 79.0 85 56.5
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 2.6e-13 79.0 85 56.5
Hund19741 Selenicereus undatus HOM05D003003 ORTHO05D008343 2.6e-13 79.0 65 61.5
RcHm_v2.0_Chr5g0055391 Rosa chinensis HOM05D003003 ORTHO05D008343 3.3e-13 78.6 50 82.0
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 5.7e-13 77.8 81 55.6
AL1G46140 Arabidopsis lyrata HOM05D003003 ORTHO05D008343 7.4e-13 77.4 81 55.6
CDE06G1541 Ceratophyllum demersum HOM05D003003 ORTHO05D008343 2.8e-12 75.5 85 47.1
PSO017G2464 Papaver somniferum HOM05D003003 ORTHO05D008343 2.8e-12 75.5 68 52.9
PSO170G6425 Papaver somniferum HOM05D003003 ORTHO05D008343 3.7e-12 75.1 68 52.9
AT1G32070 Arabidopsis thaliana HOM05D003003 ORTHO05D008343 4.8e-12 74.7 82 54.9
Lalb_Chr03g0043871 Lupinus albus HOM05D003003 ORTHO05D008343 3.1e-11 72.0 64 56.2
Zm00001eb290780 Zea mays HOM05D003003 ORTHO05D008343 9.1e-11 70.5 65 52.3
HPP92_019756 Vanilla planifolia HOM05D003003 ORTHO05D008343 1.2e-10 70.1 76 48.7
Eucgr.K01296 Eucalyptus grandis HOM05D003003 ORTHO05D008343 2.6e-10 68.9 68 51.5
SEGI_32854 Sequoiadendron giganteum HOM05D003003 ORTHO05D008343 5.0e-09 64.7 59 55.9
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 6.5e-09 64.3 83 49.4
Lj2A56T95 Lonicera japonica HOM05D003003 ORTHO05D008343 1.1e-08 63.5 43 69.8
AUR62006445 Chenopodium quinoa HOM05D003003 ORTHO05D008343 2.5e-08 62.4 49 63.3
Rhsim05G0233000 Rhododendron simsii HOM05D003003 ORTHO05D008343 2.5e-08 62.4 43 67.4
Rhsim04G0150500 Rhododendron simsii HOM05D003003 ORTHO05D008343 5.5e-08 61.2 44 63.6
vmacro20392 Vaccinium macrocarpon HOM05D003003 ORTHO05D008343 7.2e-08 60.8 43 72.1
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 9.4e-08 60.5 54 59.3
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 6.1e-07 57.8 44 61.4
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 6.1e-07 57.8 46 69.6
Sp1g27730 Schrenkiella parvula HOM05D003003 ORTHO05D008343 6.1e-07 57.8 99 40.4
Mapoly0166s0017 Marchantia polymorpha HOM05D003003 ORTHO05D008343 1.0e-06 57.0 62 45.2
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 2.3e-06 55.8 87 42.5
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 2.3e-06 55.8 87 42.5


User provided reference genes

Program Settings